rna8917, rna8917 (mRNA) Nannochloropsis gaditana

Overview
Namerna8917
Unique Namerna8917
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3128
Alignment locationKK037250.1:476613..477498 +

Link to JBrowse

Properties
Property NameValue
Productu6 snrna-associated sm-like protein lsm4
Orig transcript idgnl|cribi|Naga_100065g3.7384.mrna
Orig protein idgnl|cribi|Naga_100065g3.7384
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:476613..477498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100065g3gene8646Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8917rna8917-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21793.1cds8887Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8917 ID=rna8917|Name=rna8917|organism=Nannochloropsis gaditana|type=mRNA|length=3128bp
GCACTGAGACAGGGATAAGGTGTCAAGCCTGGCCATATTGGGGCGGAGTG
TGGACTGATCATGCTGCTGGGGGTGCTATTGCTGCTGGCGGGTTGCGAAG
CCTGGGTTGGCCCTGGTACCTTACCACACGGGAATCAAAGGCATCTTTCG
ACCACAACCATATCATTCACACCGATGGCACGCTGGAGGAGGCATTGGGG
GCCTCACGTGCCAAATTCTGGACCGGAATGGGATGGTCTTTGTCCAGTCG
TCCTGCGCGCTGCCAAGCGATGGGGTGGTATGCGTAAAAAAATTGAGAAC
GACGACGGCGATGGAAACAAACGTACTGCTCAGTCGAATTCAAAAGGAGC
TAAACCATTTGTTCCTAAGGCGGGGAAAAAGGCGGCGGAGTCAGAAGAGG
AGGAGGATGTTGATCCATTGGCCATTAGCGACGCGATGATCGAGGAAGTC
ACAGGCCGGGTGCATGGAAGAAAGTTGTCGCGCTCCGAGGCTTCAGGGAA
AGCGGCGTCGGACCGAAGGTTTAAGAATGAGGAGGGCGAAGGCGAAGGGC
GGGGCACTGAGTCGGGAGGGGTGGAAAGGGAGCCCCCCGCCTGGTCCATG
CGCTGGCTGGAAACCCTCTCGGAGGAGGAGATGCTGGCCTTGGACAAGAA
GAGACTGATGGATTTGCTCTTGAAAGACATTGAGAGCGATAAAGAGTGGG
CGGGAGTCCCTGTCCAGGCCCTTTTTGATCCTGACGAGGAGGTGGACCCC
AAGACGGACTTCTACGACGAAGGCATGACCGAGGAAATTTTCGGAAAGAT
GCCTGAGGGAGAGGACGAGGACGAGGAGGCGATGGATTTGGACGATATTT
TGGGGCCGCTAGGAGACGGAGGGGAGGAGGGGGAGGAGGAGGAAGGAGAG
GAGGATTTGCTCCGTTTCCTCAGCGGGTCTCAAGAGGGGAGGAGGTTAGC
CCGAGATCTTTTAAACGACGACACGGTCAGGGATGATGAGGAGGACGAGG
ACGTGTTTGACGTGGGCGGGCACCTGCGGGCCGAGGAGATGAGCTCGGAG
GAGGTGGAAGATGGTTTAAGGCACCTGTGGCGGAACTTGAAGAAGGGCTA
TGGGGAAGACACGGGGGGCGGGGAGGAGGGCGAGGAGGAGGCGGCCGAGA
AGGAAGGAAGACTGCGGGACGAGTTGGAAGATCCGGCCGCCGTCCTGACG
GCCCTGAAAGCGAGCGTGGAAGGCGGGGATCTGGCGGCTGCCTCGGAGTT
GCTTCAGCGAATGGAGGAGATGGGTCTGGAGGTGGGGGACCTGGAGGAGG
AGGTCGAGGCGCTGGACAGCTACCGGGCGCCTTTGGGGAACAAGAGAGCC
GTGGCGAAGGTGCCGCTCGTGGAGGAGGCGGAGGAGGAGGGGGGAGAGTT
GCAGGTGCCTCTGTCGGTGGGACGTTTGAGCGAGGAGGAGGTGGCGGCGA
TGAAGTCGGTAGGGGCGTGTGTGGGCATCGACCTGGGGACGACGAACTCG
GCCCTCTCCCTTGTCAAAGACGGGAAGGCCTTGATCTTGCCGTCCAGAAC
CACGGGGGCCGCGCTCACCCCCTCGGTGGTCCGGTTCCGGGGCAAGGAGG
TTGTGGTTGGGGAGGCCGCGCGGGCCGTGGCTGTGGCGGACTCGGACAAC
ACGTTCTCGTCGGTGAAGCGGCTCATGGGCCGGGGCCTGGAGGAGATGCT
GCAGGAGAAGGAGATCTTGGGGTCGCTGAACCTGGTGCGACGGACGGTGG
AGGAGGCCGGCGGGGAGGACGAGGGGGGCGTCCGGGCCTGTGTGGCCATG
CGCTGTCCGGCCCTGGGTAGGGAGGTGACCCCCGAGGAGGTGTCGGCCGA
GATTTTGAAGACACTCCTTGGGGACGCGGCTGCATACTTGGAACAGCCCG
TGAACAGGGCGGTCATCACCGTGCCCGCATACTTCACACCGGCTCAATGC
GCGGCCACGGAGCGTGCGGGGGCATTGGCGGGCTTGCAACGGATCAAATT
GTTGCGGGAACCCGAGGCGGCCGCCCTGGCCTACGGGCTGGACCGCATGT
TGGGGGAGGACGAACTGATCATGGTGTTTGACCTGGGGGGGGGCACCTTC
GATGTGAGCGTCTTGGAAGTGGGGGACGGGGTGGTGGAGGTCCTCAGCAC
CTTTGGGGACGCGACCTTGGGCGGGAACGACTTCGATAAGCGCGTCGCGG
ACTGGCTGGTGGGGGAGTATAGGAAGCAGCACGGGGGCCAAGGCCCGCCC
TCGGACAGGACGAGTCAGAGGAAGCTTATGGAGGCGGCTGAAGGCGCGAG
GGTGCGCTTGTCACAGGCCTCGGAAACCGAGGTTCGAATCCCGGCGCTGG
GGGGCGAAGGGAAGGATTTGGGCCCGTTGACGCTGACGAGGGCGGGAATG
GAGAAGCTGTGCGGAGATCTGTACGATCGGCTGCTGGAGCCCATGCGTCA
GGCGGCCTTGATGGCAGGGGCGACTCTTGGTGGGGAAGTGGCGCCGGATG
CGCTGGGAGGGCAACTGGTGGATGCCCTTGGGGACGGGGGGGAGAAAGCA
GCCATGGAGGTCTTGATGCGGGACCAGGAATTGGCAGCGGCGGACGCGGA
GGGGATGGAATCGGAGAAAGAAAAACTGGCGGCGTTAATGCGGGAACGCG
CCATGACCGGCCGCAAGGTGAGCAAAGCCCGGAGCATGTACAGTAAGAAT
TTAAACGCTGTACGGAAACGCAACCCGGGCCTGAAAATCCGTGAATTCCC
ACAAGGACGAAGTATTCAAGAGGTGGTGATGGTGGGCGGGGCGACCAGGA
TGCCATCGATCCGACGCCTGGTAGCAGCCGTCACTGGCATCACGCCGAGG
ACGACCGTCGACCCAGACGAAGCAGTCGCCCTGGGGGCGGGCATCCATGC
CGGTGTCTTGGACGGGATCATTGAAGACATGGACATGCTGACGCCGATGC
AGGCGGCGATCGCCAGAGGTCTTTTGGACTACGAGGCCCGGGCGGGACAA
GCGGGGCCACGCTCGCAGAAGCAACGGAAGGGGTTCTAGGCAGGGAGGAG
AGGCTGTGTTGATAACTAGATATATAAAGGGGATCCAACTGTCGAGGAAA
AGTAAATCAAAGCCGTCTTACTCCTACT
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protein sequence of rna8917

>rna8917-protein ID=rna8917-protein|Name=rna8917|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDG
DRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSH
LLPREARHWQVCPGLSKSGRVGGWTRRP
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mRNA from alignment at KK037250.1:476613..477498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8917 ID=rna8917|Name=rna8917|organism=Nannochloropsis gaditana|type=mRNA|length=886bp|location=Sequence derived from alignment at KK037250.1:476613..477498+ (Nannochloropsis gaditana)
AGCGCCGGCCGGACGCCTCACTGTCACACCCCTCTCGTCACGGTACTGAA
GGGGGCCAGGAGCTCGTGACAGCTTATCGCACCCATCGATTTTCGACAGC
GTCTGTCGAAAACTTAAAAAAGTCATGGTACGTGCACATATCCAGCATCT
GCTCCTTGCCTGCCACATTTTGTAATCTTTCAATTTCATCACGCCCGCTa
catccctccatctccgaaAGCTCCCCTTGTCGCTTCTAAAAACGGCGCAA
GGCCACCCCATGCTCGTGGAACTGAAGAATGGGGACACGTACAATGGCCG
ACTGGTTTCGTGCGACACTTGGATGAACATCACATTGAGGGATGTCATCT
GCACTTCCAGGgtgaggagagcgggagacgatgggagggagggggcaagg
aggagggagaagagaggcacAAGGGACGATAAGCTCTCGTGCGACTTTCT
CCCCTGATTTGACCCTCTCGCGccccatttcttttccttcctgctccatc
aCGTCAGGATGGAGACAGGTTCTGGAAGATTCCGGAGTGCTACGTCCGGG
GAAACAGCATCAAGTACCTGCGGGTGCCGGAGGAGGTGATCGACATGGTT
AacgaggaggacctggaACGGGAACGTACGTACAATaccttgtcttcccc
ctttgTCTCTCATCTTTTGCCCCGGGAAGCCCGTCACTGGCAAGTATGTC
CCGGGCTCTCGAAGAGCGGGCGTGTAGGAGGCTGGACTCGAAGGCCTTGA
GGACCGcgactccttccttcgcgcaTACCCGGACTGGGAGTGGCTTTAGC
ATGCTTTTGCACGTCCATCTTATTGTTCATTTGACATGCTATCCCCATCA
CTCTCACACAATTCGAACGCTTCGCACTGATCGTGg
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Coding sequence (CDS) from alignment at KK037250.1:476613..477498+

>rna8917 ID=rna8917|Name=rna8917|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at KK037250.1:476613..477498+ (Nannochloropsis gaditana)
ATGCTCCCCTTGTCGCTTCTAAAAACGGCGCAAGGCCACCCCATGCTCGT
GGAACTGAAGAATGGGGACACGTACAATGGCCGACTGGTTTCGTGCGACA
CTTGGATGAACATCACATTGAGGGATGTCATCTGCACTTCCAGGGATGGA
GACAGGTTCTGGAAGATTCCGGAGTGCTACGTCCGGGGAAACAGCATCAA
GTACCTGCGGGTGCCGGAGGAGGTGATCGACATGGTTAacgaggaggacc
tggaACGGGAACGTACGTACAATaccttgtcttccccctttgTCTCTCAT
CTTTTGCCCCGGGAAGCCCGTCACTGGCAAGTATGTCCCGGGCTCTCGAA
GAGCGGGCGTGTAGGAGGCTGGACTCGAAGGCCTTGAATGCTCCCCTTGT
CGCTTCTAAAAACGGCGCAAGGCCACCCCATGCTCGTGGAACTGAAGAAT
GGGGACACGTACAATGGCCGACTGGTTTCGTGCGACACTTGGATGAACAT
CACATTGAGGGATGTCATCTGCACTTCCAGGGATGGAGACAGGTTCTGGA
AGATTCCGGAGTGCTACGTCCGGGGAAACAGCATCAAGTACCTGCGGGTG
CCGGAGGAGGTGATCGACATGGTTAacgaggaggacctggaACGGGAACG
TACGTACAATaccttgtcttccccctttgTCTCTCATCTTTTGCCCCGGG
AAGCCCGTCACTGGCAAGTATGTCCCGGGCTCTCGAAGAGCGGGCGTGTA
GGAGGCTGGACTCGAAGGCCTTGAATGCTCCCCTTGTCGCTTCTAAAAAC
GGCGCAAGGCCACCCCATGCTCGTGGAACTGAAGAATGGGGACACGTACA
ATGGCCGACTGGTTTCGTGCGACACTTGGATGAACATCACATTGAGGGAT
GTCATCTGCACTTCCAGGGATGGAGACAGGTTCTGGAAGATTCCGGAGTG
CTACGTCCGGGGAAACAGCATCAAGTACCTGCGGGTGCCGGAGGAGGTGA
TCGACATGGTTAacgaggaggacctggaACGGGAACGTACGTACAATacc
ttgtcttccccctttgTCTCTCATCTTTTGCCCCGGGAAGCCCGTCACTG
GCAAGTATGTCCCGGGCTCTCGAAGAGCGGGCGTGTAGGAGGCTGGACTC
GAAGGCCTTGA
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Synonyms
Publications