EWM21777.1, cds8893 (CDS) Nannochloropsis gaditana

Overview
NameEWM21777.1
Unique Namecds8893
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:495206..495749 -
Alignment locationKK037250.1:494878..494966 -
Alignment locationKK037250.1:494527..494706 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21777.1
ProductProtein of unknown function DUF179
Orig transcript idgnl|cribi|Naga_100188g4.2460.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:495206..495749 -
KK037250.1supercontigKK037250.1:494878..494966 -
KK037250.1supercontigKK037250.1:494527..494706 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
Homology
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|585102112|gb|EWM21777.1| (Protein of unknown function DUF179 [Nannochloropsis gaditana])

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MPFTLSLILGLSFLVQSTSISAFHHLHSSIQLLEGSRAQRRGRRSTTLSLDKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGGTPPPSPTRVSHGTPRPHANQTKPLVCRNWRVNAFVGTQRKIEYMRGP 270
            MPFTLSLILGLSFLVQSTSISAFHHLHSSIQLLEGSRAQRRGRRSTTLSLDKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGGTPPPSPTRVSHGTPRPHANQTKPLVCRNWRVNAFVGTQRKIEYMRGP
Sbjct:    1 MPFTLSLILGLSFLVQSTSISAFHHLHSSIQLLEGSRAQRRGRRSTTLSLDKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGGTPPPSPTRVSHGTPRPHANQTKPLVCRNWRVNAFVGTQRKIEYMRGP 270          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|397645614|gb|EJK76913.1| (hypothetical protein THAOC_01294 [Thalassiosira oceanica])

HSP 1 Score: 90.1225 bits (222), Expect = 7.944e-18
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 0
Query:   61 IRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLY-----KHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPG-VRSVG-----GGLYYGGLSGAEAMFKEQEENKAEHGL-DRSQFKWWFNYMSWGPGQLED 210
            IR L  G    ++ G +LV+  +E++HF  +S +F+Y         ET  R VV++ PTAF + E++P    S  AN+T+F GG  G D  +LLH    + G V + G      G+Y GG+S          + + + GL D SQ K++FNYM +G  QL+D
Sbjct:   51 IRFLGRGDDAIIRPGSVLVSPSFEFDHFLMRSAIFVYAIGEDDQQDETIIRAVVIDHPTAFDIGEMSPT-VTSRLANNTLFRGGYDGSDAVMLLHSAGGMDGSVETTGSEIGCSGIYEGGISSI--------QKQVDAGLIDPSQCKFFFNYMEFGLKQLDD 203          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|551670232|ref|XP_005837874.1| (hypothetical protein GUITHDRAFT_103478 [Guillardia theta CCMP2712] >gi|428182032|gb|EKX50894.1| hypothetical protein GUITHDRAFT_103478 [Guillardia theta CCMP2712])

HSP 1 Score: 86.2705 bits (212), Expect = 1.170e-15
Identity = 51/143 (35.66%), Postives = 80/143 (55.94%), Query Frame = 0
Query:   71 ALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAP-PFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGG-GLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQ 211
            +++ G +LVA P E +HF   + + L +H S+ GS+GVVLE  TAF L E+AP  F       +++F GG  G D  ++LH  + V   + +G  G++ GG+       +E +E  +E      Q K++FN+  W PGQLE +
Sbjct:  116 SVEPGCVLVASPEEVDHFFRHAVVLLLEH-SDGGSKGVVLEMATAFMLQEMAPAAFLEHPLGENSLFRGGSSGNDKVIMLHALEDVQTSKPIGRHGVFAGGM-------QEVKELVSEGRASSDQVKFFFNHCEWLPGQLERE 250          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|298711783|emb|CBJ32813.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 7.993e-15
Identity = 52/154 (33.77%), Postives = 85/154 (55.19%), Query Frame = 0
Query:   63 SLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGG-GLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQG 215
            S    +   L+ G +LVA    Y   T K+   +Y+H     SR V ++K   FT+ E++      + +N+ +F GG+ GG+ A+++HP+  + G R +G  GL+ GG   A  +    EENKA+ G     FK++FN++SW  G L++Q G+G
Sbjct:   17 SFEVELDRGLEIGSVLVAGADNYGSMTFKAVALVYEHGEGGPSRAVCVDKGLDFTIGEMSTGDLGPL-SNNRLFRGGDDGGEAAIMIHPH-DIMGSRPLGDTGLFVGGFVTALDLV---EENKAKPG----DFKFFFNHLSWPAGALQEQVGKG 161          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|219130429|ref|XP_002185368.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403082|gb|EEC43037.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-11
Identity = 48/158 (30.38%), Postives = 82/158 (51.90%), Query Frame = 0
Query:   61 IRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLY----KHDSETGSRGVVLEKPTAFTLSELA---PPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVG-GGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLED 210
            +R L  G    ++ G +L+A   EY+H+  ++ +F++      D     RGV+L++PT FTL E+    P    +   ++ +F GG++GGD  VLLH ++ + G  S+G  G++ GG   A A  ++            S FK +FNY  +   ++ED
Sbjct:   64 VRFLGKGERAIVRPGVVLLAPTNEYHHYYRQAAIFVHAMGEDDDDVYVIRGVILDQPTPFTLGEMMEHNPALQKTPLKDNLLFRGGDKGGDQVVLLHNHEEI-GQSSIGVSGVFQGGFDQAMAACEKGHRQT-------SDFKLFFNYCEFTELEMED 213          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|922855463|gb|KOO23911.1| (hypothetical protein Ctob_001926 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 73.559 bits (179), Expect = 2.323e-11
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 0
Query:   75 GQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQL 208
            G +++A P  ++H+  +S + + +H  + G++GV+L   T +T+ +LAP    + FA + VFLGG+ G D   ++H    +PG   VG G+Y GG+  A            E  L   +FK+++  + W P  L
Sbjct:   26 GSVILAHPGSFDHYFLESLVLILEHGPD-GTKGVLLNHETPWTVEDLAPDAKMAPFAANAVFLGGDAGRDTITMVHGEFELPGAVEVGQGVYTGGVDAALRAV-------TEGALPPDRFKFFYKSVEWLPNAL 151          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|545365466|ref|XP_005647700.1| (DUF179-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384249675|gb|EIE23156.1| DUF179-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 69.3218 bits (168), Expect = 3.064e-10
Identity = 53/201 (26.37%), Postives = 93/201 (46.27%), Query Frame = 0
Query:   19 SISAFHHLHSSIQLLEGSRAQRRGRRSTTLSLDKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYN---HFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFA-ASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQG 215
            S+ A   +H    L   SR +    +ST    +  L A  IN            ++G +L+A P  +     + +++ +F+++H SE GS G++L KPT +T+  ++   A    F N+ +FLGG+   +   +LH +  +P    +  G+  GG   A+A   +         +  + FKW+  Y  WG GQL+ +   G
Sbjct:    4 SLVAGTEVHKVAPLHRESRRKGVSEKSTEPDEESKLWAHSINFP----------EKGCLLIAHPLVFTTQQQYFAQAVIFIFEH-SEQGSAGLILNKPTQYTIGTMSGLEALCPEFNNNGLFLGGDVSPNSMHMLHCHGQLPEAVEIIRGINMGGFDAAKAAVSQGR-------MPATDFKWFTRYSGWGAGQLQRECASG 186          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|953250687|emb|CUS37391.1| (conserved exported hypothetical protein [Candidatus Nitrospira nitrosa])

HSP 1 Score: 68.1662 bits (165), Expect = 3.722e-10
Identity = 47/158 (29.75%), Postives = 76/158 (48.10%), Query Frame = 0
Query:   68 VPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKH-VPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGGT 224
            VP  +Q+G +LVA P   +   +++ LF+ +H  + G+ G+VL +PT   L+E+          NH +F GG  G    VLL   K  +P  R +  G+Y G     E +    + N+A        F+ +  +  W PGQLE +  +G    ++ GT
Sbjct:   29 VPSPVQKGSLLVASPSLSDPNFTRTVLFIVEH-GQGGTIGLVLNRPTDVLLAEVLQDLPVLKQTNHRLFAGGPVGRTQLVLLFRLKQLLPDARHIANGIYVGTPMVLERVIAGLKPNEA--------FRAFAGFAGWAPGQLESEMREGSWGVLSSGT 177          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|676397867|ref|XP_009042211.1| (hypothetical protein AURANDRAFT_68309, partial [Aureococcus anophagefferens] >gi|323447142|gb|EGB03088.1| hypothetical protein AURANDRAFT_68309, partial [Aureococcus anophagefferens])

HSP 1 Score: 70.4774 bits (171), Expect = 4.489e-10
Identity = 43/136 (31.62%), Postives = 68/136 (50.00%), Query Frame = 0
Query:   75 GQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGG-GLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLE 209
            G ++ A   EY+HF  +S + + +H     S G+ LE PT  T+ E A          + +F+GG+ GG  A+++H    V G   +G  GLY GG+  A A       ++ +   D   FK++FN   + PGQL+
Sbjct:  867 GVVVTAPVKEYDHFLRQSAVLVIEHGDGAPSYGLNLESPTMMTIGEAAAGVVTGPLGENQLFMGGQHGGRGAMMVHATPGVAGATRLGDTGLYIGGIKDAMARV-----DRGDAACD--DFKFFFNLXQFPPGQLD 995          
BLAST of EWM21777.1 vs. NCBI_GenBank
Match: gi|1088941941|emb|SEE66351.1| (putative transcriptional regulator [Tenacibaculum sp. MAR_2010_89])

HSP 1 Score: 66.6254 bits (161), Expect = 1.050e-9
Identity = 42/140 (30.00%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   73 QQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPY-KHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQ 211
            Q+G++L+A+P   N  + K  + L    SET S G +L +P  +TLS+L P     +  + TV+ GG    D    +H   + +P    V  G+Y+GG       F   +E+   H +  S  +++  Y  W P QL+D+
Sbjct:    7 QKGRLLIAEPSILNDNSFKRAIVLLTEHSETSSVGFILNRPLHYTLSDLVP----DINCDFTVYQGGPVEQDNLYFIHKIPELLPNSVEVTDGIYWGG------NFNYLKEHLNNHKVKPSDIRFFLGYSGWEPTQLDDE 136          
The following BLAST results are available for this feature:
BLAST of EWM21777.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102112|gb|EWM21777.1|0.000e+0100.00Protein of unknown function DUF179 [Nannochloropsi... [more]
gi|397645614|gb|EJK76913.1|7.944e-1835.80hypothetical protein THAOC_01294 [Thalassiosira oc... [more]
gi|551670232|ref|XP_005837874.1|1.170e-1535.66hypothetical protein GUITHDRAFT_103478 [Guillardia... [more]
gi|298711783|emb|CBJ32813.1|7.993e-1533.77conserved unknown protein [Ectocarpus siliculosus][more]
gi|219130429|ref|XP_002185368.1|1.006e-1130.38predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|922855463|gb|KOO23911.1|2.323e-1130.60hypothetical protein Ctob_001926 [Chrysochromulina... [more]
gi|545365466|ref|XP_005647700.1|3.064e-1026.37DUF179-domain-containing protein [Coccomyxa subell... [more]
gi|953250687|emb|CUS37391.1|3.722e-1029.75conserved exported hypothetical protein [Candidatu... [more]
gi|676397867|ref|XP_009042211.1|4.489e-1031.62hypothetical protein AURANDRAFT_68309, partial [Au... [more]
gi|1088941941|emb|SEE66351.1|1.050e-930.00putative transcriptional regulator [Tenacibaculum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8923rna8923Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications