EWM21784.1, cds8882 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|585102120|gb|EWM21784.1| (dna-binding protein rhl1 [Nannochloropsis gaditana]) HSP 1 Score: 447.203 bits (1149), Expect = 6.268e-159 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL 221
MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL
Sbjct: 1 MPSINNSKASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVEGPGGGGDRRGRQSRL 221
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|302774667|ref|XP_002970750.1| (hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii] >gi|300161461|gb|EFJ28076.1| hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii]) HSP 1 Score: 127.102 bits (318), Expect = 5.399e-32 Identity = 61/129 (47.29%), Postives = 91/129 (70.54%), Query Frame = 0
Query: 44 LVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAF-EGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEM 171
L+PS K+L + DG DIV+KG +K++++F P ++ AGGK G +A +DT+ P+LY+DFP+GR+K G IV P+ + L L +G +SV C D++ +LVVFS+ WWIGT++ENPEEK PK++
Sbjct: 42 LLPS----KELLKCDGKDIVKKGTRKSKFLFSFPGLVAPV-AGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583330|ref|XP_009778067.1| (PREDICTED: DNA-binding protein RHL1 isoform X6 [Nicotiana sylvestris]) HSP 1 Score: 128.642 bits (322), Expect = 6.794e-32 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583320|ref|XP_009778064.1| (PREDICTED: DNA-binding protein RHL1 isoform X3 [Nicotiana sylvestris] >gi|1025315797|ref|XP_016503058.1| PREDICTED: DNA-binding protein RHL1-like isoform X3 [Nicotiana tabacum]) HSP 1 Score: 128.642 bits (322), Expect = 6.835e-32 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583323|ref|XP_009778065.1| (PREDICTED: DNA-binding protein RHL1 isoform X4 [Nicotiana sylvestris]) HSP 1 Score: 128.642 bits (322), Expect = 7.154e-32 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583327|ref|XP_009778066.1| (PREDICTED: DNA-binding protein RHL1 isoform X5 [Nicotiana sylvestris] >gi|1025315801|ref|XP_016503059.1| PREDICTED: DNA-binding protein RHL1-like isoform X4 [Nicotiana tabacum]) HSP 1 Score: 128.642 bits (322), Expect = 7.575e-32 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|1102148443|gb|OIT04733.1| (dna-binding protein rhl1 [Nicotiana attenuata]) HSP 1 Score: 128.642 bits (322), Expect = 7.789e-32 Identity = 71/178 (39.89%), Postives = 99/178 (55.62%), Query Frame = 0
Query: 30 HVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 33 QMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 198
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583312|ref|XP_009778062.1| (PREDICTED: DNA-binding protein RHL1 isoform X1 [Nicotiana sylvestris] >gi|1025315789|ref|XP_016503055.1| PREDICTED: DNA-binding protein RHL1-like isoform X1 [Nicotiana tabacum]) HSP 1 Score: 128.642 bits (322), Expect = 9.543e-32 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|747051950|ref|XP_011072071.1| (DNA-binding protein RHL1 isoform X1 [Sesamum indicum] >gi|1173788138|ref|XP_020548717.1| DNA-binding protein RHL1 isoform X2 [Sesamum indicum]) HSP 1 Score: 127.872 bits (320), Expect = 1.084e-31 Identity = 66/150 (44.00%), Postives = 94/150 (62.67%), Query Frame = 0
Query: 30 HVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNF--QVE 176
++L++ P L + +P S K + + G DI+RK +K RY+F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV P+ R L L F G ++VTC D + ++VFS WWIGT+ ENPEE FPKE+N QVE
Sbjct: 30 NILSQTPPKLGPSPSLPPS---KTVIKHHGKDILRKSQRKNRYLFSFPGLLGPI-SGGKIGDLKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLTLQFSRGGKNVTCDDYFDNMIVFSDAWWIGTKDENPEESRLQFPKELNLEKQVE 175
BLAST of EWM21784.1 vs. NCBI_GenBank
Match: gi|698583316|ref|XP_009778063.1| (PREDICTED: DNA-binding protein RHL1 isoform X2 [Nicotiana sylvestris] >gi|1025315793|ref|XP_016503056.1| PREDICTED: DNA-binding protein RHL1-like isoform X2 [Nicotiana tabacum]) HSP 1 Score: 128.257 bits (321), Expect = 1.143e-31 Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 15 DPALVELRDAE--ARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFE-GKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGGGREREGKEAVGEVE 206
+P +VE + + A + +L++ P + + L PS +K G DI+RK +K R++F P ++ +GGK+G + + T+ P+LYLDFPQG+MK G IV PE R L L F G ++V C+D + ++VFS WWIG + ENPEE FPKE+N Q E L K G G K + GE E
Sbjct: 18 NPDMVEKKRLKKLAISKQMLSENPSRVRTSALSPSKTVIK----HHGKDILRKSQRKNRFLFSFPGLLAPV-SGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPENRYLTLQFSRGGKNVVCEDYFDNMIVFSDAWWIGRKDENPEEARLEFPKELNVQ-------EKLECDFKGGAGATSVKKRSSGECE 200 The following BLAST results are available for this feature:
BLAST of EWM21784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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