rna892, rna892 (mRNA) Nannochloropsis gaditana

Overview
Namerna892
Unique Namerna892
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3312
Alignment locationCM002456.1:662110..662711 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g1.863.mrna
Orig protein idgnl|cribi|Naga_100022g1.863
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:662110..662711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g1gene855Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna892rna892-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29764.1cds892Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna892 ID=rna892|Name=rna892|organism=Nannochloropsis gaditana|type=mRNA|length=3312bp
ATGCCCGTTATTATGGTGGAAAGATCATCTAGTAAAGCAACACTCATATG
CGCGATGCTCTGCGCTGCCACTGTCACTGCACAAGCATTTATCGGCCCCA
GCACTCCCTGCTTCAAGCCCTGGATCCTGCGCTTATCTCACCGACTGCAC
GAGGCAAGCAACAACCAGGCTGGCACAGCCCCACCGTCCTCTCAGGCAAT
AGCTCCCTCAAAGAAGCCGTCCTCCTCATTTATCTCAAAGACCATTCCCC
CTTCGGCCTCTGTCGGTGACTTGCTCGAGTACTTAGGGGACCATTCCACA
CGCCGAAGAGCCGCACGCCGGCTTCTGAGGCAGTCAGAGCAGGTGCCAGC
AGACGGTCTCGTCGCGTTGTTGAAGGCAACTTGCAGACTCGGAAACACAA
ATGGGTCCCAGAAAATTCTGGCCATGCTGCGGGAAACGGGCACGCAACCG
GACGCGGCCCTCTACGAGGCCCTCCTCAGGATCGCCAACAAGCGCTACAT
GTGGGACCTGTCGCTTGCTCTTCTCTGCGAAGCAGAGCAAAGAGATGCCC
TGACCTTGACGTCGGCCATGCTTGGTGGGACGCTTTACACGTGCCTACAG
TGCGCGCGAGCTCAGGAGGCTGTCAAGCTATTGAAGCGCTTTGAACAGCA
TGGGGCCACGCCAGGGAGCAATCTGATGGTGCTGATGGTACGGCTGCTGA
GTGACAAAAATATGGTGCCAGCCTTAAGGGAGGTCCGAAAAGCCATTGGC
GCGCTGAGTGTAGAGGGCGATGCAAGGCTTTACACGGAATTGGTTTCGGC
CTTCGGGCGCGCGAGCAGCTATGACGACGTGGTGGCGAGCGCGAGGCTGG
TGGAGGGGACGGGTGTGGTGGAGAAGGGTAGGATCTACAGTACGGCGGTA
GCGTCGCTGCTAAAAGGAAATTTGACTGCCCCTGCACGGAAGCTGTACAT
CCAAGCGCTTGAAGATGGTGCCGTAATTGGAGGGAAGGGGTTCGAGGCCC
TGGTGGCCGGGGCGGCCGCCTCGACCGACCCTCTGGAGGGTGTCTTTTAC
CTCAATGAGATGAGGAAACACGTCGCTTCCGCACCTGCCTCTGAGGCGGA
GGGAAGCATGGAGAAAGGCCTGCTCGTACCGGCTCACGTCTACCGGAGGC
TTATAGGCGCCTGTCTTCGCAGCAGGCACCTTTCAGAGGCCGCAGACTTG
GTCATCGAGTACTACAGCCAGAGCCCCGCCGCTTTTGCTGATGCCGTCCC
TTTCAACAACCTGGTCAAGGCGATCTGCGACGCGGGTTCCGCGCAGGACC
GGGCCCTGGCTGTGCAGGTCTTCGAGGCCCTCTCGGCCGTCCAGCCCGCC
GGAGCTTTCGTCGGGAACTCGTTCACCAGCATGGTCCTGATTGGAGCCTA
CCGGCGGGTGCAGGAGCTGGACAAGATCGTGGCTATGCACGAGAGCATGC
GCAGGGCGGATGTTGATGTCTGGCTGCCGGCGGCTGGCAACATTATGCAC
GCATACGCTCGGCAAGGGAAGGTGGAGGAGGAGCTCGACACTTTTCAAGC
CCTGGCGGCTTCGCCCGCCCAGGTCGTCTTGGGTGAATCTCGCAAACACT
TGGGAGCAAAAGGTAAGAGGAAAAAGACACCCTTTGCCGCCAACCCCTCG
CCCTTGCTTGCCTCCTCCACCGTCGAGGCTCCCAGCTCCTCAAAGGAGGA
GAAGCACCTGTTCCTGTGGAGCCGTATCCTCTCGCGCGCAATGTACCTCT
CTGCGGAGCTTGGTCGCCTCGACGTGGCATCCCTGGTGCTGGCTCTTCTT
CAGAAGTACTCGGGTCTACGAGCAGCCAGTCCTGCGGATTACATGAACCT
GATCAAGGCCTTCGGTCAGGCGAAGCGGCCGGGGGACGCGCTACGAGTCC
TGCATGTCATGAACCAAGGCAAGGGCGACGCCAAGCCCTCCACCCTTCAC
TACAACGCCGTGCTGCACGCGTTTTCGCGAGTGGAGCGTTTGGAAGAAGC
GGAGGCGGTTTTCCAAGAGATGAGAATGCGTCAAGTACCGATGGACAGCA
CCACTTTCAACATGCTCATCTCGGGCTTTGAGAGAGCGCGGCAGCCAGAT
CGGGCGTTGGCCCTCTACGATGAAATGGAGCGGCGGGGTATCCCCGTCGA
CAAGTACGTTTTGAACAGTTTGATCAGCGTGACTGCGGACCTTAGGAACC
GTACTCTTGCGAACGGACTATTGACACGCCTGAGAACCCTCGCTGGTGAT
CCGCAAGAGACCTGGAATGACGTCATGTTCGGCGCCCACATGCACGCCCT
GGTCAAGGCGGATGTGGCCAGTCGACGCGAGGCGCTCGCGCTCCTAGAAA
CCTTCAAATCTGGTGGTCGGACTCCCAATACGATCATGTACAACGAAGCG
CTGCACGCCACGTATCGGTTGGTGCGAGAGGATCCTGAGGGCATGGCGGA
GAAAGCTTTGGGGCTTTACCACGAGATGCTGGCGCAAGGCCAGGCCTCCG
CACCCTCCCCCCTTACCTACCGCCGTCTATTCAAGTGCTTGAAACAAGCT
TGCCGCTTTCAAGAGTTGGTGGACGTGGCCGCCTCCCTACCTCGGGAGAT
GCTGGTTTCCCAGGAACGGCTCGGGATTCCTGTGATCGTTGCCTCCCTGC
GTGCGGGCCAGCCAGACCGTGCGCGAGACCTCTTAGGTGACCTCGTCTTA
AAGCCCAACACCTCGTACTCGACATACCGATGGGCCACGTTCATTTATTG
CGCGAAGTTGGATCCGCCCGATGTGGCAGCGGCAGAAACCATTATAGGCT
TGGTCGAGGAGCAAGGCTGGAAACCCGACCGAGGTTTTTATGCTTCGTTG
TTGCGAGGCTGCTGGTTATCGGCCCCGAAACAAATCGAGAAAGCTTTCGA
TGTCTATCATAATATGCCGCTTGAATATCAAGGTGGAGACCCCGCGGCTG
TGGCTGCGCTCTGTCATGTGGACCGCGGTAGATTGGACAGGGTAACGGAA
TTGCTCCGAGCGATGAGAGAGCGAAATGATGTGGCTGCTCCAGACCTCCT
CGCCACGCTCCTGGGGAATCTCCTCTCGTGCGAAAGCTGGAAAAATGCGT
TGTCTGTGGTGGAATTGATGATCGATTTCGATATTGCTCTGACGCCGCCT
CAGCGTCGCAAAATCACTTCTCTCGTCCACGCGAATCCCAAAGGGCCAGC
TCTCGAAGTGCTAGAGGGACTCGGATTACTGCGTGTGCGCAACGGAGATC
ATGCAAATGGTGGAATGGATGCAGATCTGGCGGGTCGGGAAGAGGAAGGC
GAGAAAGAATAA
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protein sequence of rna892

>rna892-protein ID=rna892-protein|Name=rna892|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MMTPIHNEDSAWKHDLRRPRDTLRPLDISCIHLQTTREHQGLRETWNSVN
PSTAHSIFSLSSPVERLLRSVKITWPFPHPCGDGCICALLPQELCIEGTR
PGSPDTSV
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mRNA from alignment at CM002456.1:662110..662711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna892 ID=rna892|Name=rna892|organism=Nannochloropsis gaditana|type=mRNA|length=602bp|location=Sequence derived from alignment at CM002456.1:662110..662711- (Nannochloropsis gaditana)
ATGATGACACCAATCCACGTTTAGACCTTTTCACATGGCTATATGGCGCG
AGTTCGATCCTCCAAGGGTCCCTTTTTCGGGGTCCATCGCCGATCCGAGT
CACGTGTCAAACCGTCGCCTCGGACTTCCCCCCTGTGCTCTCTTCATGGG
AGAACGAAGACAGCGCGTGGAAACACGATCTGCGTCGTCCCCGTGACACA
CTAAGAGTGAGCGCCCTGCGGTCCGTGAAGACTGCGAGCACGCGCCTTAG
GAGATGAGAGCCTCTCGACATCTCCTGCATACATCTGCAGACGACAAGAG
AGCATCAGGGGCTAAGGGAGACATGGAATAGCGTCAACCCATCGACAGCG
CATTCCATATTCTCCCTAAGTTCCCCTGTGGAGCGATTGCTTCGATCAGT
GAAGATCACCTGGCCCTTTCCTCGTTGAAAGTGAGGCTCAGGACGGTCGG
AAGGTGTTGTATTGGTACGCTTTGACGTAGCCTTCTCGTTGACACTTTGA
CTTGCATAAGACCCTTGTGGCGACGGCTGCATTTGTGCACTGTTGCCCCA
AGAACTATGCATCGAAGGCACACGCCCTGGAAGCCCCGACACCTCTGTTT
GA
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Coding sequence (CDS) from alignment at CM002456.1:662110..662711-

>rna892 ID=rna892|Name=rna892|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002456.1:662110..662711- (Nannochloropsis gaditana)
ACCCTTGTGGCGACGGCTGCATTTGTGCACTGTTGCCCCAAGAACTATGC
ATCGAAGGCACACGCCCTGGAAGCCCCGACACCTCTGTTTGACCTCTCGA
CATCTCCTGCATACATCTGCAGACGACAAGAGAGCATCAGGGGCTAAGGG
AGACATGGAATAGCGTCAACCCATCGACAGCGCATTCCATATTCTCCCTA
AGTTCCCCTGTGGAGCGATTGCTTCGATCAGTGAAGATCACCTGGCCCTT
TCCTCAACGAAGACAGCGCGTGGAAACACGATCTGCGTCGTCCCCGTGAC
ACACTAAGAATGATGACACCAATCCACACCCTTGTGGCGACGGCTGCATT
TGTGCACTGTTGCCCCAAGAACTATGCATCGAAGGCACACGCCCTGGAAG
CCCCGACACCTCTGTTTGACCTCTCGACATCTCCTGCATACATCTGCAGA
CGACAAGAGAGCATCAGGGGCTAAGGGAGACATGGAATAGCGTCAACCCA
TCGACAGCGCATTCCATATTCTCCCTAAGTTCCCCTGTGGAGCGATTGCT
TCGATCAGTGAAGATCACCTGGCCCTTTCCTCAACGAAGACAGCGCGTGG
AAACACGATCTGCGTCGTCCCCGTGACACACTAAGAATGATGACACCAAT
CCACACCCTTGTGGCGACGGCTGCATTTGTGCACTGTTGCCCCAAGAACT
ATGCATCGAAGGCACACGCCCTGGAAGCCCCGACACCTCTGTTTGACCTC
TCGACATCTCCTGCATACATCTGCAGACGACAAGAGAGCATCAGGGGCTA
AGGGAGACATGGAATAGCGTCAACCCATCGACAGCGCATTCCATATTCTC
CCTAAGTTCCCCTGTGGAGCGATTGCTTCGATCAGTGAAGATCACCTGGC
CCTTTCCTCAACGAAGACAGCGCGTGGAAACACGATCTGCGTCGTCCCCG
TGACACACTAAGAATGATGACACCAATCCACACCCTTGTGGCGACGGCTG
CATTTGTGCACTGTTGCCCCAAGAACTATGCATCGAAGGCACACGCCCTG
GAAGCCCCGACACCTCTGTTTGACCTCTCGACATCTCCTGCATACATCTG
CAGACGACAAGAGAGCATCAGGGGCTAAGGGAGACATGGAATAGCGTCAA
CCCATCGACAGCGCATTCCATATTCTCCCTAAGTTCCCCTGTGGAGCGAT
TGCTTCGATCAGTGAAGATCACCTGGCCCTTTCCTCAACGAAGACAGCGC
GTGGAAACACGATCTGCGTCGTCCCCGTGACACACTAAGAATGATGACAC
CAATCCAC
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Synonyms
Publications