EWM21793.1, cds8887 (CDS) Nannochloropsis gaditana

Overview
NameEWM21793.1
Unique Namecds8887
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:476737..476739 +
Alignment locationKK037250.1:476833..476973 +
Alignment locationKK037250.1:477120..477362 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21793.1
Productu6 snrna-associated sm-like protein lsm4
Orig transcript idgnl|cribi|Naga_100065g3.7384.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:476737..476739 +
KK037250.1supercontigKK037250.1:476833..476973 +
KK037250.1supercontigKK037250.1:477120..477362 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|585102129|gb|EWM21793.1| (u6 snrna-associated sm-like protein lsm4 [Nannochloropsis gaditana])

HSP 1 Score: 266.544 bits (680), Expect = 1.846e-90
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP 128
            MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP 128          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|675168979|ref|XP_008893374.1| (hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >gi|568106971|gb|ETN21601.1| hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >gi|570982945|gb|ETP42871.1| hypothetical protein F442_10208 [Phytophthora parasitica P10297])

HSP 1 Score: 163.696 bits (413), Expect = 4.478e-49
Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED  +
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|566022119|gb|ETI45030.1| (U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1569] >gi|567959427|gb|ETK84999.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|567988150|gb|ETL38431.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|568017369|gb|ETL91546.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|568047769|gb|ETM44841.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|570325676|gb|ETO73624.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1976] >gi|570949573|gb|ETP14830.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 163.696 bits (413), Expect = 4.527e-49
Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED  +
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|695433449|ref|XP_009531179.1| (hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae] >gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae])

HSP 1 Score: 160.229 bits (404), Expect = 5.919e-48
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 0
Query:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDL-ERERTYN 91
            LPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED  +R+R  N
Sbjct:    4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQAN 94          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|929377571|ref|XP_014099020.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Bactrocera oleae])

HSP 1 Score: 159.844 bits (403), Expect = 6.618e-48
Identity = 77/134 (57.46%), Postives = 95/134 (70.90%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVG------GWTRRP 128
            MLPL+LLKTAQ HPMLVELKNG+TYNG LVSCD+WMNI LRDVICTS+DGDRFW++PECYVRG++IKYLR+P+EVIDMV +E   + R  + ++   VS  +  +    QV        + G      G T RP
Sbjct:    1 MLPLTLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVIDMVKDEAQAKSRNRSEINKTRVSGAVQNQNMRGQVRSRFKNGHQNGAKNVLRGQTSRP 134          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|953488196|emb|CEG48213.1| (u6 snrna-associated sm-like protein lsm4 [Plasmopara halstedii])

HSP 1 Score: 159.458 bits (402), Expect = 1.120e-47
Identity = 69/86 (80.23%), Postives = 82/86 (95.35%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLL+TAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNE+DL +
Sbjct:    1 MLPLSLLQTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEDDLNK 86          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|763782865|gb|KJB49936.1| (hypothetical protein B456_008G146200 [Gossypium raimondii] >gi|763782868|gb|KJB49939.1| hypothetical protein B456_008G146200 [Gossypium raimondii])

HSP 1 Score: 153.295 bits (386), Expect = 3.662e-46
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE   R
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 86          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|920691666|gb|KOM34891.1| (hypothetical protein LR48_Vigan02g104100 [Vigna angularis])

HSP 1 Score: 153.295 bits (386), Expect = 4.317e-46
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE   R
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 86          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|922329429|ref|XP_003628456.2| (u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|922334764|ref|XP_013445372.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|657373784|gb|KEH19398.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|657373789|gb|AET02932.2| u6 snRNA-associated-like-Smprotein [Medicago truncatula])

HSP 1 Score: 155.221 bits (391), Expect = 4.414e-46
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
            MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE    +R
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEKSRTDR 88          
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|1141973363|gb|ONK55071.1| (uncharacterized protein A4U43_UnF7840 [Asparagus officinalis])

HSP 1 Score: 152.91 bits (385), Expect = 4.688e-46
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
            MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE   R
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEAKNR 86          
The following BLAST results are available for this feature:
BLAST of EWM21793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102129|gb|EWM21793.1|1.846e-90100.00u6 snrna-associated sm-like protein lsm4 [Nannochl... [more]
gi|675168979|ref|XP_008893374.1|4.478e-4981.40hypothetical protein PPTG_01744 [Phytophthora para... [more]
gi|566022119|gb|ETI45030.1|4.527e-4981.40U6 snRNA-associated Sm-like protein LSm4 [Phytopht... [more]
gi|695433449|ref|XP_009531179.1|5.919e-4879.12hypothetical protein PHYSODRAFT_347058 [Phytophtho... [more]
gi|929377571|ref|XP_014099020.1|6.618e-4857.46PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
gi|953488196|emb|CEG48213.1|1.120e-4780.23u6 snrna-associated sm-like protein lsm4 [Plasmopa... [more]
gi|763782865|gb|KJB49936.1|3.662e-4681.40hypothetical protein B456_008G146200 [Gossypium ra... [more]
gi|920691666|gb|KOM34891.1|4.317e-4681.40hypothetical protein LR48_Vigan02g104100 [Vigna an... [more]
gi|922329429|ref|XP_003628456.2|4.414e-4679.55u6 snRNA-associated-like-Smprotein [Medicago trunc... [more]
gi|1141973363|gb|ONK55071.1|4.688e-4681.40uncharacterized protein A4U43_UnF7840 [Asparagus o... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8917rna8917Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications