EWM21796.1, cds8879 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|585102132|gb|EWM21796.1| (thymidylate kinase [Nannochloropsis gaditana]) HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query: 1 MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA 321
MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA
Sbjct: 1 MYCSRLCGDRQTLARILAWTWRNVAVLSSLCAFRPPVLHHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWPA 321
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|298709115|emb|CBJ31061.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 237.269 bits (604), Expect = 3.134e-74 Identity = 117/223 (52.47%), Postives = 150/223 (67.26%), Query Frame = 0
Query: 101 DASSLPSFSKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS----IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
DA++ P+ RGAFI+ EGVDRCGKTTQ +V++L G A +RFPDRTT IG MIN +L N TD+DDR +HLLFSANRWEA + +R L AG T+VCDRYAYSGVAFSA+K G+ WCK DRGLP PD +++LDIS E A KRG++GEERYE + Q VR F LME D W ++DA + + + + K+ + V EG ++G+LW
Sbjct: 6 DATAGPA---KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLRNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDANREIGSIQDEIQKIGTSVVGEV--EGKEIGSLW 223
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|551674572|ref|XP_005840041.1| (hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712] >gi|428184205|gb|EKX53061.1| hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712]) HSP 1 Score: 235.728 bits (600), Expect = 7.791e-74 Identity = 112/209 (53.59%), Postives = 152/209 (72.73%), Query Frame = 0
Query: 112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGD-SIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
RGA IVLEG+DR GK+TQV R+V+ L + G+ A + FPDRTTT+G +IN YL + DLDD VIHLLFSANRWEA S+R +L++G TL+ DRYAYSGVAFSAAK +D +WCK DRGLP PD VIYLD+S++ A +RG YGEERYE + Q +VR F+ LM + ++W VDA ++++V+E ++ + +V ++ +G+LW
Sbjct: 4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLDDAVIHLLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGTLDIEWCKGPDRGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAMWRRVDANKTMDEVTEEIEGIATKIVDQVTDK--PIGSLW 210
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1168877663|ref|XP_020487604.1| (thymidylate kinase [Labrus bergylta]) HSP 1 Score: 234.958 bits (598), Expect = 1.417e-73 Identity = 111/209 (53.11%), Postives = 144/209 (68.90%), Query Frame = 0
Query: 112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
RGA IVLEGVD+ GKTTQ ++V+AL G AE +RFPDRTTTIGQ+I+AYL +DL+D +HLLFSANRWE + ++ KL G TLV DRYA+SGVAF++AK G DWCK D GLP+PD V++L +S AA+RG++GEERYE Q V++ F+ LM S+ W V+DA S++DV E + + T + LQLG LW
Sbjct: 5 RGALIVLEGVDKAGKTTQCKKLVQALQQSGSPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPLIKKKLEQGTTLVVDRYAFSGVAFTSAKPGFSLDWCKNPDVGLPKPDLVMFLKLSPAEAAQRGQFGEERYETSAFQKTVQQKFEHLMNDSSVNWQVIDASKSVDDVHEDITTHSLNTINTA--QNLQLGELW 211
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1210523852|dbj|GAX17176.1| (dTMP kinase [Fistulifera solaris]) HSP 1 Score: 235.343 bits (599), Expect = 1.549e-73 Identity = 114/217 (52.53%), Postives = 154/217 (70.97%), Query Frame = 0
Query: 105 LPSFSKP----RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS--IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQL 315
LP + P RGAF +LEGVDRCGKTTQ R+++ L G AA A+RFP+RTT+ GQ+I++YL +++DDR IHLLFSANRWE+ ++ +L AG ++VCDRYAYSGVAFSA+KD MD +WC+ DRGLP PD VI+LD+S E A +RG YG+ERYE + MQ RVR+ FQ+L + D W V+A +++ V E + + T ++V+ E QL
Sbjct: 2 LPPSTAPAKPTRGAFFLLEGVDRCGKTTQCQRLLQRLVQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADTIVQQLRAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQLRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEEDIWSIAQQTLEQVQPEVRQL 218
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1210519675|dbj|GAX21444.1| (dTMP kinase [Fistulifera solaris]) HSP 1 Score: 234.187 bits (596), Expect = 4.691e-73 Identity = 115/215 (53.49%), Postives = 155/215 (72.09%), Query Frame = 0
Query: 105 LP-SFSKP-RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDS--IWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQL 315
LP S +KP RGAF +LEGVDRCGKTTQ R+++ L G AA A+RFP+RTT+ GQ+I++YL +++DDR IHLLFSANRWE+ + +L AG ++VCDRYAYSGVAFSA+KD MD +WC+ DRGLP PD VI+LD+S E A +RG YG+ERYE + MQ RVR+ FQ+L + D W V+A +++ V + + + T ++V+ E QL
Sbjct: 2 LPHSTAKPTRGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQVQPEVRQL 216
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1072232958|gb|OEU17689.1| (Thymidylate_kin-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 233.417 bits (594), Expect = 1.206e-72 Identity = 115/221 (52.04%), Postives = 155/221 (70.14%), Query Frame = 0
Query: 109 SKP--RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLA-AGMTLVCDRYAYSGVAFSAAKDGMD--FDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-----WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
+KP RGAFIVLEGVDRCGKTTQ + ++K L G AA A+RFPDRTT +G +IN YL + ++LDDR +HLLFSANRWEA +LR L G ++CDRYA+SGVAFS++K ++ DWC+ CD GLP PDA+I+LDI+ E A +RG YG ERYE + MQ RVR+ F +L E D W +V+A ++E+V ++++V T ++V+ E +G LW
Sbjct: 11 AKPASRGAFIVLEGVDRCGKTTQASLLIKHLVGLGLAAVAMRFPDRTTMVGDLINQYLQSKSELDDRAVHLLFSANRWEAAPALRKTLIDDGANIICDRYAHSGVAFSSSKPSLEDNLDWCRACDVGLPAPDAIIFLDIAQEEAEQRGGYGGERYEKKEMQQRVRKRFSQLQEMDEKDGRIPWFIVNAAQTIEEVQIEINEIVEKTVEKVQSEEQPVGLLW 231
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1188105034|ref|XP_020774375.1| (thymidylate kinase [Boleophthalmus pectinirostris]) HSP 1 Score: 230.72 bits (587), Expect = 6.945e-72 Identity = 107/209 (51.20%), Postives = 147/209 (70.33%), Query Frame = 0
Query: 112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
RGA IVLEGVD+ GKTTQ ++V+AL GR AE +RFPDRTTTIGQ+I+AYL +DL+D +HLLFSANRWE + ++ KL G TLV DRYA+SG AF++AK G +WCK D GLP+PD V++L ++ AA+RG++GEERYEN Q RV++ F++LM+ ++ W V+DA S+EDV + + + ++ + LG LW
Sbjct: 5 RGALIVLEGVDKAGKTTQCKKLVQALELSGRPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPLMKKKLEQGTTLVVDRYAFSGAAFTSAKPGFCLNWCKNPDVGLPKPDLVMFLQLNPSEAAQRGQFGEERYENSTFQKRVQQRFEELMKDTTVNWKVIDASQSIEDVHTNIQDHSLNAINKAQD--MPLGVLW 211
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|1041114302|ref|XP_017280712.1| (PREDICTED: thymidylate kinase [Kryptolebias marmoratus]) HSP 1 Score: 230.72 bits (587), Expect = 7.578e-72 Identity = 110/209 (52.63%), Postives = 144/209 (68.90%), Query Frame = 0
Query: 112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI-WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
RGA IVLEGVDR GKTTQ ++V+AL GR AE +RFPDRTTTIGQ+I+AYL +DL+D +HLLFSANRWE + S++ KL G+TLV DRYA+SG AF++AK G DWCK+ D GLP+PD V++L +S A RG++G ERYE Q V++ F++LM+ S+ W V+DA S+EDV + + + T E LG LW
Sbjct: 5 RGALIVLEGVDRAGKTTQCKKLVQALQQVGRPAEMMRFPDRTTTIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPSMKKKLEQGITLVVDRYAFSGAAFTSAKPGFCIDWCKKPDVGLPKPDLVMFLQLSPVEATLRGQFGNERYETSDFQKSVQQKFEQLMKDPSVNWKVIDASQSIEDVHDNIRTHTLNTINTA--ENTPLGELW 211
BLAST of EWM21796.1 vs. NCBI_GenBank
Match: gi|957856523|ref|XP_014677638.1| (PREDICTED: thymidylate kinase-like [Priapulus caudatus] >gi|957856526|ref|XP_014677639.1| PREDICTED: thymidylate kinase-like [Priapulus caudatus]) HSP 1 Score: 230.335 bits (586), Expect = 1.121e-71 Identity = 112/208 (53.85%), Postives = 144/208 (69.23%), Query Frame = 0
Query: 112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319
RGA IV EG DRCGKTTQ ++V L ++G+ E +RFPD +T IG+M YL +L+D IHLLF+ANRWEA +R KL +G TL+ DRY++SGVAFSA K GM+ WCK + GLP+PD V+YLD+SAEAAAKRG YG+ERYE G+QGRVRE +++L D W VVDA S+E + R+ VV+ T +R + L LW
Sbjct: 8 RGALIVFEGCDRCGKTTQCKKLVDVLKSEGKNVEFMRFPDGSTHIGKMCREYLECGIELEDHAIHLLFAANRWEAAPKMREKLMSGTTLIVDRYSFSGVAFSAVKPGMELAWCKHAEAGLPRPDLVLYLDLSAEAAAKRGSYGDERYEKVGLQGRVRETYRRLF--DERWSVVDADTSVEGLHTRLRAVVVTTMERSHHQ--PLARLW 211 The following BLAST results are available for this feature:
BLAST of EWM21796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|