rna8910, rna8910 (mRNA) Nannochloropsis gaditana

Overview
Namerna8910
Unique Namerna8910
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1051
Alignment locationKK037250.1:454696..456831 +

Link to JBrowse

Properties
Property NameValue
Productbifunctional dihydrofolate reductase-thymidylate synthase
Orig transcript idgnl|cribi|Naga_100065g11.7386.mrna
Orig protein idgnl|cribi|Naga_100065g11.7386
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:454696..456831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100065g11gene8639Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8910rna8910-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21795.1cds8880Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8910 ID=rna8910|Name=rna8910|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
ATGTACTGTAGCAGGCTCTGTGGCGACAGACAGACGCTGGCGCGGATACT
GGCTTGGACGTGGCGGAACGTGGCCGTATTATCTTCCTTGTGTGCCTTCA
GGCCCCCTGTCCTTCATCACCTCCTCGAATCCTGTAGCACAACGACTCAG
CTCCGTGCTCACTCTTCTCTCATCTCCTTCGCCTCCGCGCTCTTAGACAC
TGGGAATCGACCTGTAGGGCACCCACCCTTTATTACTGTCAATAGGCGTC
CGTTCATGACGGCGGGAGGTAGTATCGAGAAGGCTTATACCGAGTCGGGC
GACGCCTCCTCACTCCCCAGCTTTTCAAAACCTCGAGGAGCCTTTATTGT
CCTTGAAGGCGTAGATCGTTGTGGTAAAACAACACAAGTTGCTCGGGTCG
TTAAAGCCTTGCATGCTCAAGGGCGCGCGGCAGAAGCGATTCGTTTTCCA
GATCGCACCACTACCATCGGTCAAATGATAAACGCCTACCTCGCCAATGC
CACCGACCTGGACGACCGCGTCATTCACCTTCTTTTCTCTGCCAATCGAT
GGGAAGCCATGGCCTCGCTACGCAGCAAGCTTGCCGCGGGAATGACCTTG
GTCTGCGACCGCTATGCATATAGTGGGGTGGCCTTCTCGGCCGCCAAGGA
TGGGATGGATTTCGACTGGTGTAAGCAGTGTGACCGGGGCCTTCCACAGC
CAGACGCGGTGATATATCTGGATATATCTGCGGAGGCCGCCGCGAAACGG
GGGCGGTACGGAGAAGAACGGTACGAAAACCAGGGCATGCAAGGCCGAGT
GAGGGAAAATTTCCAAAAACTGATGGAAGGGGACAGCATCTGGCACGTCG
TGGACGCAGGCGTGTCCCTGGAGGATGTAAGTGAACGCGTGGACAAAGTA
GTCATGGCAACAGCCAAGCGTGTCGAGGAAGAAGGGCTACAGCTTGGGAC
TTTGTGGCCCGCGTGATGGCCTCTTGAGTTTTAAGGCCGACCGCACCGAG
TGCAGGCGGATTGGAGGTGACAAGCAAAGAAAGTGCATGAAAACGAGTCG
G
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protein sequence of rna8910

>rna8910-protein ID=rna8910-protein|Name=rna8910|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MPSTAAAAAMSTSAAAAATGKTEALRGFTIVVAATAKTFGIGKAGQLPWN
LPQDMEHFKRLTACTSVPDKINAVIMGRRTWQSIPEKFRPLRNRLNVVLS
RNPGIREQLNLPQGVRVATSLKAALALLAHGNDASVVEKVFVIGGAAVYR
EAVESEACEAIEFTSIEEERGATPLFADCDAHFPVIPATEYCLVSSTPVL
SQNALRFRFQRYERLDRGPSADLPVGDGPNKVSGAAGNQEEAQYLRLVQE
IIEHGKRRGDRTQTGTLSKFGAQLRFSLRDETFPLLTTKRVFWRGVAEEL
LWFISGSTDANYLKEKKIGIWDGNSSREYLDKLGLSHREEGDLGPVYGFQ
WRHFGAEYSDMHADYTGKGIDQLARAITTIKDNPEDRRIIVSAWNPADLG
KMALPPCHMFCQFYVADGELSCQMYQRSADMGLGVPFNIASYALLTRLVA
QVCGLKAGEFIHTIGDAHVYLNHVDALKEQLTRTPRSFPKLRINPAKKDI
DSFTFEDFTIEGYLPHESLKMKMAV
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mRNA from alignment at KK037250.1:454696..456831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8910 ID=rna8910|Name=rna8910|organism=Nannochloropsis gaditana|type=mRNA|length=2136bp|location=Sequence derived from alignment at KK037250.1:454696..456831+ (Nannochloropsis gaditana)
TACACAGCTCTCCGCCACGGGGACTACGGGTGAACTTTTCAGGCGTCCTG
CACgtcgaagccctccttcagctGGCGCCGGCACACGTTTTCCAACTTCT
TGCTTACTGTTATTGAGCCTTGCATTGTCGATAATCAACGCCGCTGCCCT
CCCAACCACCACATCTTCCAGTTTGTCATTTCCCAAATCCATTTCCATGC
CTTCgaccgctgccgctgccgcaaTGAGCACGAGCGCCGCCGCGGCTGCT
ACTGGCAAGACAGAGGCCCTGCGGGGTTTTACAATCGTGGTGGCCGCCAC
AGCCAAGACCTTCGGCATCGGCAAAGCCGGCCAGCTTCCTTGGAATCTGC
CGCAAGACATGGAGCATTTCAAACGACTCACCGCATGCACCAGTGTGCCT
GACAAAATCAACGCGGTTATTATGGGACGGCGGACGTGGCAGTCCATCCC
CGAGAAGTTTCGCCCACTGCGGAACAGGTTGAACGTTGTCTTGAGTCGGA
ATCCAGGCATCCGGGAACAGCTCAACCTTCCGCAAGGAGTGCGGGTAGCC
ACTTCGTTGAAGGCTGCGCTGGCCCTTCTGGCGCACGGAAACGACGCctc
ggtggtggagaaggtgttTGTGATCGGTGGGGCAGCGGTTTACCGGGAGG
CCGTGGAATCAGAGGCCTGTGAGGCCATCGAGTTCACATCtatcgaggag
gagcggggtgCTACCCCCTTGTTTGCCGACTGCGACGCCCATTTTCCCGT
CATCCCTGCCACTGAATACTGTCTTGTAAGCTCCACGCCTGTTTTGTCGC
AGAATGCTTTGCGTTTCCGTTTTCAACGCTACGAGCGTTTGGATCGCGGG
CCTTCCGCGGATTTGCCGGTCGGCGACGGCCCAAACAAGGTCTCGGGAGC
GGCTGGGAACCAAGAGGAGGCCCAGTACCTGCGACTCGTGCAGGAGATCA
TCGAGCACGGGAAGCGGCGGGGGGACCGGACGCAGACAGGCACCCTCTCA
AAATTTGGCGCCCAGCTTCGGTTTTCCCTGCGTGATGAGACCTTTCCCTT
GCTCACCACCAAGCGGGTCTTTTGGCGCGGGGTGGCCGAAGAACTCTTGT
GGTTCATCTCCGGATCGACCGATGCGAATTAtttgaaggagaaaaaaatt
gGAATCTGGGACGGGAACTCCTCTCGGGAATATCTGGACAAATTGGGCCT
TTCTCaccgggaagagggggattTGGGCCCCGTCTACGGCTTCCAATGGC
GGCATTTCGGGGCGGAGTATTCGGACATGCACGCAGACTACACTGGCAAA
GGCATCGACCAGTTGGCTCGGGCAATCACCACCATCAAGGACAACCCAGA
GGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGAAAGA
TGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGACGGA
GAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGT
GCCGTTCAATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAG
TCTGTGGCTTGAAAGCCGGAGAGTTCATTCACACGATTGGGGATGCACAT
GTGTACCTGAATCATGTAGACGCGCTGAAAGAGCAGCTCACCCGGACCCC
TCGATCTTTCCCGAAGCTGCGGATCAATCCTGCTAAGAAAGATATCGATT
CGTTCACTTTCGAGGACTTTACCATTGAGGGCTATCTACCTCATGAGAGt
ttgaagatgaagatggcGGTGTAGGAGGAGTTCTCGACGGAGGTTAAAAA
AACCGATAACGGAGATGTAGGAGTAAAGCACATCGTTTCTCCGAATAGAA
GCAAGACATAAATGGACGCCATGAAATGATGGATAATTACTTGCCAATGT
TGCGCAATTATTCGAAATCGGCCGAGAGGTACGGTAAGAAGTGACGTGCG
CTGGATTTCCGTACATGCCTTCAAGCACGACGACTTAAAGCACGAGAGGC
AACGTAACGCCGTCCCAGCCGTTGCTTTCGTCCAGGAGAAAATGACCGCT
ATACCATATTTATCGCTCCTCGTTAAATTCTGCTTCACTCATGAAAGCAT
GTGATTCAGGAACGTCTTTACTTAAGGTTTGTTTGG
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Coding sequence (CDS) from alignment at KK037250.1:454696..456831+

>rna8910 ID=rna8910|Name=rna8910|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at KK037250.1:454696..456831+ (Nannochloropsis gaditana)
ATGCCTTCgaccgctgccgctgccgcaaTGAGCACGAGCGCCGCCGCGGC
TGCTACTGGCAAGACAGAGGCCCTGCGGGGTTTTACAATCGTGGTGGCCG
CCACAGCCAAGACCTTCGGCATCGGCAAAGCCGGCCAGCTTCCTTGGAAT
CTGCCGCAAGACATGGAGCATTTCAAACGACTCACCGCATGCACCAGTGT
GCCTGACAAAATCAACGCGGTTATTATGGGACGGCGGACGTGGCAGTCCA
TCCCCGAGAAGTTTCGCCCACTGCGGAACAGGTTGAACGTTGTCTTGAGT
CGGAATCCAGGCATCCGGGAACAGCTCAACCTTCCGCAAGGAGTGCGGGT
AGCCACTTCGTTGAAGGCTGCGCTGGCCCTTCTGGCGCACGGAAACGACG
CctcggtggtggagaaggtgttTGTGATCGGTGGGGCAGCGGTTTACCGG
GAGGCCGTGGAATCAGAGGCCTGTGAGGCCATCGAGTTCACATCtatcga
ggaggagcggggtgCTACCCCCTTGTTTGCCGACTGCGACGCCCATTTTC
CCGTCATCCCTGCCACTGAATACTGTCTTGTAAGCTCCACGCCTGTTTTG
TCGCAGAATGCTTTGCGTTTCCGTTTTCAACGCTACGAGCGTTTGGATCG
CGGGCCTTCCGCGGATTTGCCGGTCGGCGACGGCCCAAACAAGGTCTCGG
GAGCGGCTGGGAACCAAGAGGAGGCCCAGTACCTGCGACTCGTGCAGGAG
ATCATCGAGCACGGGAAGCGGCGGGGGGACCGGACGCAGACAGGCACCCT
CTCAAAATTTGGCGCCCAGCTTCGGTTTTCCCTGCGTGATGAGACCTTTC
CCTTGCTCACCACCAAGCGGGTCTTTTGGCGCGGGGTGGCCGAAGAACTC
TTGTGGTTCATCTCCGGATCGACCGATGCGAATTAtttgaaggagaaaaa
aattgGAATCTGGGACGGGAACTCCTCTCGGGAATATCTGGACAAATTGG
GCCTTTCTCaccgggaagagggggattTGGGCCCCGTCTACGGCTTCCAA
TGGCGGCATTTCGGGGCGGAGTATTCGGACATGCACGCAGACTACACTGG
CAAAGGCATCGACCAGTTGGCTCGGGCAATCACCACCATCAAGGACAACC
CAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGA
AAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGA
CGGAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGG
GTGTGCCGTTCAATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCT
CAAGTCTGTGGCTTGAAAGCCGGAGAGTTCATTCACACGATTGGGGATGC
ACATGTGTACCTGAATCATGTAGACGCGCTGAAAGAGCAGCTCACCCGGA
CCCCTCGATCTTTCCCGAAGCTGCGGATCAATCCTGCTAAGAAAGATATC
GATTCGTTCACTTTCGAGGACTTTACCATTGAGGGCTATCTACCTCATGA
GAGtttgaagatgaagatggcGGTGTAG
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Synonyms
Publications