EWM21793.1, cds8887 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|585102129|gb|EWM21793.1| (u6 snrna-associated sm-like protein lsm4 [Nannochloropsis gaditana]) HSP 1 Score: 266.544 bits (680), Expect = 1.846e-90 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP 128
MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVGGWTRRP 128
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|675168979|ref|XP_008893374.1| (hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >gi|568106971|gb|ETN21601.1| hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >gi|570982945|gb|ETP42871.1| hypothetical protein F442_10208 [Phytophthora parasitica P10297]) HSP 1 Score: 163.696 bits (413), Expect = 4.478e-49 Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED +
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|566022119|gb|ETI45030.1| (U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1569] >gi|567959427|gb|ETK84999.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|567988150|gb|ETL38431.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|568017369|gb|ETL91546.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|568047769|gb|ETM44841.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >gi|570325676|gb|ETO73624.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1976] >gi|570949573|gb|ETP14830.1| U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 163.696 bits (413), Expect = 4.527e-49 Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED +
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|695433449|ref|XP_009531179.1| (hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae] >gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]) HSP 1 Score: 160.229 bits (404), Expect = 5.919e-48 Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 0
Query: 2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDL-ERERTYN 91
LPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED +R+R N
Sbjct: 4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQAN 94
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|929377571|ref|XP_014099020.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Bactrocera oleae]) HSP 1 Score: 159.844 bits (403), Expect = 6.618e-48 Identity = 77/134 (57.46%), Postives = 95/134 (70.90%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTYNTLSSPFVSHLLPREARHWQVCPGLSKSGRVG------GWTRRP 128
MLPL+LLKTAQ HPMLVELKNG+TYNG LVSCD+WMNI LRDVICTS+DGDRFW++PECYVRG++IKYLR+P+EVIDMV +E + R + ++ VS + + QV + G G T RP
Sbjct: 1 MLPLTLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVIDMVKDEAQAKSRNRSEINKTRVSGAVQNQNMRGQVRSRFKNGHQNGAKNVLRGQTSRP 134
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|953488196|emb|CEG48213.1| (u6 snrna-associated sm-like protein lsm4 [Plasmopara halstedii]) HSP 1 Score: 159.458 bits (402), Expect = 1.120e-47 Identity = 69/86 (80.23%), Postives = 82/86 (95.35%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLL+TAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNE+DL +
Sbjct: 1 MLPLSLLQTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEDDLNK 86
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|763782865|gb|KJB49936.1| (hypothetical protein B456_008G146200 [Gossypium raimondii] >gi|763782868|gb|KJB49939.1| hypothetical protein B456_008G146200 [Gossypium raimondii]) HSP 1 Score: 153.295 bits (386), Expect = 3.662e-46 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 86
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|920691666|gb|KOM34891.1| (hypothetical protein LR48_Vigan02g104100 [Vigna angularis]) HSP 1 Score: 153.295 bits (386), Expect = 4.317e-46 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 86
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|922329429|ref|XP_003628456.2| (u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|922334764|ref|XP_013445372.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|657373784|gb|KEH19398.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula] >gi|657373789|gb|AET02932.2| u6 snRNA-associated-like-Smprotein [Medicago truncatula]) HSP 1 Score: 155.221 bits (391), Expect = 4.414e-46 Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE +R
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEKSRTDR 88
BLAST of EWM21793.1 vs. NCBI_GenBank
Match: gi|1141973363|gb|ONK55071.1| (uncharacterized protein A4U43_UnF7840 [Asparagus officinalis]) HSP 1 Score: 152.91 bits (385), Expect = 4.688e-46 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEAKNR 86 The following BLAST results are available for this feature:
BLAST of EWM21793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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