|
|
Properties
| Property Name | Value |
|---|
| Product | mate efflux family protein |
| Orig transcript id | gnl|cribi|Naga_100188g10.2456.mrna |
| Orig protein id | gnl|cribi|Naga_100188g10.2456 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:508839..510578 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8929 ID=rna8929|Name=rna8929|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp
ATGACACGACATGGGCAGAGCTGCAATTTCGGCCGACCAGGAGCACAAGA
CGACACGAGGTTGTCAGAGTCCCCTCGAACGTTGCTTTGCTTGAAGCCGG
CGTACACAAGCCTCACTACGCACCACATCAACATGCCTCCTTCGATTTTT
GAGCGTCTCATCAACATTTTGGGAAGCAGTCCACCAGACTCAGATCATCA
CCGACCCTACGATCAAGAAAGCTACAAAGTTCGGCGCGCATTGAGTGATT
GCACGATTCCTGACGATTTGAGAGAGGAAGGAGCGGAACCTCCGGCTGTC
AAGGCAGGACGACTTGAATTTTCACGTGCATCGGATGTCCTCGATAATAC
TTCCAAGGACTCTCGGAATCCCCTTCCGAAGGGCGGTGATGGAGGACAGA
AAAGTGGACGTCGGCAGCATATTTCTTCCTATGCTTCAAAGATGGCCCCT
TTGGAGGACGAGGGCGCGAGGGAGAAGGACATGAAGAGGGAAGCGTCTTC
CTCATCATGTTCGTCCACAGGGCCCTGCTCTAGTACCCCCAAAGAGTTTT
TTTTCAGCGACCAGGATGGGAAGATCCTGCGAGGTGATTCACGGGCCTCC
TCCTTGGATGTGGCCATACCCCCCCTCAATGGCCATGATCATCCCCATCA
CGTTCGCGTAATTTCCTGGATGAAGGATCTGGGGGAGGGCGCATTATCAT
TGGAGGAGTTTAGCATGATCCTTCCGACCGTTTTGAAGCGGTGCAACCTT
CGGAACATGAAGATGTGCGAACCGGTCAAGCGCCTACTAGGGCGTTTGGA
GCTCCGTCGTGAGGATTGGTCGCCCTACGCGTTTTGGGACCCTGACAAGC
TCTACACCCGCAACCTGGTGGCGACGGACGGCAAGACTTTCACCCTGCTC
CTCCTCTGCTGGAATCCCGGCAAGGAATCTCCCATCCACGACCATCCTTG
TGACGGTTGCTGGGTCAAATGCGCGCAGGGCACGGTCAAGGAGACCATCT
ACCAGATGGACGGAGGCAGGAGCCTGGTGGCGGAGGAGGAGAAGTACTTC
TACCCGGGGGAGCTCTCGTACATCGAAGATTCGCTCGGCTTCCACAAGGT
GGGCAACCCAGACCCCGTCATCGGAGCTGTCACCCTCCATTGCTACATTC
CTCCCCCCCGCTCTGCCCGCGTCTGGCTGCCCACCCGCACGGCGGTCTCT
GACTCTATGACCGTGCCCACGTGCCTGTATTCGGCCTTTGGACAGCGCGT
GAAGGAAGGGGGGAGGGAGATGGGGAAGGAGGGACCGACAATCACGGACC
TCAGGGCTGTGGAAGAACAACGAAAAGATAAGAGCAGGAGGGAGGGAGGA
TGCATCGCTTTATGCCATCGCCCACCCCCTCCACGTAGGAAGGAATACGT
AGGACACGCAATAAAATATGTTGAAGATATAGAAATAATTGGGAAAGTGG
GGAAGGAAATATTGACAAGCACATCAACCCATTCTGAATGTCTAAAAATC
CGGCGATGGTTAGACCAGGCAGGTGCTTAG back to topprotein sequence of rna8929 >rna8929-protein ID=rna8929-protein|Name=rna8929|organism=Nannochloropsis gaditana|type=polypeptide|length=579bp
MLLPRKHCHGISLLAFFLSFSTAFVFVRPATTSFCNPTHQSKPSSTVKAN
KTLPPLPQSSSSPRGPVRKNSPDPPFKWRGGAFAARIPGTKPNRVLAWLQ
TFAPGPDAPRKQKLDWDFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVA
LGGVGVAISAQYSVSKLYNDPLLRTSISLVASSEGADVGESEASKANALS
RSVSTALLLAGVVGLLQGVVYVLCAAPIIRAMGVLPGSAMYDPAVSYLRI
RALGTPAATLWLVSNGIFRGLGDTLTPLKWSLVFTVLNAALDPLCMFTFG
MGPSGAAMGTAIAQYVALFPLLLRVRQRARVRLNFADLLPSLGQYLRAAS
LVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAI
AVQSLIARELGVLKAATLASASGTASIREVEEARGNLWHLIKRGCVLGAM
VSGGLSVVTLCSKSTVMRGLTSDLSVQATALAVFPLVMACQVNKGLAYPV
NGIIMGGLDWGFSTVTMWLANVICIGLLLLWSPHVGLSELWTALSVFMAI
QWVSGVIRFASGTGVWKLLRERGGRQRAR back to topmRNA from alignment at KK037250.1:508839..510578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8929 ID=rna8929|Name=rna8929|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at KK037250.1:508839..510578+ (Nannochloropsis gaditana)
ATGCTACTCCCGCGCAAACACTGCCATGGCATCTCCTTGCTAGCTTTTTT
TttgtccttctccacagCCTTCGTCTTTGTTCGGCCAGCCACCACCTCAT
TTTGCAATCCCACCCATCAAAGTAAACCATCAAGCACAGTCAAAGCCAAC
AAGACCCTGCCTCCACTGCCACAATCCTCTTCATCACCTCGTGGCCCCGT
GCGAAAAAATTCTCCAGATCCACCTTTTAAATGGCGTGGTGGTGCCTTCG
CTGCACGCATCCCCGGAACAAAGCCCAATCGGGTCCTGGCTTGGCTGCAA
ACATTTGCGCCTGGACCTGACGCCCCCCGGAAACAAAAGCTTGACTGGGA
CTTTCTCCGGATCGCCGCACCGGCATTCGTGCAATTCACAGCCGAACCAC
TAGCAGGATTGGTCGACACGGCATACTTGGGGCGGCTGGGACCGGTAGCT
CTTGGGGGTGTGGGAGTGGCCATCTCGGCGCAATATTCGGTGTCCAAGCT
CTACAATGACCCTTTACTGCGCACGAGCATCTCCCTGGTCGCCTCAAGCG
AGGGAGCAGACGTTGGAGAAAGTGAAGCGAGCAAAGCAAATGCCCTCTCT
CGGTCAGTCagcaccgccctcctcctagCGGGAGTTGTGGGTCTACTTCA
AGGGGTAGTGTACGTGTTGTGCGCCGCTCCAATCATTCGCGCCATGGGCG
TACTCCCCGGAAGCGCAATGTACGACCCCGCTGTCTCATATTTGCGCATT
CGAGCCCTGGGCACCCCTGCTGCCACGCTCTGGCTCGTTTCCAACGGTAT
CTTCCGCGGTCTCGGCGATACTCTGACCCCGTTGAAGTGGAGCCTTGTGT
TCACCGTCCTGAACGCGGCCTTGGACCCGCTGTGCATGTTCACGTTCGGG
ATGGGTCCTTCTGGGGCAGCCATGGGCACCGCAATCGCACAATACGTGGC
GTTgttccccttgctccttcgaGTCCGGCAACGTGCCCGTGTCCGCCTCA
ATTTcgccgacctcctcccctccctcggccaaTACCTCCGTGCGGCCTCC
TTGGTCTTCGTCAGGACCTGGGGAAAGATCCTTGCCTACGCCTACTGCGC
TCGCCAAGCCGCTCTGCTCGGTGTCGTGGGAGCGGCTGCCTACAACCTGA
CGTTTCAGGTGGGATTTGCCACCACCCAGCTCTGCGAGTCCATCGCCATC
GCCGTGCAGTCCCTCATCGCCCGAGAGCTTGGAGTCCTGAAGGCAGCCAC
GCTGGCCTCCGCAAGTGGTACGGCCAGCAtaagggaagtggaggaagcaC
GCGGGAACCTCTGGCACCTGATCAAGCGAGGCTGTGTCCTCGGTGCCATG
GTCTCCGGCGGCCTTTCCGTCGTCACGCTATGCAGCAAGTCGACGGTCAT
GCGAGGTCTCACATCCGATCTCTCCGTGCAAGCCACGGCATTGGCTGTCT
TTCCGCTTGTCATGGCCTGCCAGGTCAATAAGGGCCTCGCCTACCCCGTG
AACGGGATCATCATGGGTGGCCTCGATTGGGGCTTTTCGACCGTGACCAT
GTGGCTGGCGAACGTGATCTGTATCGGACTCTTGCTCTTGTGGAGTCCTC
ACGTGGGTTTGTCAGAGTTGTGGACTGCTTTAAGTGTCTTTATGGCTATC
CAGTGGGTCAGTGGCGTGATTCGCTTCGCGTCAGGCACGGGGGTATGGAA
ACTTTTGAGGGAACGAGGTGGGCGACAGCGTGCAAGGTGA back to topCoding sequence (CDS) from alignment at KK037250.1:508839..510578+ >rna8929 ID=rna8929|Name=rna8929|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at KK037250.1:508839..510578+ (Nannochloropsis gaditana)
ATGCTACTCCCGCGCAAACACTGCCATGGCATCTCCTTGCTAGCTTTTTT
TttgtccttctccacagCCTTCGTCTTTGTTCGGCCAGCCACCACCTCAT
TTTGCAATCCCACCCATCAAAGTAAACCATCAAGCACAGTCAAAGCCAAC
AAGACCCTGCCTCCACTGCCACAATCCTCTTCATCACCTCGTGGCCCCGT
GCGAAAAAATTCTCCAGATCCACCTTTTAAATGGCGTGGTGGTGCCTTCG
CTGCACGCATCCCCGGAACAAAGCCCAATCGGGTCCTGGCTTGGCTGCAA
ACATTTGCGCCTGGACCTGACGCCCCCCGGAAACAAAAGCTTGACTGGGA
CTTTCTCCGGATCGCCGCACCGGCATTCGTGCAATTCACAGCCGAACCAC
TAGCAGGATTGGTCGACACGGCATACTTGGGGCGGCTGGGACCGGTAGCT
CTTGGGGGTGTGGGAGTGGCCATCTCGGCGCAATATTCGGTGTCCAAGCT
CTACAATGACCCTTTACTGCGCACGAGCATCTCCCTGGTCGCCTCAAGCG
AGGGAGCAGACGTTGGAGAAAGTGAAGCGAGCAAAGCAAATGCCCTCTCT
CGGTCAGTCagcaccgccctcctcctagCGGGAGTTGTGGGTCTACTTCA
AGGGGTAGTGTACGTGTTGTGCGCCGCTCCAATCATTCGCGCCATGGGCG
TACTCCCCGGAAGCGCAATGTACGACCCCGCTGTCTCATATTTGCGCATT
CGAGCCCTGGGCACCCCTGCTGCCACGCTCTGGCTCGTTTCCAACGGTAT
CTTCCGCGGTCTCGGCGATACTCTGACCCCGTTGAAGTGGAGCCTTGTGT
TCACCGTCCTGAACGCGGCCTTGGACCCGCTGTGCATGTTCACGTTCGGG
ATGGGTCCTTCTGGGGCAGCCATGGGCACCGCAATCGCACAATACGTGGC
GTTgttccccttgctccttcgaGTCCGGCAACGTGCCCGTGTCCGCCTCA
ATTTcgccgacctcctcccctccctcggccaaTACCTCCGTGCGGCCTCC
TTGGTCTTCGTCAGGACCTGGGGAAAGATCCTTGCCTACGCCTACTGCGC
TCGCCAAGCCGCTCTGCTCGGTGTCGTGGGAGCGGCTGCCTACAACCTGA
CGTTTCAGGTGGGATTTGCCACCACCCAGCTCTGCGAGTCCATCGCCATC
GCCGTGCAGTCCCTCATCGCCCGAGAGCTTGGAGTCCTGAAGGCAGCCAC
GCTGGCCTCCGCAAGTGGTACGGCCAGCAtaagggaagtggaggaagcaC
GCGGGAACCTCTGGCACCTGATCAAGCGAGGCTGTGTCCTCGGTGCCATG
GTCTCCGGCGGCCTTTCCGTCGTCACGCTATGCAGCAAGTCGACGGTCAT
GCGAGGTCTCACATCCGATCTCTCCGTGCAAGCCACGGCATTGGCTGTCT
TTCCGCTTGTCATGGCCTGCCAGGTCAATAAGGGCCTCGCCTACCCCGTG
AACGGGATCATCATGGGTGGCCTCGATTGGGGCTTTTCGACCGTGACCAT
GTGGCTGGCGAACGTGATCTGTATCGGACTCTTGCTCTTGTGGAGTCCTC
ACGTGGGTTTGTCAGAGTTGTGGACTGCTTTAAGTGTCTTTATGGCTATC
CAGTGGGTCAGTGGCGTGATTCGCTTCGCGTCAGGCACGGGGGTATGGAA
ACTTTTGAGGGAACGAGGTGGGCGACAGCGTGCAAGGTGA back to top
|