EWM21784.1, cds8882 (CDS) Nannochloropsis gaditana

Overview
NameEWM21784.1
Unique Namecds8882
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:462527..463192 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21784.1
Productdna-binding protein rhl1
Orig transcript idgnl|cribi|Naga_100065g8.7375.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:462527..463192 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|585102120|gb|EWM21784.1| (dna-binding protein rhl1 [Nannochloropsis gaditana])

HSP 1 Score: 447.203 bits (1149), Expect = 6.268e-159
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL 221
            MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL
Sbjct:    1 MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL 221          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|302774667|ref|XP_002970750.1| (hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii] >gi|300161461|gb|EFJ28076.1| hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii])

HSP 1 Score: 127.102 bits (318), Expect = 5.399e-32
Identity = 61/129 (47.29%), Postives = 91/129 (70.54%), Query Frame = 0
Query:   44 LVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAF-EGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEM 171
            L+PS    K+L + DG DIV+KG +K++++F  P ++    AGGK G +A +DT+ P+LY+DFP+GR+K  G IV P+ + L L   +G +SV C D++ +LVVFS+ WWIGT++ENPEEK    PK++
Sbjct:   42 LLPS----KELLKCDGKDIVKKGTRKSKFLFSFPGLVAPV-AGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583330|ref|XP_009778067.1| (PREDICTED: DNA-binding protein RHL1 isoform X6 [Nicotiana sylvestris])

HSP 1 Score: 128.642 bits (322), Expect = 6.794e-32
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583320|ref|XP_009778064.1| (PREDICTED: DNA-binding protein RHL1 isoform X3 [Nicotiana sylvestris] >gi|1025315797|ref|XP_016503058.1| PREDICTED: DNA-binding protein RHL1-like isoform X3 [Nicotiana tabacum])

HSP 1 Score: 128.642 bits (322), Expect = 6.835e-32
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583323|ref|XP_009778065.1| (PREDICTED: DNA-binding protein RHL1 isoform X4 [Nicotiana sylvestris])

HSP 1 Score: 128.642 bits (322), Expect = 7.154e-32
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583327|ref|XP_009778066.1| (PREDICTED: DNA-binding protein RHL1 isoform X5 [Nicotiana sylvestris] >gi|1025315801|ref|XP_016503059.1| PREDICTED: DNA-binding protein RHL1-like isoform X4 [Nicotiana tabacum])

HSP 1 Score: 128.642 bits (322), Expect = 7.575e-32
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|1102148443|gb|OIT04733.1| (dna-binding protein rhl1 [Nicotiana attenuata])

HSP 1 Score: 128.642 bits (322), Expect = 7.789e-32
Identity = 71/178 (39.89%), Postives = 99/178 (55.62%), Query Frame = 0
Query:   30 HVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
             +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   33 QMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 198          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583312|ref|XP_009778062.1| (PREDICTED: DNA-binding protein RHL1 isoform X1 [Nicotiana sylvestris] >gi|1025315789|ref|XP_016503055.1| PREDICTED: DNA-binding protein RHL1-like isoform X1 [Nicotiana tabacum])

HSP 1 Score: 128.642 bits (322), Expect = 9.543e-32
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|747051950|ref|XP_011072071.1| (DNA-binding protein RHL1 isoform X1 [Sesamum indicum] >gi|1173788138|ref|XP_020548717.1| DNA-binding protein RHL1 isoform X2 [Sesamum indicum])

HSP 1 Score: 127.872 bits (320), Expect = 1.084e-31
Identity = 66/150 (44.00%), Postives = 94/150 (62.67%), Query Frame = 0
Query:   30 HVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNF--QVE 176
            ++L++ P  L  +  +P S   K + +  G DI+RK  +K RY+F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV P+ R L L F  G ++VTC D  + ++VFS  WWIGT+ ENPEE    FPKE+N   QVE
Sbjct:   30 NILSQTPPKLGPSPSLPPS---KTVIKHHGKDILRKSQRKNRYLFSFPGLLGPI-SGGKIGDLKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLTLQFSRGGKNVTCDDYFDNMIVFSDAWWIGTKDENPEESRLQFPKELNLEKQVE 175          
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583316|ref|XP_009778063.1| (PREDICTED: DNA-binding protein RHL1 isoform X2 [Nicotiana sylvestris] >gi|1025315793|ref|XP_016503056.1| PREDICTED: DNA-binding protein RHL1-like isoform X2 [Nicotiana tabacum])

HSP 1 Score: 128.257 bits (321), Expect = 1.143e-31
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query:   15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
            +P +VE +  +  A  + +L++ P  +  + L PS   +K      G DI+RK  +K R++F  P ++    +GGK+G +  + T+ P+LYLDFPQG+MK  G IV PE R L L F  G ++V C+D  + ++VFS  WWIG + ENPEE    FPKE+N Q       E L    K G G     K + GE E
Sbjct:   18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200          
The following BLAST results are available for this feature:
BLAST of EWM21784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102120|gb|EWM21784.1|6.268e-159100.00dna-binding protein rhl1 [Nannochloropsis gaditana... [more]
gi|302774667|ref|XP_002970750.1|5.399e-3247.29hypothetical protein SELMODRAFT_411583 [Selaginell... [more]
gi|698583330|ref|XP_009778067.1|6.794e-3238.46PREDICTED: DNA-binding protein RHL1 isoform X6 [Ni... [more]
gi|698583320|ref|XP_009778064.1|6.835e-3238.46PREDICTED: DNA-binding protein RHL1 isoform X3 [Ni... [more]
gi|698583323|ref|XP_009778065.1|7.154e-3238.46PREDICTED: DNA-binding protein RHL1 isoform X4 [Ni... [more]
gi|698583327|ref|XP_009778066.1|7.575e-3238.46PREDICTED: DNA-binding protein RHL1 isoform X5 [Ni... [more]
gi|1102148443|gb|OIT04733.1|7.789e-3239.89dna-binding protein rhl1 [Nicotiana attenuata][more]
gi|698583312|ref|XP_009778062.1|9.543e-3238.46PREDICTED: DNA-binding protein RHL1 isoform X1 [Ni... [more]
gi|747051950|ref|XP_011072071.1|1.084e-3144.00DNA-binding protein RHL1 isoform X1 [Sesamum indic... [more]
gi|698583316|ref|XP_009778063.1|1.143e-3138.46PREDICTED: DNA-binding protein RHL1 isoform X2 [Ni... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8912rna8912Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications