rna8923, rna8923 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8923
Unique Name	rna8923
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1794
Alignment location	KK037250.1:494527..495749 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF179
Orig transcript id	gnl\|cribi\|Naga_100188g4.2460.mrna
Orig protein id	gnl\|cribi\|Naga_100188g4.2460
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:494527..495749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100188g4	gene8652	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8923	rna8923-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21777.1	cds8893	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:494527..495749-
coding sequence from alignment at KK037250.1:494527..495749-

mRNA sequence

>rna8923 ID=rna8923|Name=rna8923|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp
AACGTTCACTTTAAAAAACTCTACCGCTCACGTGCTACCGACAGACAGTC
CATATGTCTCTTCGCTCTAGTGCATCGGCGACCACCAAAGGCCAACGCAA
CTATAGGAGTATGCTGCGGCGCGTGTGGCAGTTCCTCCTCGACCGCTTTC
TCGTGTCCTTTAATGGCCTGATTACCGTGTGGCGTCTTGCCCTGCATTGG
GTGAACAGTTACATTCTATATTACGACTACGGAGGAAAACCTGCCAATGA
TTTTCACCATAAGGCGGTTTTAATAGGAGACGGATTGGCGCAAGGTTTTG
GGTCGTGGGTTTCATTAGGGAACACGTCGGGTCCTATGCGTTACCTGAAC
GAAGAAGTGAGGCGGAATGCGGCAGTAAAAATGGAGTGGGTGTTTTTTGA
ACGCGGAGCTTTACATAGCACCACTCAAGATTGGATGCCTCATGAAAGCG
AAAACAAAGGCGTGGGGACGTCCGAAGCGGCGAGGCCGGAGCCACAGGGT
GAAATTCGCGGAGACCACCCAGAAAGCGAAGACTCCTCCCTCCTCCAGCC
CCTCCCTGCGATCAAGCCCCCGCGGTCGCTGTTGGATGCCGTGCTCTCAA
GCCGAAGTGGGCGCGATGCCTGCGTGTACATCGTCATGGTGGGTTTGCAA
GACCTTCTCCGCACGAAGGATGCCGGCGCCCTCTCGGCCCTGGCGGCTGG
GGGAGACGGAGCGACACAGACCGGGCGCATCCTCCCTTCCACTGCCCTTG
GCACCAACAGCGAAACACACGGGATGGACAGGGAGCCTTCGAGCGCGAGG
CCTTGGTGTCGAACAGTCAGCCACCTCCGCGCCATCCTCCTCCACCTCTT
GGCTCAACCCCACAGCCCGCACGTCTGCCTCTGCACGCTGCCGACGGTGG
GGGTGCCTTCCTCCCTCCGCGCGCGGGCCATCAAAGGCGTGAACGCCCAG
ATTGCCTCTATGGTGCGGTCTTTGCCCCCTGTCCCTTCACCTGCCTCCCA
TCCACAGGCACCGCGGCCTCCAGTCACCCTTGTGGATCTCAGCCAGCGCC
GAGTCTCACGCCCGGAGGGAAGGGCCTTGGACGGGGTGCATTTCAACTCG
ACGGGGTACAAGAGCATGGCAACGGCGGTCTTGGAGGAACTGGCGCCGGT
CATGGTCCGGCATGAATGGGCCATATTGCAGGGATTCTTGTCGGGGAAAA
AGAGGAGGGACAAGAGAAGGCCGGATGGGTGGCTGGGGGGGTGGCTAAGG
AGGGGAGGAAGGGAGGGCGAGAAGGAGAAGGTGGGGTGAGCGAGGGCAGA
GGGCCTAAGGCCCACGCATGTATTCTATTTTTCTTTGAGTGCCAACAAAT
GCATTTACCCGCCAATTGCGACACACAAGGGGCTTCGTTTGATTTGCATG
TGGTCGTGGGGTCCCGTGGCTGACCCTAGTAGGTGAAGGGGGCGGTGTGC
CTCCTGCAACGGACGCTCGCCCCCCCTGTCCTTCCTATTCCTCTTCGCCG
TCCGCGTCATAGCCTCTCTCTCGGGGCAGGTAGTGTCTTCGAAGCGTCCG
CCAAAGCTCCCGGTCCAGGGCCAAGCCTTGTCTCAGCACCGCGCGGGCAA
CACCCTCCCCTTCCCCTCCCTCTCCCTCCATCACGTCCCAGCTGCCTTTC
AGTACCTGGTCCTCCAGCTGTCCCGGACCCCATGACATGTAATTGAACCA
CCATTTGAATTGTGATCGATCCAGTCCATGCTCTGCCTTGTTTTCTGCGG
GGGCGAGAATTTGATGGTCAGTGGGATGAGTTTCGTAACAATGA

protein sequence of rna8923

>rna8923-protein ID=rna8923-protein|Name=rna8923|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MPFTLSLILGLSFLVQSTSISAFHHLHSSIQLLEGSRAQRRGRRSTTLSL
DKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHD
SETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLH
PYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNY
MSWGPGQLEDQEGQGGRASVAGGTPPPSPTRVSHGTPRPHANQTKPLVCR
NWRVNAFVGTQRKIEYMRGP

mRNA from alignment at KK037250.1:494527..495749-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8923 ID=rna8923|Name=rna8923|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp|location=Sequence derived from alignment at KK037250.1:494527..495749- (Nannochloropsis gaditana)
ATGCCCTTTACGCTCTCCCTTATTTTAGGCTTGAGTTTCCTGGTCCAAAG
CACTAGCATCTCCGCATTCCACCACTTGCATTCGTCTATTCAACTACTTG
AGGGGTCACGAGCGCAGCGTCGTGGTCGCCGGAGTACGACGCTTTCACTC
GACAAACCATTGCTCGCTGAAGGCATCAATATACGCAGCCTCCCTGCAGG
CGTACCCCCGGCACTCCAACAAGGCCAGATCCTGGTAGCAAAACCATGGG
AGTACAACCACTTCACAAGCAAAAGCTGCTTATTCCTGTACAAGCATGAT
TCTGAGACTGGCTCCCGCGGGGTTGTCTTGGAGAAGCCGACCGCCTTTAC
CTTGTCCGAGCTCGCGCCGCCCTTTGCGGCATCCGTCTTCGCGAATCACA
CCGTCTTTTTGGGCGGGGAGCAAGGAGGAGACATGGCCGTGCTGTTGCAT
CCGTACAAGCACGTGCCAGGAGTGCGATCCGTGGGTGGCGGGCTTTACTA
TGGGGGTTTGAGTGGAGCGGAGGCCATGTTCAAAGAGCAGGAGGGTACGT
GAATCGGGACAGGCGGGCGCAATGTCCCTGCAACCATGTGTGGCGTCTCT
TCTTTGTGGCTTGACCACAGAAAATCGCTCGCTGTCGTTATGGCTAAGGC
ATGCATGCAGCTGAAGAAACATGGCTCGCAATGCTCTCCACGTCTCTCCT
CCCTCCGCGCCAGTCCATTGTCCCTTCCCTTTCTCATTGTTACGAAACTC
ATCCCACTGACCATCAAATTCTCGCCCCCGCAGAAAACAAGGCAGAGCAT
GGACTGGATCGATCACAATTCAAATGGTGGTTCAATTACATGTCATGGGG
TCCGGGACAGCTGGAGGACCAGGTACTGAAAGGCAGCTGGGACGTGATGG
AGGGAGAGGGAGGGGAAGGGGAGGGTGTTGCCCGCGCGGTGCTGAGACAA
GGCTTGGCCCTGGACCGGGAGCTTTGGCGGACGCTTCGAAGACACTACCT
GCCCCGAGAGAGAGGCTATGACGCGGACGGCGAAGAGGAATAGGAAGGAC
AGGGGGGGCGAGCGTCCGTTGCAGGAGGCACACCGCCCCCTTCACCTACT
AGGGTCAGCCACGGGACCCCACGACCACATGCAAATCAAACGAAGCCCCT
TGTGTGTCGCAATTGGCGGGTAAATGCATTTGTTGGCACTCAAAGAAAAA
TAGAATACATGCGTGGGCCTTAG

Coding sequence (CDS) from alignment at KK037250.1:494527..495749-

>rna8923 ID=rna8923|Name=rna8923|organism=Nannochloropsis gaditana|type=CDS|length=2439bp|location=Sequence derived from alignment at KK037250.1:494527..495749- (Nannochloropsis gaditana)
GAAGGACAGGGGGGGCGAGCGTCCGTTGCAGGAGGCACACCGCCCCCTTC
ACCTACTAGGGTCAGCCACGGGACCCCACGACCACATGCAAATCAAACGA
AGCCCCTTGTGTGTCGCAATTGGCGGGTAAATGCATTTGTTGGCACTCAA
AGAAAAATAGAATACATGCGTGGGCCTTAGAAAACAAGGCAGAGCATGGA
CTGGATCGATCACAATTCAAATGGTGGTTCAATTACATGTCATGGGGTCC
GGGACAGCTGGAGGACCAGATGCCCTTTACGCTCTCCCTTATTTTAGGCT
TGAGTTTCCTGGTCCAAAGCACTAGCATCTCCGCATTCCACCACTTGCAT
TCGTCTATTCAACTACTTGAGGGGTCACGAGCGCAGCGTCGTGGTCGCCG
GAGTACGACGCTTTCACTCGACAAACCATTGCTCGCTGAAGGCATCAATA
TACGCAGCCTCCCTGCAGGCGTACCCCCGGCACTCCAACAAGGCCAGATC
CTGGTAGCAAAACCATGGGAGTACAACCACTTCACAAGCAAAAGCTGCTT
ATTCCTGTACAAGCATGATTCTGAGACTGGCTCCCGCGGGGTTGTCTTGG
AGAAGCCGACCGCCTTTACCTTGTCCGAGCTCGCGCCGCCCTTTGCGGCA
TCCGTCTTCGCGAATCACACCGTCTTTTTGGGCGGGGAGCAAGGAGGAGA
CATGGCCGTGCTGTTGCATCCGTACAAGCACGTGCCAGGAGTGCGATCCG
TGGGTGGCGGGCTTTACTATGGGGGTTTGAGTGGAGCGGAGGCCATGTTC
AAAGAGCAGGAGGGAAGGACAGGGGGGGCGAGCGTCCGTTGCAGGAGGCA
CACCGCCCCCTTCACCTACTAGGGTCAGCCACGGGACCCCACGACCACAT
GCAAATCAAACGAAGCCCCTTGTGTGTCGCAATTGGCGGGTAAATGCATT
TGTTGGCACTCAAAGAAAAATAGAATACATGCGTGGGCCTTAGAAAACAA
GGCAGAGCATGGACTGGATCGATCACAATTCAAATGGTGGTTCAATTACA
TGTCATGGGGTCCGGGACAGCTGGAGGACCAGATGCCCTTTACGCTCTCC
CTTATTTTAGGCTTGAGTTTCCTGGTCCAAAGCACTAGCATCTCCGCATT
CCACCACTTGCATTCGTCTATTCAACTACTTGAGGGGTCACGAGCGCAGC
GTCGTGGTCGCCGGAGTACGACGCTTTCACTCGACAAACCATTGCTCGCT
GAAGGCATCAATATACGCAGCCTCCCTGCAGGCGTACCCCCGGCACTCCA
ACAAGGCCAGATCCTGGTAGCAAAACCATGGGAGTACAACCACTTCACAA
GCAAAAGCTGCTTATTCCTGTACAAGCATGATTCTGAGACTGGCTCCCGC
GGGGTTGTCTTGGAGAAGCCGACCGCCTTTACCTTGTCCGAGCTCGCGCC
GCCCTTTGCGGCATCCGTCTTCGCGAATCACACCGTCTTTTTGGGCGGGG
AGCAAGGAGGAGACATGGCCGTGCTGTTGCATCCGTACAAGCACGTGCCA
GGAGTGCGATCCGTGGGTGGCGGGCTTTACTATGGGGGTTTGAGTGGAGC
GGAGGCCATGTTCAAAGAGCAGGAGGGAAGGACAGGGGGGGCGAGCGTCC
GTTGCAGGAGGCACACCGCCCCCTTCACCTACTAGGGTCAGCCACGGGAC
CCCACGACCACATGCAAATCAAACGAAGCCCCTTGTGTGTCGCAATTGGC
GGGTAAATGCATTTGTTGGCACTCAAAGAAAAATAGAATACATGCGTGGG
CCTTAGAAAACAAGGCAGAGCATGGACTGGATCGATCACAATTCAAATGG
TGGTTCAATTACATGTCATGGGGTCCGGGACAGCTGGAGGACCAGATGCC
CTTTACGCTCTCCCTTATTTTAGGCTTGAGTTTCCTGGTCCAAAGCACTA
GCATCTCCGCATTCCACCACTTGCATTCGTCTATTCAACTACTTGAGGGG
TCACGAGCGCAGCGTCGTGGTCGCCGGAGTACGACGCTTTCACTCGACAA
ACCATTGCTCGCTGAAGGCATCAATATACGCAGCCTCCCTGCAGGCGTAC
CCCCGGCACTCCAACAAGGCCAGATCCTGGTAGCAAAACCATGGGAGTAC
AACCACTTCACAAGCAAAAGCTGCTTATTCCTGTACAAGCATGATTCTGA
GACTGGCTCCCGCGGGGTTGTCTTGGAGAAGCCGACCGCCTTTACCTTGT
CCGAGCTCGCGCCGCCCTTTGCGGCATCCGTCTTCGCGAATCACACCGTC
TTTTTGGGCGGGGAGCAAGGAGGAGACATGGCCGTGCTGTTGCATCCGTA
CAAGCACGTGCCAGGAGTGCGATCCGTGGGTGGCGGGCTTTACTATGGGG
GTTTGAGTGGAGCGGAGGCCATGTTCAAAGAGCAGGAGG

Synonyms

Publications