rna8924, rna8924 (mRNA) Nannochloropsis gaditana

Overview
Namerna8924
Unique Namerna8924
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationKK037250.1:496002..497466 +

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Properties
Property NameValue
ProductDIX domain containing protein
Orig transcript idgnl|cribi|Naga_100188g5.2462.mrna
Orig protein idgnl|cribi|Naga_100188g5.2462
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:496002..497466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100188g5gene8653Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8924rna8924-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21779.1cds8894Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8924 ID=rna8924|Name=rna8924|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGCCCTTTACGCTCTCCCTTATTTTAGGCTTGAGTTTCCTGGTCCAAAG
CACTAGCATCTCCGCATTCCACCACTTGCATTCGTCTATTCAACTACTTG
AGGGGTCACGAGCGCAGCGTCGTGGTCGCCGGAGTACGACGCTTTCACTC
GACAAACCATTGCTCGCTGAAGGCATCAATATACGCAGCCTCCCTGCAGG
CGTACCCCCGGCACTCCAACAAGGCCAGATCCTGGTAGCAAAACCATGGG
AGTACAACCACTTCACAAGCAAAAGCTGCTTATTCCTGTACAAGCATGAT
TCTGAGACTGGCTCCCGCGGGGTTGTCTTGGAGAAGCCGACCGCCTTTAC
CTTGTCCGAGCTCGCGCCGCCCTTTGCGGCATCCGTCTTCGCGAATCACA
CCGTCTTTTTGGGCGGGGAGCAAGGAGGAGACATGGCCGTGCTGTTGCAT
CCGTACAAGCACGTGCCAGGAGTGCGATCCGTGGGTGGCGGGCTTTACTA
TGGGGGTTTGAGTGGAGCGGAGGCCATGTTCAAAGAGCAGGAGGAAAACA
AGGCAGAGCATGGACTGGATCGATCACAATTCAAATGGTGGTTCAATTAC
ATGTCATGGGGTCCGGGACAGCTGGAGGACCAGGAAGGACAGGGGGGGCG
AGCGTCCGTTGCAGGAGGCACACCGCCCCCTTCACCTACTAGGGTCAGCC
ACGGGACCCCACGACCACATGCAAATCAAACGAAGCCCCTTGTGTGTCGC
AATTGGCGGGTAAATGCATTTGTTGGCACTCAAAGAAAAATAGAATACAT
GCGTGGGCCTTAG
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protein sequence of rna8924

>rna8924-protein ID=rna8924-protein|Name=rna8924|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKT
RLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGST
GMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRGNKGLVSPA
SDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGH
PPHSTPGPQEMSGGSKVVAGTAAGGKGDLLDFDAFGSQPPAPSVPPMRGV
PPMRGVSPPQQPQQRQTGYPSSSNATGGWM
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mRNA from alignment at KK037250.1:496002..497466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8924 ID=rna8924|Name=rna8924|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp|location=Sequence derived from alignment at KK037250.1:496002..497466+ (Nannochloropsis gaditana)
AGGCCCCGAGTATTTCACGGTCTCATGTGTCGTATCAGGCCGATATACAA
CTGTGCACGCTGTACGTGCCCTGTAgcgcggaggtggagagtGTTCGAAC
ACGTCAAAAAGGATACGAGGAACCGAATTCGGAGCATTGCGATGAAGCCC
GTGCCGTAAATTATTAGTTAGTTCCAAATGGTATTCACCCTTTGACACGA
CCGCGCGAGCCACCCCGAGTATCGTATGCAGTGGTACTCCAACGTGTGAA
GCATGTATCCCGTGTCAAAGGATTGTTGGGGACCCTTGGCGTTTCTCGGT
TCAGTGATCTCCCGACACTGATCCTAAGTGCtcgccttcttgtcctttcT
ATTTCCTACAGAGTCTTGCGCCTCCAGCATTCGCCCGCCAAGCCTGGTTC
ACATCCTAGGTCCCAGTATCATGATACGGTATTACATTCCTGGCGACGGG
GACGACGCGTCGCACCCAAACATCTTTCATCTCCCACCATCGGTCCAACA
ACCCCCCCGGTTGCGGGACGTTCGACAGCACTTCCCGCTCCCAGGCGGCT
ACCACTTCCGCTTTAAGACACGATTGGATGGAACCCCCGACAAGAAAGCG
GTCTGGATGGACGTCacggaggacgcggccgAGCTTCCTACTTTTGACGG
ATTTTACATAGCCAAGGTGTCACGGATGCGCATGGAAATGCCGAGCAAGC
CCACGGCGGCGGGGAGTACGGGtatgtcttcttcttcctcctcctccccc
acgtctgCGGGTTATTCCAGGACAAGCCAAGCCACAGGCCCAGTCTCAGC
GACCAGAGcgactccctccgcctcccaaTCCCTGCCCCTTCGAGGCAACA
AGGGACTTGTGTCGCCGGCCTCCGACAATGATCCGTTCGGGCTCTTTCAC
gaagcccctccctcgtcctccacctcctcctccttctcaaagGCCCCAGC
GAGCGTGTCTGGGAACAGCAGTGCGCCCCACGCGACGACGAGCAGCAGCC
ACCCCGCGGCTCGCGGCCATCCACCGCACTCTACTCCAGGGCCACAGGAA
ATGTCTGGAGGAAGCAAGGTAGTTGCAGGGACGGCCgctggtgggaaagg
agattTACTAGATTTTGATGCCTTTGGCAGCCAACCGCCGGCTCCTTCAG
TGCCACCCATGAGGGGAGTGCCTCCCATGCGTGGAGTGAGTCCAccgcag
cagccacagcagcGGCAGACGGGCtacccttcctcgtccaatgCGACCGG
GGGATGGATGTAAAGAGAGAGGTACGACTCCTAACAGGGAGTAAAGAGGA
GCCCAATAGAGGGCCGCTCCCGACGTCTGAACCAAAGCAAAATAGGGACC
ACGAAGAACACACTTCTTTGATCGGGTTCGCAGTCATTCAACATGTTATT
TAAACACGCGCCTTTGTACACTGTGGCTTTGTCGTTCGTCCTCCACATTT
CTCACCCTTTactgt
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Coding sequence (CDS) from alignment at KK037250.1:496002..497466+

>rna8924 ID=rna8924|Name=rna8924|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at KK037250.1:496002..497466+ (Nannochloropsis gaditana)
ATGATACGGTATTACATTCCTGGCGACGGGGACGACGCGTCGCACCCAAA
CATCTTTCATCTCCCACCATCGGTCCAACAACCCCCCCGGTTGCGGGACG
TTCGACAGCACTTCCCGCTCCCAGGCGGCTACCACTTCCGCTTTAAGACA
CGATTGGATGGAACCCCCGACAAGAAAGCGGTCTGGATGGACGTCacgga
ggacgcggccgAGCTTCCTACTTTTGACGGATTTTACATAGCCAAGGTGT
CACGGATGCGCATGGAAATGCCGAGCAAGCCCACGGCGGCGGGGAGTACG
GGtatgtcttcttcttcctcctcctcccccacgtctgCGGGTTATTCCAG
GACAAGCCAAGCCACAGGCCCAGTCTCAGCGACCAGAGcgactccctccg
cctcccaaTCCCTGCCCCTTCGAGGCAACAAGGGACTTGTGTCGCCGGCC
TCCGACAATGATCCGTTCGGGCTCTTTCACgaagcccctccctcgtcctc
cacctcctcctccttctcaaagGCCCCAGCGAGCGTGTCTGGGAACAGCA
GTGCGCCCCACGCGACGACGAGCAGCAGCCACCCCGCGGCTCGCGGCCAT
CCACCGCACTCTACTCCAGGGCCACAGGAAATGTCTGGAGGAAGCAAGGT
AGTTGCAGGGACGGCCgctggtgggaaaggagattTACTAGATTTTGATG
CCTTTGGCAGCCAACCGCCGGCTCCTTCAGTGCCACCCATGAGGGGAGTG
CCTCCCATGCGTGGAGTGAGTCCAccgcagcagccacagcagcGGCAGAC
GGGCtacccttcctcgtccaatgCGACCGGGGGATGGATGTAA
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Synonyms
Publications