rna8909, rna8909 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8909
Unique Name	rna8909
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	666
Alignment location	KK037250.1:453233..454283 -

Link to JBrowse

Properties


Property Name	Value
Product	thymidylate kinase
Orig transcript id	gnl\|cribi\|Naga_100065g12.7387.mrna
Orig protein id	gnl\|cribi\|Naga_100065g12.7387
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:453233..454283 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g12	gene8638	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21796.1	cds8879	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8909	rna8909-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:453233..454283-
coding sequence from alignment at KK037250.1:453233..454283-

mRNA sequence

>rna8909 ID=rna8909|Name=rna8909|organism=Nannochloropsis gaditana|type=mRNA|length=666bp
ATGAGGAAGAGGAGGCTGTCACGGTGGGTTCCTTGGTGTCGGTTGGTCAC
CCCCTGTGGGGTTGTTATATCTCAGTACGCACGCACGAAGGTTGGCATCC
ATGTTGAGAGGATTATGTGGGAATCGGGAAAAATCGCGCGACTGAAATGG
CGGTGCACAGGCACATATAGCACCGTTTGGGTGCGGATAGAAGCAAGACG
GGCCTTGCAGAAAGGAAGAAGGCTGGTTGGCGCCGTCGTAGCTATTCACC
TAATTGAGTGCAGAGGCCGGCGAAGAATGTGGCAGGATCGATCTAAGGGA
CGCAGGACCGGACTAGAGAGCGAAACCACGATTGGCTTAGAAGTGTTGCA
TGGGAGGGGGGTGGTGAGAAAACATGTTGAGACTTGCTTGAAATTTACGG
GTTTAGACGCCTGGCAGACTCGGCGATCAAAAAAGGAACAAAAATCAAGA
CACCAGCAATGTGAGACGTCCCAAGGTTACCATGGAGGAGGGAAGGAGGT
GGTGCTTCCCTGGGCGCCGCCGACCTTGCCACAAGAAACCCTCCAGAGTA
AAACAAGCACAAGCCATCGCTACGCAGAATTGGCGCGTGTCGTGTCCGAC
TCGTTTTCATGCACTTTCTTTGCTTGTCACCTCCAATCCGCCTGCACTCG
GTGCGGTCGGCCTTAA

protein sequence of rna8909

>rna8909-protein ID=rna8909-protein|Name=rna8909|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQ
LRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESG
DASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFP
DRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTL
VCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKR
GRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKV
VMATAKRVEEEGLQLGTLWPA

mRNA from alignment at KK037250.1:453233..454283-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8909 ID=rna8909|Name=rna8909|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp|location=Sequence derived from alignment at KK037250.1:453233..454283- (Nannochloropsis gaditana)
ATGTACTGTAGCAGGCTCTGTGGCGACAGACAGACGCTGGCGCGGATACT
GGCTTGGACGTGGCGGAACGTGGCCGTATTATCTTCCTTGTGTGCCTTCA
GGCCCCCTGTCCTTCATCACCTCCTCGAATCCTGTAGCACAACGACTCAG
CTCCGTGCTCACTCTTCTCTCATCTCCTTCGCCTCCGCGCTCTTAGACAC
TGGGAATCGACCTGTAGGGCACCCACCCTTTATTACTGTCAATAGGCGTC
CGTTCATGACGGCGGGAGGTAGTATCGAGAAGGCTTATACCGAGTCGGGC
GACGCCTCCTCACTCCCCAGCTTTTCAAAACCTCGAGGAGCCTTTATTGT
CCTTGAAGGCGTAGATCGTTGTGGTAAAACAACACAAGTTGCTCGGGTCG
TTAAAGCCTTGCATGCTCAAGGGCGCGCGGCAGAAGCGATTCGTTTTCCA
GATCGCACCACTACCATCGGTCAAATGATAAACGCCTACCTCGCCAATGC
CACCGACCTGGACGACCGCGTCATTCACCTTCTTTTCTCTGCCAATCGAT
GGGAAGCCATGGCCTCGCTACGCAGCAAGCTTGCCGCGGGAATGACCTTG
GTCTGCGACCGCTATGCATATAGTGGGGTGGCCTTCTCGGCCGCCAAGGA
TGGGATGGATTTCGACTGGTGTAAGCAGTGTGACCGGGGCCTTCCACAGC
CAGACGCGGTGATATATCTGGATATATCTGCGGAGGCCGCCGCGAAACGG
GGGCGGTACGGAGAAGAACGGTACGAAAACCAGGGCATGCAAGGCCGAGT
GAGGGAAAATTTCCAAAAACTGATGGAAGGGGACAGCATCTGGCACGTCG
TGGACGCAGGCGTGTCCCTGGAGGATGTAAGTGAACGCGTGGACAAAGTA
GTCATGGCAACAGCCAAGCGTGTCGAGGAAGAAGGGCTACAGCTTGGGAC
TTTGTGGCCCGCGTGATGGCCTCTTGAGTTTTAAGGCCGACCGCACCGAG
TGCAGGCGGATTGGAGGTGACAAGCAAAGAAAGTGCATGAAAACGAGTCG
G

Coding sequence (CDS) from alignment at KK037250.1:453233..454283-

>rna8909 ID=rna8909|Name=rna8909|organism=Nannochloropsis gaditana|type=CDS|length=966bp|location=Sequence derived from alignment at KK037250.1:453233..454283- (Nannochloropsis gaditana)
ATGTACTGTAGCAGGCTCTGTGGCGACAGACAGACGCTGGCGCGGATACT
GGCTTGGACGTGGCGGAACGTGGCCGTATTATCTTCCTTGTGTGCCTTCA
GGCCCCCTGTCCTTCATCACCTCCTCGAATCCTGTAGCACAACGACTCAG
CTCCGTGCTCACTCTTCTCTCATCTCCTTCGCCTCCGCGCTCTTAGACAC
TGGGAATCGACCTGTAGGGCACCCACCCTTTATTACTGTCAATAGGCGTC
CGTTCATGACGGCGGGAGGTAGTATCGAGAAGGCTTATACCGAGTCGGGC
GACGCCTCCTCACTCCCCAGCTTTTCAAAACCTCGAGGAGCCTTTATTGT
CCTTGAAGGCGTAGATCGTTGTGGTAAAACAACACAAGTTGCTCGGGTCG
TTAAAGCCTTGCATGCTCAAGGGCGCGCGGCAGAAGCGATTCGTTTTCCA
GATCGCACCACTACCATCGGTCAAATGATAAACGCCTACCTCGCCAATGC
CACCGACCTGGACGACCGCGTCATTCACCTTCTTTTCTCTGCCAATCGAT
GGGAAGCCATGGCCTCGCTACGCAGCAAGCTTGCCGCGGGAATGACCTTG
GTCTGCGACCGCTATGCATATAGTGGGGTGGCCTTCTCGGCCGCCAAGGA
TGGGATGGATTTCGACTGGTGTAAGCAGTGTGACCGGGGCCTTCCACAGC
CAGACGCGGTGATATATCTGGATATATCTGCGGAGGCCGCCGCGAAACGG
GGGCGGTACGGAGAAGAACGGTACGAAAACCAGGGCATGCAAGGCCGAGT
GAGGGAAAATTTCCAAAAACTGATGGAAGGGGACAGCATCTGGCACGTCG
TGGACGCAGGCGTGTCCCTGGAGGATGTAAGTGAACGCGTGGACAAAGTA
GTCATGGCAACAGCCAAGCGTGTCGAGGAAGAAGGGCTACAGCTTGGGAC
TTTGTGGCCCGCGTGA

Synonyms

Publications