EWM21779.1, cds8894 (CDS) Nannochloropsis gaditana

Overview
NameEWM21779.1
Unique Namecds8894
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:496422..497264 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21779.1
ProductDIX domain containing protein
Orig transcript idgnl|cribi|Naga_100188g5.2462.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:496422..497264 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR001158DIX
Homology
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|585102114|gb|EWM21779.1| (DIX domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGSTGMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRGNKGLVSPASDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGHPPHSTPGPQEMSGGSKVVAGTAAGGKGDLLDFDAFGSQPPAPSVPPMRGVPPMRGVSPPQQPQQRQTGYPSSSNATGGWM 280
            MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGSTGMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRGNKGLVSPASDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGHPPHSTPGPQEMSGGSKVVAGTAAGGKGDLLDFDAFGSQPPAPSVPPMRGVPPMRGVSPPQQPQQRQTGYPSSSNATGGWM
Sbjct:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGSTGMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRGNKGLVSPASDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGHPPHSTPGPQEMSGGSKVVAGTAAGGKGDLLDFDAFGSQPPAPSVPPMRGVPPMRGVSPPQQPQQRQTGYPSSSNATGGWM 280          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|299116892|emb|CBN75002.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLR--DVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRM 86
            MIRY+IP DGDD SHPN+F LP  +     +R  DV +HFPLPG YHFRFK +         VW+D+ +  A +P+ DG + AK++R+
Sbjct:    1 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKF----RDAFVWVDIADPGAAVPSCDGVFTAKITRL 84          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|953490546|emb|CEG46200.1| (apicomplexan specific region near n-terminus [Plasmopara halstedii])

HSP 1 Score: 92.4337 bits (228), Expect = 1.851e-18
Identity = 79/254 (31.10%), Postives = 114/254 (44.88%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRME-MPSKPTAAGSTGMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRGNKGLVSPASDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGHPPHSTPGPQEMS--------GGSKVVAGTAAGGKGDLLDFDAFGSQPPAPSVP 245
            M+ Y++P DGD + H N+  LP   Q   RL  V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  I+K+SR++ E +  KP        + +S +   +     TS+A  P S T+           R +   V  A +ND  GL  +  PSS   +  + +P   + NS+ P          A  H     P P   +        G S    G   G  G  + F+  GS  P+P  P
Sbjct:    4 MLNYFVPEDGDTSDHLNVVPLPRVEQL--RLLHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVISKISRVQRESLIRKPER------TETSEAQREATDLIETSEA--PSSPTK-----------REDPKPVQKAFNNDLVGLMTDPVPSSLPQTPSAPSPTPPNTNSAPPQTARDPFDVFAGNHATPMRPAPISANMAATSVPRGLSPTTMGNHGGAYGGQVGFNPMGSGSPSPMAP 232          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|695415650|ref|XP_009526624.1| (hypothetical protein PHYSODRAFT_285950 [Phytophthora sojae] >gi|348677749|gb|EGZ17566.1| hypothetical protein PHYSODRAFT_285950 [Phytophthora sojae])

HSP 1 Score: 92.0485 bits (227), Expect = 2.810e-18
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKP 94
            M+ Y++P DGD + H N+  LP   Q   RL+ V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  I K+SRM+ E  ++P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLPRVDQL--RLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRMQRESSTRP 91          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|1214712712|gb|OWZ23639.1| (hypothetical protein PHMEG_0001443 [Phytophthora megakarya])

HSP 1 Score: 92.0485 bits (227), Expect = 3.513e-18
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGST 100
            M+ YY+P DGD + H N+  LP   Q   RL+ V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  I K+SR++ +  ++P     T
Sbjct:    4 MLNYYVPEDGDSSDHLNVVPLPRVEQL--RLQHVKKSFPLPGAFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRQSSTRPAERTET 97          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|675167803|ref|XP_008892786.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566022838|gb|ETI45749.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567960134|gb|ETK85698.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567988857|gb|ETL39127.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568018063|gb|ETL92240.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568048497|gb|ETM45545.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568106309|gb|ETN20939.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570326443|gb|ETO74391.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570950315|gb|ETP15572.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570983892|gb|ETP43635.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 91.6633 bits (226), Expect = 4.715e-18
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKP 94
            M+ Y++P DGD + H N+  LP   Q   RL+ V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  I K+SR++ E  ++P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLPRVEQL--RLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRESSTRP 91          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|675167805|ref|XP_008892787.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566022839|gb|ETI45750.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567960135|gb|ETK85699.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567988858|gb|ETL39128.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568018064|gb|ETL92241.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568048498|gb|ETM45546.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568106310|gb|ETN20940.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570326444|gb|ETO74392.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570950316|gb|ETP15573.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570983893|gb|ETP43636.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297] >gi|970639092|gb|KUF82331.1| hypothetical protein AM587_10007432 [Phytophthora nicotianae])

HSP 1 Score: 91.2781 bits (225), Expect = 5.629e-18
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKP 94
            M+ Y++P DGD + H N+  LP   Q   RL+ V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  I K+SR++ E  ++P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLPRVEQL--RLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRESSTRP 91          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|301101128|ref|XP_002899653.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103961|gb|EEY62013.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 89.7373 bits (221), Expect = 2.012e-17
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKP 94
            M+ Y++P DGD + H N+  LP   Q   RL+ V++ FPLPG +HFRFKT  +GT     VW+DV  DA  +P F+G  + K+SR++ E  ++P
Sbjct:    1 MLNYFVPEDGDSSDHLNVVPLPRVDQL--RLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVVCKISRVQRESSTRP 88          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|325186914|emb|CCA21458.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.1965 bits (217), Expect = 7.814e-17
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMR 87
            M+ Y+IP DGD + H N+  LP   Q    L+ V+++FPLPG +HFRFKT+ +GT     VW+D+T+    +P++DG  ++K+SR+R
Sbjct:    4 MLNYFIPEDGDTSDHMNVVPLPAVDQL--TLKHVKENFPLPGDFHFRFKTQFEGT----YVWLDLTDGNDVVPSYDGIIVSKISRIR 84          
BLAST of EWM21779.1 vs. NCBI_GenBank
Match: gi|855314145|ref|XP_012898418.1| (uncharacterized protein [Blastocystis hominis] >gi|300176705|emb|CBK24370.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 85.5001 bits (210), Expect = 1.125e-16
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    2 IRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRM 86
            + YYIP DGD+A HPN+  L  +  Q   L+D+R+ FP+PG Y+FRFK     +     +W DVTED+  +P FDG    K +R+
Sbjct:    7 VLYYIPEDGDEADHPNVMTLDKNASQ-VTLKDIREAFPIPGTYYFRFKRTFKNS----WIWFDVTEDSEVVPKFDGLIFVKATRL 86          
The following BLAST results are available for this feature:
BLAST of EWM21779.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102114|gb|EWM21779.1|0.000e+0100.00DIX domain containing protein [Nannochloropsis gad... [more]
gi|299116892|emb|CBN75002.1|1.422e-1847.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|953490546|emb|CEG46200.1|1.851e-1831.10apicomplexan specific region near n-terminus [Plas... [more]
gi|695415650|ref|XP_009526624.1|2.810e-1845.74hypothetical protein PHYSODRAFT_285950 [Phytophtho... [more]
gi|1214712712|gb|OWZ23639.1|3.513e-1843.00hypothetical protein PHMEG_0001443 [Phytophthora m... [more]
gi|675167803|ref|XP_008892786.1|4.715e-1844.68hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675167805|ref|XP_008892787.1|5.629e-1844.68hypothetical protein, variant 2 [Phytophthora para... [more]
gi|301101128|ref|XP_002899653.1|2.012e-1743.62conserved hypothetical protein [Phytophthora infes... [more]
gi|325186914|emb|CCA21458.1|7.814e-1743.68conserved hypothetical protein [Albugo laibachii N... [more]
gi|855314145|ref|XP_012898418.1|1.125e-1643.53uncharacterized protein [Blastocystis hominis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8924rna8924Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications