rna8913, rna8913 (mRNA) Nannochloropsis gaditana

Overview
Namerna8913
Unique Namerna8913
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1070
Alignment locationKK037250.1:464190..465381 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100065g7.7394.mrna
Orig protein idgnl|cribi|Naga_100065g7.7394
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:464190..465381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100065g7gene8642Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8913rna8913-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21803.1cds8883Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8913 ID=rna8913|Name=rna8913|organism=Nannochloropsis gaditana|type=mRNA|length=1070bp
CGGTGAAGGGTTGCGAAGCTAGTTCGTGGGGTGTTTTCTGCGGCGCACTC
TCCCCTTTTTGATCACCTCAGCTTCCAAATCGTCATAATTTCGGACCCTA
ATTATACACCCCGACACCTCCATGTCTCCTACCAAGCGTCCCCCGCACGG
CGGAAAAGACGCAAGGCACGGCAGGCAACGACAGTGCTTCAGTCACTTGT
GTGCTGTAGTCTCGGCAATTCTTTGTGTCTGAGGCCTTGCATTTTTGGGT
CAATGCCTACTTCTCATGCTCTTCGATTCTCCAAGCCTTCTTAATCATAC
ATTTCTGTTTCCTCCATATCATCACACGTTAACCTCCAAATACGCACAGG
CCTTCATCTACATTTTTTTCATCTCATGTGCACCTGAATCTTTTCCAACC
AAAAATGCCGTCTATAAATAATTCGAAAGCCTCAAAAGCAGACGACGACC
CTGCCCTCGTTGAACTTCGCGACGCCGAAGCCCGCGTTGAGCACGTGTTG
ACAAAGAAACCTGTGAATCTGGACGCCGCCAAATTAGTGCCCTCATCAAT
ACGCGTCAAAGACCTTCGACGCTGGGATGGCTGCGACATCGTGCGAAAAG
GCGCGAAGAAAACACGCTACGTCTTCCTCCTTCCTGCAATCATGACCATA
ACGCAAGCGGGCGGTAAACTGGGTACTATCGCACTAATGGACACGGAAAC
GCCTGTCCTCTATTTGGATTTTCCACAAGGCCGGATGAAATGTCAGGGAA
GGATCGTGCGCCCGGAGGTCCGTTTGCTTCCTCTCGCTTTTGAGGGCAAA
CGCAGCGTGACGTGCAAGGACCTTGTCAACACCCTGGTTGTCTTCTCCAA
GGTCTGGTGGATCGGCACCGAGAAGGAAAATCCGGAGGAGAAGCCCTGGC
CGTTTCCAAAGGAGATGAATTTCCAAGTGGAGGGGCCGCAGGCGGGAGAG
GCGCTGGGAGGGACAAGGAAGGAAGGAGGCGGCCGGGAGAGGGAGGGGAA
GGAGGCAGTTGGGGAGGTTGAGGGGCCCGGGGGGGGGGGCGACCGAAGAG
GGCGCCAAAGCCGGCTATGA
back to top

protein sequence of rna8913

>rna8913-protein ID=rna8913-protein|Name=rna8913|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MKMVRLLAVLVVAGTACVSAFMPVLPATRVLQQQARPLVAPLEMAKHPQF
KIIKKKMHKRPKKSNASDRNRGGHSTHPVDQRDMSGPGWLFPDQEGWVPY
DESVHGPLDEEMKELTEGLDPIWVRIVDPTTGEPKLEDAARRCGGGRGKD
HPLEIFLCAHVHVDGPGYDTREGAGTQGDLVSAGDGVEGTDETQKE
back to top

mRNA from alignment at KK037250.1:464190..465381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8913 ID=rna8913|Name=rna8913|organism=Nannochloropsis gaditana|type=mRNA|length=1192bp|location=Sequence derived from alignment at KK037250.1:464190..465381+ (Nannochloropsis gaditana)
ATGAAAATGGTGCGACTACTGGCAGTGCTGGTCGTTGCGGGCACGGCGTG
CGTCTCTGCCTTTATGCCCGTACTACCAGCGACACGCGTGCTGCAACAGC
AAGGTAAGAACGGGGGTCGTTGTCACCAAGCAACTTAAAAAAGAAATGTA
GACGAGTTCCCAGGCAGATCCTGTACGGAGAAAGAATGCGTGCTTATTTG
CGAATTTAGGAAGGCTTAAAACAAAGCATTTAAgggtggaagtggaggat
aCAGACACGACATCGATGCGGTTCCTGGgtagggagaggagggaggcccg
gAAGGACGAAGATTGCGGTGGACGACATGAATGAGCACGCCGTGACACCC
GACACGCTTGCGCCGCATGTATACATATGCAATCCTTCTCACTGTGTTTC
CTCCCATGGCACCGGGAACCGGCACCCTCCACAGCGCGACCGCTAGTGGC
TCCGTTGGAGATGGCCAAGCACCCCCAGTTCAAGATTATCAAGAAAAAGA
TGCACAAGCGCCCGAAAAAGGTACTGCCTGGCGCTCTAGCGTCGCTCTTG
GCCTTCATTTatttccctgcttcccttaTCCTTTGTTCATTTCTCTCATC
CGCCCGgttcccttttcctgtctgcttttccctcaccccctccttcctcc
ctgctcgtcTTGGCGCCGCGTTCCTTGCCTCAACCCCGCAGAGCAACGCA
TCAGATCGCAATCGCGGAGGGCATTCGACCCACCCCGTGGACCAACGGGA
CATGAGCGGGCCGGGCTGGCTCTTCCCCGACCAGGAGGGGTGGGTGCCGT
ACGACGAGAGCGTGCACGGCcccttggacgaggagatgaaggagctgACG
GAGGGCTTGGACCCGATTTGGGTCCGAATTGTGGACCCGACCACCGGGGA
GCCCAAGTTGGAGGACgcgtgaggaggggggcgggtgcgatggggaggga
aggggtatTTATACGACGTGCTGGTGTGATATTCGACCACACacggaggg
tgaggggaggaaggaagggcaaggcgttgcgggggaggacggggaaagga
TCATCCGCTGGAGATATTTCTGTGTGCGCACGTGCACGTGGATGGTCCTG
GGTATGAcaccagggagggggcaggcaCACAGGGCGACCTTGTGAGTGCG
GGAGATGGAGTTGAAGGCACTGACGAAACGCAGAAAGAATAA
back to top

Coding sequence (CDS) from alignment at KK037250.1:464190..465381+

>rna8913 ID=rna8913|Name=rna8913|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at KK037250.1:464190..465381+ (Nannochloropsis gaditana)
ATGAAAATGGTGCGACTACTGGCAGTGCTGGTCGTTGCGGGCACGGCGTG
CGTCTCTGCCTTTATGCCCGTACTACCAGCGACACGCGTGCTGCAACAGC
AAGCGCGACCGCTAGTGGCTCCGTTGGAGATGGCCAAGCACCCCCAGTTC
AAGATTATCAAGAAAAAGATGCACAAGCGCCCGAAAAAGAGCAACGCATC
AGATCGCAATCGCGGAGGGCATTCGACCCACCCCGTGGACCAACGGGACA
TGAGCGGGCCGGGCTGGCTCTTCCCCGACCAGGAGGGGTGGGTGCCGTAC
GACGAGAGCGTGCACGGCcccttggacgaggagatgaaggagctgACGGA
GGGCTTGGACCCGATTTGGGTCCGAATTGTGGACCCGACCACCGGGGAGC
CCAAGTTGGAGGACgcggcaaggcgttgcgggggaggacggggaaaggaT
CATCCGCTGGAGATATTTCTGTGTGCGCACGTGCACGTGGATGGTCCTGG
GTATGAcaccagggagggggcaggcaCACAGGGCGACCTTGTGAGTGCGG
GAGATGGAGTTGAAGGCACTGACGAAACGCAGAAAGAATAAATGAAAATG
GTGCGACTACTGGCAGTGCTGGTCGTTGCGGGCACGGCGTGCGTCTCTGC
CTTTATGCCCGTACTACCAGCGACACGCGTGCTGCAACAGCAAGCGCGAC
CGCTAGTGGCTCCGTTGGAGATGGCCAAGCACCCCCAGTTCAAGATTATC
AAGAAAAAGATGCACAAGCGCCCGAAAAAGAGCAACGCATCAGATCGCAA
TCGCGGAGGGCATTCGACCCACCCCGTGGACCAACGGGACATGAGCGGGC
CGGGCTGGCTCTTCCCCGACCAGGAGGGGTGGGTGCCGTACGACGAGAGC
GTGCACGGCcccttggacgaggagatgaaggagctgACGGAGGGCTTGGA
CCCGATTTGGGTCCGAATTGTGGACCCGACCACCGGGGAGCCCAAGTTGG
AGGACgcggcaaggcgttgcgggggaggacggggaaaggaTCATCCGCTG
GAGATATTTCTGTGTGCGCACGTGCACGTGGATGGTCCTGGGTATGAcac
cagggagggggcaggcaCACAGGGCGACCTTGTGAGTGCGGGAGATGGAG
TTGAAGGCACTGACGAAACGCAGAAAGAATAAATGAAAATGGTGCGACTA
CTGGCAGTGCTGGTCGTTGCGGGCACGGCGTGCGTCTCTGCCTTTATGCC
CGTACTACCAGCGACACGCGTGCTGCAACAGCAAGCGCGACCGCTAGTGG
CTCCGTTGGAGATGGCCAAGCACCCCCAGTTCAAGATTATCAAGAAAAAG
ATGCACAAGCGCCCGAAAAAGAGCAACGCATCAGATCGCAATCGCGGAGG
GCATTCGACCCACCCCGTGGACCAACGGGACATGAGCGGGCCGGGCTGGC
TCTTCCCCGACCAGGAGGGGTGGGTGCCGTACGACGAGAGCGTGCACGGC
cccttggacgaggagatgaaggagctgACGGAGGGCTTGGACCCGATTTG
GGTCCGAATTGTGGACCCGACCACCGGGGAGCCCAAGTTGGAGGACgcgg
caaggcgttgcgggggaggacggggaaaggaTCATCCGCTGGAGATATTT
CTGTGTGCGCACGTGCACGTGGATGGTCCTGGGTATGAcaccagggaggg
ggcaggcaCACAGGGCGACCTTGTGAGTGCGGGAGATGGAGTTGAAGGCA
CTGACGAAACGCAGAAAGAATAAATGAAAATGGTGCGACTACTGGCAGTG
CTGGTCGTTGCGGGCACGGCGTGCGTCTCTGCCTTTATGCCCGTACTACC
AGCGACACGCGTGCTGCAACAGCAAGCGCGACCGCTAGTGGCTCCGTTGG
AGATGGCCAAGCACCCCCAGTTCAAGATTATCAAGAAAAAGATGCACAAG
CGCCCGAAAAAGAGCAACGCATCAGATCGCAATCGCGGAGGGCATTCGAC
CCACCCCGTGGACCAACGGGACATGAGCGGGCCGGGCTGGCTCTTCCCCG
ACCAGGAGGGGTGGGTGCCGTACGACGAGAGCGTGCACGGCcccttggac
gaggagatgaaggagctgACGGAGGGCTTGGACCCGATTTGGGTCCGAAT
TGTGGACCCGACCACCGGGGAGCCCAAGTTGGAGGACgcggcaaggcgtt
gcgggggaggacggggaaaggaTCATCCGCTGGAGATATTTCTGTGTGCG
CACGTGCACGTGGATGGTCCTGGGTATGAcaccagggagggggcaggcaC
ACAGGGCGACCTTGTGAGTGCGGGAGATGGAGTTGAAGGCACTGACGAAA
CGCAGAAAGAATAA
back to top
Synonyms
Publications