EWM21796.1, cds8879 (CDS) Nannochloropsis gaditana

Overview
NameEWM21796.1
Unique Namecds8879
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:453318..454283 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21796.1
Productthymidylate kinase
Orig transcript idgnl|cribi|Naga_100065g12.7387.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:453318..454283 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006233dTDP biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0004798thymidylate kinase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR018095Thymidylate_kin_CS
IPR027417P-loop_NTPase
IPR018094Thymidylate_kinase
Homology
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|585102132|gb|EWM21796.1| (thymidylate kinase [Nannochloropsis gaditana])

HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA 321
            MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA
Sbjct:    1 MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA 321          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|298709115|emb|CBJ31061.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 237.269 bits (604), Expect = 3.134e-74
Identity = 117/223 (52.47%), Postives = 150/223 (67.26%), Query Frame = 0
Query:  101 DASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS----IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            DA++ P+    RGAFI+ EGVDRCGKTTQ   +V++L   G  A  +RFPDRTT IG MIN +L N TD+DDR +HLLFSANRWEA + +R  L AG T+VCDRYAYSGVAFSA+K G+   WCK  DRGLP PD +++LDIS E A KRG++GEERYE +  Q  VR  F  LME D      W ++DA   +  + + + K+  +    V  EG ++G+LW
Sbjct:    6 DATAGPA---KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLRNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDANREIGSIQDEIQKIGTSVVGEV--EGKEIGSLW 223          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|551674572|ref|XP_005840041.1| (hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712] >gi|428184205|gb|EKX53061.1| hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712])

HSP 1 Score: 235.728 bits (600), Expect = 7.791e-74
Identity = 112/209 (53.59%), Postives = 152/209 (72.73%), Query Frame = 0
Query:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGD-SIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            RGA IVLEG+DR GK+TQV R+V+ L + G+ A  + FPDRTTT+G +IN YL +  DLDD VIHLLFSANRWEA  S+R +L++G TL+ DRYAYSGVAFSAAK  +D +WCK  DRGLP PD VIYLD+S++ A +RG YGEERYE +  Q +VR  F+ LM  + ++W  VDA  ++++V+E ++ +      +V ++   +G+LW
Sbjct:    4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLDDAVIHLLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGTLDIEWCKGPDRGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAMWRRVDANKTMDEVTEEIEGIATKIVDQVTDK--PIGSLW 210          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1168877663|ref|XP_020487604.1| (thymidylate kinase [Labrus bergylta])

HSP 1 Score: 234.958 bits (598), Expect = 1.417e-73
Identity = 111/209 (53.11%), Postives = 144/209 (68.90%), Query Frame = 0
Query:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            RGA IVLEGVD+ GKTTQ  ++V+AL   G  AE +RFPDRTTTIGQ+I+AYL   +DL+D  +HLLFSANRWE +  ++ KL  G TLV DRYA+SGVAF++AK G   DWCK  D GLP+PD V++L +S   AA+RG++GEERYE    Q  V++ F+ LM   S+ W V+DA  S++DV E +    + T      + LQLG LW
Sbjct:    5 RGALIVLEGVDKAGKTTQCKKLVQALQQSGSPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPLIKKKLEQGTTLVVDRYAFSGVAFTSAKPGFSLDWCKNPDVGLPKPDLVMFLKLSPAEAAQRGQFGEERYETSAFQKTVQQKFEHLMNDSSVNWQVIDASKSVDDVHEDITTHSLNTINTA--QNLQLGELW 211          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1210523852|dbj|GAX17176.1| (dTMP kinase [Fistulifera solaris])

HSP 1 Score: 235.343 bits (599), Expect = 1.549e-73
Identity = 114/217 (52.53%), Postives = 154/217 (70.97%), Query Frame = 0
Query:  105 LPSFSKP----RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS--IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQL 315
            LP  + P    RGAF +LEGVDRCGKTTQ  R+++ L   G AA A+RFP+RTT+ GQ+I++YL   +++DDR IHLLFSANRWE+  ++  +L AG ++VCDRYAYSGVAFSA+KD MD +WC+  DRGLP PD VI+LD+S E A +RG YG+ERYE + MQ RVR+ FQ+L + D    W  V+A  +++ V E +  +   T ++V+ E  QL
Sbjct:    2 LPPSTAPAKPTRGAFFLLEGVDRCGKTTQCQRLLQRLVQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADTIVQQLRAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQLRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEEDIWSIAQQTLEQVQPEVRQL 218          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1210519675|dbj|GAX21444.1| (dTMP kinase [Fistulifera solaris])

HSP 1 Score: 234.187 bits (596), Expect = 4.691e-73
Identity = 115/215 (53.49%), Postives = 155/215 (72.09%), Query Frame = 0
Query:  105 LP-SFSKP-RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS--IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQL 315
            LP S +KP RGAF +LEGVDRCGKTTQ  R+++ L   G AA A+RFP+RTT+ GQ+I++YL   +++DDR IHLLFSANRWE+   +  +L AG ++VCDRYAYSGVAFSA+KD MD +WC+  DRGLP PD VI+LD+S E A +RG YG+ERYE + MQ RVR+ FQ+L + D    W  V+A  +++ V + +  +   T ++V+ E  QL
Sbjct:    2 LPHSTAKPTRGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQVQPEVRQL 216          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1072232958|gb|OEU17689.1| (Thymidylate_kin-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 233.417 bits (594), Expect = 1.206e-72
Identity = 115/221 (52.04%), Postives = 155/221 (70.14%), Query Frame = 0
Query:  109 SKP--RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLA-AGMTLVCDRYAYSGVAFSAAKDGMD--FDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-----WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            +KP  RGAFIVLEGVDRCGKTTQ + ++K L   G AA A+RFPDRTT +G +IN YL + ++LDDR +HLLFSANRWEA  +LR  L   G  ++CDRYA+SGVAFS++K  ++   DWC+ CD GLP PDA+I+LDI+ E A +RG YG ERYE + MQ RVR+ F +L E D       W +V+A  ++E+V   ++++V  T ++V+ E   +G LW
Sbjct:   11 AKPASRGAFIVLEGVDRCGKTTQASLLIKHLVGLGLAAVAMRFPDRTTMVGDLINQYLQSKSELDDRAVHLLFSANRWEAAPALRKTLIDDGANIICDRYAHSGVAFSSSKPSLEDNLDWCRACDVGLPAPDAIIFLDIAQEEAEQRGGYGGERYEKKEMQQRVRKRFSQLQEMDEKDGRIPWFIVNAAQTIEEVQIEINEIVEKTVEKVQSEEQPVGLLW 231          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1188105034|ref|XP_020774375.1| (thymidylate kinase [Boleophthalmus pectinirostris])

HSP 1 Score: 230.72 bits (587), Expect = 6.945e-72
Identity = 107/209 (51.20%), Postives = 147/209 (70.33%), Query Frame = 0
Query:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            RGA IVLEGVD+ GKTTQ  ++V+AL   GR AE +RFPDRTTTIGQ+I+AYL   +DL+D  +HLLFSANRWE +  ++ KL  G TLV DRYA+SG AF++AK G   +WCK  D GLP+PD V++L ++   AA+RG++GEERYEN   Q RV++ F++LM+  ++ W V+DA  S+EDV   +    +    + ++  + LG LW
Sbjct:    5 RGALIVLEGVDKAGKTTQCKKLVQALELSGRPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPLMKKKLEQGTTLVVDRYAFSGAAFTSAKPGFCLNWCKNPDVGLPKPDLVMFLQLNPSEAAQRGQFGEERYENSTFQKRVQQRFEELMKDTTVNWKVIDASQSIEDVHTNIQDHSLNAINKAQD--MPLGVLW 211          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1041114302|ref|XP_017280712.1| (PREDICTED: thymidylate kinase [Kryptolebias marmoratus])

HSP 1 Score: 230.72 bits (587), Expect = 7.578e-72
Identity = 110/209 (52.63%), Postives = 144/209 (68.90%), Query Frame = 0
Query:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            RGA IVLEGVDR GKTTQ  ++V+AL   GR AE +RFPDRTTTIGQ+I+AYL   +DL+D  +HLLFSANRWE + S++ KL  G+TLV DRYA+SG AF++AK G   DWCK+ D GLP+PD V++L +S   A  RG++G ERYE    Q  V++ F++LM+  S+ W V+DA  S+EDV + +    + T      E   LG LW
Sbjct:    5 RGALIVLEGVDRAGKTTQCKKLVQALQQVGRPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPSMKKKLEQGITLVVDRYAFSGAAFTSAKPGFCIDWCKKPDVGLPKPDLVMFLQLSPVEATLRGQFGNERYETSDFQKSVQQKFEQLMKDPSVNWKVIDASQSIEDVHDNIRTHTLNTINTA--ENTPLGELW 211          
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|957856523|ref|XP_014677638.1| (PREDICTED: thymidylate kinase-like [Priapulus caudatus] >gi|957856526|ref|XP_014677639.1| PREDICTED: thymidylate kinase-like [Priapulus caudatus])

HSP 1 Score: 230.335 bits (586), Expect = 1.121e-71
Identity = 112/208 (53.85%), Postives = 144/208 (69.23%), Query Frame = 0
Query:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
            RGA IV EG DRCGKTTQ  ++V  L ++G+  E +RFPD +T IG+M   YL    +L+D  IHLLF+ANRWEA   +R KL +G TL+ DRY++SGVAFSA K GM+  WCK  + GLP+PD V+YLD+SAEAAAKRG YG+ERYE  G+QGRVRE +++L   D  W VVDA  S+E +  R+  VV+ T +R   +   L  LW
Sbjct:    8 RGALIVFEGCDRCGKTTQCKKLVDVLKSEGKNVEFMRFPDGSTHIGKMCREYLECGIELEDHAIHLLFAANRWEAAPKMREKLMSGTTLIVDRYSFSGVAFSAVKPGMELAWCKHAEAGLPRPDLVLYLDLSAEAAAKRGSYGDERYEKVGLQGRVRETYRRLF--DERWSVVDADTSVEGLHTRLRAVVVTTMERSHHQ--PLARLW 211          
The following BLAST results are available for this feature:
BLAST of EWM21796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102132|gb|EWM21796.1|0.000e+0100.00thymidylate kinase [Nannochloropsis gaditana][more]
gi|298709115|emb|CBJ31061.1|3.134e-7452.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|551674572|ref|XP_005840041.1|7.791e-7453.59hypothetical protein GUITHDRAFT_64796 [Guillardia ... [more]
gi|1168877663|ref|XP_020487604.1|1.417e-7353.11thymidylate kinase [Labrus bergylta][more]
gi|1210523852|dbj|GAX17176.1|1.549e-7352.53dTMP kinase [Fistulifera solaris][more]
gi|1210519675|dbj|GAX21444.1|4.691e-7353.49dTMP kinase [Fistulifera solaris][more]
gi|1072232958|gb|OEU17689.1|1.206e-7252.04Thymidylate_kin-domain-containing protein [Fragila... [more]
gi|1188105034|ref|XP_020774375.1|6.945e-7251.20thymidylate kinase [Boleophthalmus pectinirostris][more]
gi|1041114302|ref|XP_017280712.1|7.578e-7252.63PREDICTED: thymidylate kinase [Kryptolebias marmor... [more]
gi|957856523|ref|XP_014677638.1|1.121e-7153.85PREDICTED: thymidylate kinase-like [Priapulus caud... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8909rna8909Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications