rna8912, rna8912 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8912
Unique Name	rna8912
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3951
Alignment location	KK037250.1:462527..463596 -

Link to JBrowse

Properties


Property Name	Value
Product	dna-binding protein rhl1
Orig transcript id	gnl\|cribi\|Naga_100065g8.7375.mrna
Orig protein id	gnl\|cribi\|Naga_100065g8.7375
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:462527..463596 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g8	gene8641	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21784.1	cds8882	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8912	rna8912-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:462527..463596-
coding sequence from alignment at KK037250.1:462527..463596-

mRNA sequence

>rna8912 ID=rna8912|Name=rna8912|organism=Nannochloropsis gaditana|type=mRNA|length=3951bp
AGAGCTTACTTCTGTCCCGTGCCTACGTGCCTATGCAACCTCACCACAGT
TAATCTCGTCTGCCAAGTCGCTTGTCTTGTCTTGCTGCTATCGGAATACC
AAATATTGAAGGCATGTCCGCTTCCCCCGAGCAGATGTTTGCCCCTTTTG
AGGCCAAAATGCGGAAAGAGCATCTGAGTGACGCGGCCGTTGCCTCCTTC
AAAAATTCTTACATGGCCCTGGTGTCGGGCGCCTCAGGAGTCATTGCCGA
AAGCGATATCAAACCCGCCGAGGGCCTACCCCATCTGGAGAAAGATCTAA
AGCCCAAGATCAAGGTGAACCCGGAGCTTCTCAAGGAAACCGTGGTCTTG
AAACTGAACGGCGGGCTGGGCACTGGCATGGGCTTGGACAAGGCGAAATC
CCTGCTGCCCGTGAAGGCGAAGGATACCTTCTTGGACCTGACCGCCAAGC
AAGTCATGGCCTTCCGGCATAAATTCAAGAGCCACGTCCGCTTTATCCTC
ATGAACTCCTTCAGCACCTCCGAGGACACGCTCAGCTACCTGAGCAAGTA
CCCGGCGTTGGTCGCCGACCCCAACCTGGAGCTCCTGCAAAATAAAGTCC
CCAAGGTGGATGCGGCCAGCCTGGAGCCAGTGGCATGGCCCACGAATCCC
GCGCAAGAGTGGTGTCCTCCAGGCCACGGCGATCTCTACGCGGCCTTGGA
CGGATCGGGGACCTTGGACCGTCTCCTGGCGGACGGGGTCAAGTACATGT
TCGTGTCCAATTCGGACAACCTGGGCGCGACCTTGGATCTGTCCCTGCTC
ACGTATTTCGCCGAGTCGGGCTCCTCCTTCATGATGGAGTGCGCGGAGAG
GACAGAGGCGGACAAGAAGGGGGGGCACCTGGCGGTACGGTCCAGCGACG
GCCAGCTGATCTTGCGGGAATCTGCCCAGTGTGCCAAGGAAGACGAACCC
GCCTTCCAAGATGTCTCGCGGCACAAGTACTTCAACACCAACAACCTGTG
GGTGCGCCTGGACAAGCTCAAGGAGGCCACCATCGCCGCCGGGGGTCTCA
TCCCCCTCCCCATGATCAAGAACGGGAAGACCGTGGACCCCAAGGACGGG
AAAAGCCCCAAAGTCTGGCAGCTGGAGACGGCGATGGGCGCGGCCATTGA
ATGCTTTCCCGGCTCCTCCGCCGTGGTCGTGCCCCGCACCCGCTTTGTCC
CCGTCAAGAAATGCAACGACCTCCTCCTCCTCCGCTCCGACACCTACGTG
CTCACCGCTGACGGAACTCCGGCCCTGGACCCGTCTCGGCGCGGCGCTGC
CCCTCTCATCAATTTGGACGATAAAGCCTACAAGCTGGTGCAGCAGCTCG
AGGCGGCCACTCAGGGGGGAACGCCTTCTCTGGTGGGCGCGGACCGCTTG
ACCATCCAAGGGCAAGTCTGGCTCTCCTCGGGAGTCGTCTTTCAGGGCAC
CACCACGGTCACGAACAAGGGCGACGAGCCCAAAGTGCTGCCGAAGGGGG
TTTACAAGGATGCGAGCGTGGACCTGACGGCGGCGCCCGGCCTCGGTGCC
CTCCGGCCTACGATTGTGGCCACGGCTCCCATCCCCGGGCAAAAGCCTGG
TACCTCTGGGCTTAGGAAGAAGGTGGTGGAGTTCCAAAGCCCCCATTACC
TGAACAATTTCGTGCAGGCCGTATTTAATGCCTTGGTGGACTTTGGGACG
GACGTGACCCTGGGGGGTAGTCTAGTTGTGGGCGGGGACGGCCGCTACTT
TAACCCCGAGGCCATCCAAATCATTACCAAGATGGCGGTGGCCAACGGAG
TCAAACGGATCTTGATCGCCAAAGACGGCCTTCTTTCGACCCCAGCCGCC
TCGGCGGTCATCCGTGAGCGGGGCCCCGCCTGGCAAAAGGCTTTCGGCGC
GTTCATCCTCTCTGCTTCCCACAACCCGGGCGGACCCTCGGAAGACTTTG
GGATCAAGTACAACATCGAAAATGGAGGACCGGCTCCCGAGAAGGTGACC
AACGCCATGTACTCGTATACCACCACCCTGACCTCCTACAAAATCGCGCC
GGATTTCCCAGATGTGGACACAAGTAAGCTGGGCAGCACCCGGGTCGTCT
CGGCGGACGGGAGCCGTGGTGTGGTGGTGACCGTGTTCGACGGCCTGGAG
GAACACGTAAAGCTTCTCAAGACCATCTTCGATTTCGAGGCGATCCAGAC
GCTTATGCAACGGCCGGATTTCTCCTTTGTCTACGACTCCATGTCCGGAG
TCCAGGGGCCCTATGCCCACAAGGTGTTCGTGGAGGAGTTGGGCGCGGCG
ACCACCTGTCTCTTGAACGCGGAGCCCAAGGATGATTTCGGGGGAGGGCA
TGCGGACCCGAATCTGACGTACGCGCACGATCTCATCCATGTGATGGGGG
TGGACAGCAAGGGTAACGCGGTGGCTGCGAAGGAGGGGGTCTTGATCCCT
TCCTTCGGCGCGGCAGCGGATGGAGACGCGGACAGGAATATGATTTTGGG
CCGACAGTTCTTTGTGACGCCTTCGGATTCCTTGGCGATCATCGTGGCGC
ACGCAGACGTGATCCCTTTCTTCCGGGACCAGGGAGGCCTGCGTGGGGTC
GCGCGGTCCATGCCCACGAGCGGTGCGGTGGACCTGGTGGCCAAGCGGAT
GAACATGAGCCTGTTCGAGACCCCGACGGGCTGGAAATTCTTTGGAAACC
TGATGGACAGCCGGGAGATGGGCGGTGCGAACTACACGCCCTTCATTTGC
GGGGAGGAGAGCTTTGGCACGGGCTCGGATCACGTCCGGGAGAAGGACGG
CATGTGGGCTGTCCTGGCCTGGCTGTCCATTCTGGCCCATTACAACCAAG
ACCCGAAGAAGGCCCTGGTCTCGGTGGAAAGCATCGTGCGGGAGCATTGG
AGGACGTATGGGAGGAACTACTACGTGCGGTACGACTACGAAGGCGTGGA
CAAGAGCCGCGCCGAGGCCATGGTCGGGCACATGACCTCCTCCTTTGCCG
CCGTTACCGGGCAATGCCTCGCGGGCGGTTACACGGTGGCGGTTGCCGAC
GAGTTCCAGTACGTGGACCCCGTGGATGGCTCGGTCTCCTCCCACCAGGG
GGTCCGGTACCTGTTCACGGACGGTTCGCGCGTCATTTTCCGCCTCTCGG
GCACGGCAGGGTCCGGTGCCACGGTCCGCATGTACCTGGAGAAGTACGAG
GCCGACCGGAGCAAGCTGGGATCGCACCCTCTGGAGGCCCTGGGTGTCTT
GGTGCAGGTGGCGTTGGAGCTCTCTGATCTCGAAAAGTTCACGGGGCGCA
AGGAGCCGACGGTGATCACGTGAGGGGAGTGAGGGGGTGAGGGAGGGAGG
TAGGGATGACGGTGGACGAATTCAAAGAGGGGGGGGTTCAGAGCAGTCAG
GCGATAATGTTTGGGGGTGTATCATCTTTATTCATGCATGCAGGCGTCCT
TATGATGCATGCGTCTCGAAAGGAGGGGGAAGACGGGAGAGTAGAGGCGA
GGCAGGGGCAGGGAGGGCATCGGACCGCACCCTGTAGGGAGGGATGGAGG
CCGCAGTGGTGCCGTGCTTCGGGGCAAGGGAAGGTCGGGGAGATAGTCGG
GGAGAGGAGAAGGGGTTGCGTCGGGGGAGCGAGGGAGAGAGGGCTCTGGA
CGACGGGAGGGCCGGGGTGCATCTCTTTTGTATGTGAAGATGAGAAGGGG
GAAAAAGACGAAGTAATCACATGGGAGAGAAACGGGCGCGCATCTGAGGA
AGGACGTTGCCTTTCCAAGGAAATCACGGCAGTGGGCTCCAGAAGGAATC
CAATGTTCTTTCTTTTATCCACGTGCTCCCTCGTCGGTCCCGCCCTCTAC
CTCCCTTGGCTCGCACAGTGTATCCTCTCAGAGGAACCTCCCCTACACGC
TAGGTACACACACGGCCTCGTCCACACCCCACAGACACACAGATATTTAC
A

protein sequence of rna8912

>rna8912-protein ID=rna8912-protein|Name=rna8912|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIR
VKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETP
VLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKV
WWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKE
AVGEVEGPGGGGDRRGRQSRL

mRNA from alignment at KK037250.1:462527..463596-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8912 ID=rna8912|Name=rna8912|organism=Nannochloropsis gaditana|type=mRNA|length=1070bp|location=Sequence derived from alignment at KK037250.1:462527..463596- (Nannochloropsis gaditana)
CGGTGAAGGGTTGCGAAGCTAGTTCGTGGGGTGTTTTCTGCGGCGCACTC
TCCCCTTTTTGATCACCTCAGCTTCCAAATCGTCATAATTTCGGACCCTA
ATTATACACCCCGACACCTCCATGTCTCCTACCAAGCGTCCCCCGCACGG
CGGAAAAGACGCAAGGCACGGCAGGCAACGACAGTGCTTCAGTCACTTGT
GTGCTGTAGTCTCGGCAATTCTTTGTGTCTGAGGCCTTGCATTTTTGGGT
CAATGCCTACTTCTCATGCTCTTCGATTCTCCAAGCCTTCTTAATCATAC
ATTTCTGTTTCCTCCATATCATCACACGTTAACCTCCAAATACGCACAGG
CCTTCATCTACATTTTTTTCATCTCATGTGCACCTGAATCTTTTCCAACC
AAAAATGCCGTCTATAAATAATTCGAAAGCCTCAAAAGCAGACGACGACC
CTGCCCTCGTTGAACTTCGCGACGCCGAAGCCCGCGTTGAGCACGTGTTG
ACAAAGAAACCTGTGAATCTGGACGCCGCCAAATTAGTGCCCTCATCAAT
ACGCGTCAAAGACCTTCGACGCTGGGATGGCTGCGACATCGTGCGAAAAG
GCGCGAAGAAAACACGCTACGTCTTCCTCCTTCCTGCAATCATGACCATA
ACGCAAGCGGGCGGTAAACTGGGTACTATCGCACTAATGGACACGGAAAC
GCCTGTCCTCTATTTGGATTTTCCACAAGGCCGGATGAAATGTCAGGGAA
GGATCGTGCGCCCGGAGGTCCGTTTGCTTCCTCTCGCTTTTGAGGGCAAA
CGCAGCGTGACGTGCAAGGACCTTGTCAACACCCTGGTTGTCTTCTCCAA
GGTCTGGTGGATCGGCACCGAGAAGGAAAATCCGGAGGAGAAGCCCTGGC
CGTTTCCAAAGGAGATGAATTTCCAAGTGGAGGGGCCGCAGGCGGGAGAG
GCGCTGGGAGGGACAAGGAAGGAAGGAGGCGGCCGGGAGAGGGAGGGGAA
GGAGGCAGTTGGGGAGGTTGAGGGGCCCGGGGGGGGGGGCGACCGAAGAG
GGCGCCAAAGCCGGCTATGA

Coding sequence (CDS) from alignment at KK037250.1:462527..463596-

>rna8912 ID=rna8912|Name=rna8912|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at KK037250.1:462527..463596- (Nannochloropsis gaditana)
ATGCCGTCTATAAATAATTCGAAAGCCTCAAAAGCAGACGACGACCCTGC
CCTCGTTGAACTTCGCGACGCCGAAGCCCGCGTTGAGCACGTGTTGACAA
AGAAACCTGTGAATCTGGACGCCGCCAAATTAGTGCCCTCATCAATACGC
GTCAAAGACCTTCGACGCTGGGATGGCTGCGACATCGTGCGAAAAGGCGC
GAAGAAAACACGCTACGTCTTCCTCCTTCCTGCAATCATGACCATAACGC
AAGCGGGCGGTAAACTGGGTACTATCGCACTAATGGACACGGAAACGCCT
GTCCTCTATTTGGATTTTCCACAAGGCCGGATGAAATGTCAGGGAAGGAT
CGTGCGCCCGGAGGTCCGTTTGCTTCCTCTCGCTTTTGAGGGCAAACGCA
GCGTGACGTGCAAGGACCTTGTCAACACCCTGGTTGTCTTCTCCAAGGTC
TGGTGGATCGGCACCGAGAAGGAAAATCCGGAGGAGAAGCCCTGGCCGTT
TCCAAAGGAGATGAATTTCCAAGTGGAGGGGCCGCAGGCGGGAGAGGCGC
TGGGAGGGACAAGGAAGGAAGGAGGCGGCCGGGAGAGGGAGGGGAAGGAG
GCAGTTGGGGAGGTTGAGGGGCCCGGGGGGGGGGGCGACCGAAGAGGGCG
CCAAAGCCGGCTATGA

Synonyms

Publications