rna8908, rna8908 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8908
Unique Name	rna8908
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2310
Alignment location	KK037250.1:452390..453303 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100065g13.7379.mrna
Orig protein id	gnl\|cribi\|Naga_100065g13.7379
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:452390..453303 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g13	gene8637	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8908	rna8908-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21788.1	cds8878	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:452390..453303+
coding sequence from alignment at KK037250.1:452390..453303+

mRNA sequence

>rna8908 ID=rna8908|Name=rna8908|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp
ATGGTCACAACATCGCAAGACTTGTGGCTCTCCATTTTTGTTGTGGCTTT
CTCTGTCATCGGCTTGGCGTTTGCGGCAATTCAATTTAAATTGATCGCCG
ACATCCAAATCATCTCTTCCACGGACGGCGCCAGTAATGGGGAAGCTGGC
CGCGCCGGAGGGGATAGTGAGGTAACTAAACGTCTGAAAGACATTTCTGG
TGCGATATCTACGGGTGCCGACGCATTTTTGCACGCTGAGTACCTGATTT
GCGTTTGGTTTTCGATCATCTTTGCCTGCATCATCTTCGCCTTTGTGTCG
TGGGGCTCCACTCGCGTTCCCGGGAACTCGACGACCGACGGGCTCATCCA
AGGGGCTTTGACTACCGTGGCTTTCCTTCTTGGTGCCTTCACCTCCATGC
TCTCTGGCTGGATTGGAATGAAAGTCGCCGTCTTCGCCAACGTCCGAACC
ACCATCGCCGCCCAGAAGCCTGGGTGGACGGAGTGCTTCAACACCGCCTT
CCGGGCGGGAGGCGTAATGGGATTTGCCTTGACCTCATTGGCGATTCTCA
TCCTCTACATTGCCTTGCAACTTTACAAGATCCAGTACCCGAGCTCCAGC
GAGTGGTTCATGGTGATGGAGGCTATCTCCGGGTATGGTTTGGGCGGGTC
CTCTATCGCCATGTTCGGCCGCGTGGGCGGAGGTATCTATACCAAGGCGG
CCGACGTGGGCGCAGATCTGGTAGGGAAAGTGGTGCACGGTATTCCGGAA
GACGATCCTCGCAATCCGGCCGTGATAGCCGACAACGTGGGTGACAACGT
AGGGGACGTGGCAGGGATGGGGGCGGATCTGTTCGGCTCTTTTGCCGAGT
CGACCTGCGCCGCGTTGGTGATTGCCTCCCAGGCCGACGAGGTCGTGGAC
GGAATCGTCAAGGCCGATTATTTGTACAACTACAGCTGGAGCGCGGTTCT
TTTCCCCTTGGTCATCTCGGCGACGGGGCTCATCATCTGCCTTCTCTCCT
CCTTTGTCGCCACGCACCTTCTCCCCGTCCGCAAGGAGAAGGACGTGGAG
AATGCCTTGAAAATCCAGCTCATTGTCACGACCCTGGCCGTCATCCCCGT
CGTCTTCGGACTGGCCCACTGGTTCCTGCCGGGCACGTTCTCCCTCTCGG
GCGTGGGCAGCACGGTACCCCAAGGCACGCCCGACAAGGCCGCCGGCGCC
ATTGTGGCGGGCGCCTTGGGAGGTCTGATTATCGGGCTGATCACTGAGTT
CTATACATCCCATTCCTTTAAACCGGTCCGGGAGGTGGCGAACGCCTGCA
AGACCGGGGCCGCCACCAACATCATTTACGGCCTGGCGCTGGGCTATAAG
TCCTGCATCATCCCCGTCTTCATTCTGGCGATCGTCATCTTCATCGGTTT
TTACACCTTGAACATGTACGGCGTCGCGCTGGCCGCCATTGGGATGCTCG
TCACCCTGGCCACGGGCCTGACCATCGACGCCTACGGCCCGGTCTGCGAC
AACGCGGGTGGGATCGCCGAGATGGCCCTGCAAGACTACCCGGAGGTTCG
TGAGAAAACCGACGCCCTGGACGCGGCTGGCAATACCACGGCGGCTATTG
GCAAAGGTTTTGCGATTGGATCGGCGGCATTGGTCTCCCTGGCCCTGTAC
GGAGCCTTCGCAGTCCGCATTGGGATTCGAAACGGGGTGAACATTTTGTC
CCCTGTGACCTTCGCCTTCCTGCTGATCGGCTCCAACCTGCCCTACTGGT
TTTCTGCCTTGACGATGAAATCCGTGGGCACGGCCGCCATGCAGATGGTG
ATGGAAGTCGAGCGTCAGTTCCGAGAACAACCTCAGCTCCTGAATGAGGG
CACTACATTGCGTCCCGATTACACACGCTGCGTGGACATCTCCACCAAGG
CCGCCCTCAAGGAGATGGTCCCACCCGCCGCGCTGGTGATGCTGTCCCCG
TTGATCGCCGGCACGTTCTTTGGGAAGTACGCGGTGGCGGGCGTCTTGAC
CGGCGGCCTGGTCTCGGGGGTGCAGCTGGCTGTCTCCATGTCCAACACCG
GAGGGGCCTGGGACAACGCCAAGAAATACATCGAGAAGCAGAGCCCGGAA
CACGAGCTCCAGGGCAAGGGTTCGGACATCCACAAGGCGGCCGTGGTCGG
TGACACGGTGGGCGACCCCCTCAAGGACACGTCTGGGCCGTCTTTGAACA
TCCTCATGAAGCTGATGGCGATCATTTCCTTGGTCTTCGCACCCTATTTC
TTGGCCATCAACGACGGAAACGGGGTCTTCCACCAGATCACGGAGAGCTC
AGTGCTCTGA

protein sequence of rna8908

>rna8908-protein ID=rna8908-protein|Name=rna8908|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MRKRRLSRWVPWCRLVTPCGVVISQYARTKVGIHVERIMWESGKIARLKW
RCTGTYSTVWVRIEARRALQKGRRLVGAVVAIHLIECRGRRRMWQDRSKG
RRTGLESETTIGLEVLHGRGVVRKHVETCLKFTGLDAWQTRRSKKEQKSR
HQQCETSQGYHGGGKEVVLPWAPPTLPQETLQSKTSTSHRYAELARVVSD
SFSCTFFACHLQSACTRCGRP

mRNA from alignment at KK037250.1:452390..453303+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8908 ID=rna8908|Name=rna8908|organism=Nannochloropsis gaditana|type=mRNA|length=914bp|location=Sequence derived from alignment at KK037250.1:452390..453303+ (Nannochloropsis gaditana)
atgaggaagaggaggctgtCACGGTGGGTTCCTTGGTGTCGGTTGGTCAC
CCCCTGTGGGGTTGTTATATCTCAGTACGCACGCACGAAGGTTGGCATCC
ATGTTGAGAGGATTATGTGGGAATCGGGAAAAATCGCGCGACTGAAATGG
CGGTGCACAGGCACATATAGCACCGTGTCCTaggagcaggtggtggtCTG
GAAACATGGATTCCTTGTCTAAGAGTAGGTTTGGGTGCGGATAGAAGCAA
GACGGGCCTtgcagaaaggaagaaggctgGTTGGCGCCGTCGTAGCTATT
CACCTAATTGAGTGCAGAGGCCGGCGAAGAATGTGTTTTTTGCGAGGGGG
AAATTAGGTCGGGAAGTTGAGAAGGGGGGTTCCTGGATGACCGCGTAGGG
CAGGATCGATCTAAGGGACGCAGGACCGGACTAGAGAGCGAAACCACGAT
TGGCTTAGAAGTGTTGCATGGGAGGTTTTCTTAGGGAAAGAGTAATGGCG
GGAGTGATCAAGACTCGGAAAGGGTTGAGTGCAGATGCAAGGAGAtgagg
ggaggtgaggggggTGGTGAGAAAACATGTTGAGACTTGCTTGAAATTTA
CGGGTTTAGACGCCGTCGTTCGAAAGCGTTCGATGAGAGTCCGTCATCTT
TCTAGATAGTGGCAGACTCGGCGATCAAAAAAGGAACAAAAATCAAGACA
CCAGCAATGTGAGACGTCCCAAGGTtaccatggaggagggaaggaggtgg
tgcttCCCTGGGCGCCGCCGACCTTGCCACAAGAAACCCTCCAGAGTAAA
ACAAGCACAAGCCATCGCTACGCAGAATTGGCGCGTGTCGTGTCCGACTC
GTTTTCATGCACTTTCTTTGCTTGTCACCTCCAATCCGCCTGCACTCGGT
GCGGTCGGCCTTAA

Coding sequence (CDS) from alignment at KK037250.1:452390..453303+

>rna8908 ID=rna8908|Name=rna8908|organism=Nannochloropsis gaditana|type=CDS|length=3330bp|location=Sequence derived from alignment at KK037250.1:452390..453303+ (Nannochloropsis gaditana)
atgaggaagaggaggctgtCACGGTGGGTTCCTTGGTGTCGGTTGGTCAC
CCCCTGTGGGGTTGTTATATCTCAGTACGCACGCACGAAGGTTGGCATCC
ATGTTGAGAGGATTATGTGGGAATCGGGAAAAATCGCGCGACTGAAATGG
CGGTGCACAGGCACATATAGCACCGTTTGGGTGCGGATAGAAGCAAGACG
GGCCTtgcagaaaggaagaaggctgGTTGGCGCCGTCGTAGCTATTCACC
TAATTGAGTGCAGAGGCCGGCGAAGAATGTGGCAGGATCGATCTAAGGGA
CGCAGGACCGGACTAGAGAGCGAAACCACGATTGGCTTAGAAGTGTTGCA
TGGGAGgggggTGGTGAGAAAACATGTTGAGACTTGCTTGAAATTTACGG
GTTTAGACGCCTGGCAGACTCGGCGATCAAAAAAGGAACAAAAATCAAGA
CACCAGCAATGTGAGACGTCCCAAGGTtaccatggaggagggaaggaggt
ggtgcttCCCTGGGCGCCGCCGACCTTGCCACAAGAAACCCTCCAGAGTA
AAACAAGCACAAGCCATCGCTACGCAGAATTGGCGCGTGTCGTGTCCGAC
TCGTTTTCATGCACTTTCTTTGCTTGTCACCTCCAATCCGCCTGCACTCG
GTGCGGTCGGCCTTAAatgaggaagaggaggctgtCACGGTGGGTTCCTT
GGTGTCGGTTGGTCACCCCCTGTGGGGTTGTTATATCTCAGTACGCACGC
ACGAAGGTTGGCATCCATGTTGAGAGGATTATGTGGGAATCGGGAAAAAT
CGCGCGACTGAAATGGCGGTGCACAGGCACATATAGCACCGTTTGGGTGC
GGATAGAAGCAAGACGGGCCTtgcagaaaggaagaaggctgGTTGGCGCC
GTCGTAGCTATTCACCTAATTGAGTGCAGAGGCCGGCGAAGAATGTGGCA
GGATCGATCTAAGGGACGCAGGACCGGACTAGAGAGCGAAACCACGATTG
GCTTAGAAGTGTTGCATGGGAGgggggTGGTGAGAAAACATGTTGAGACT
TGCTTGAAATTTACGGGTTTAGACGCCTGGCAGACTCGGCGATCAAAAAA
GGAACAAAAATCAAGACACCAGCAATGTGAGACGTCCCAAGGTtaccatg
gaggagggaaggaggtggtgcttCCCTGGGCGCCGCCGACCTTGCCACAA
GAAACCCTCCAGAGTAAAACAAGCACAAGCCATCGCTACGCAGAATTGGC
GCGTGTCGTGTCCGACTCGTTTTCATGCACTTTCTTTGCTTGTCACCTCC
AATCCGCCTGCACTCGGTGCGGTCGGCCTTAAatgaggaagaggaggctg
tCACGGTGGGTTCCTTGGTGTCGGTTGGTCACCCCCTGTGGGGTTGTTAT
ATCTCAGTACGCACGCACGAAGGTTGGCATCCATGTTGAGAGGATTATGT
GGGAATCGGGAAAAATCGCGCGACTGAAATGGCGGTGCACAGGCACATAT
AGCACCGTTTGGGTGCGGATAGAAGCAAGACGGGCCTtgcagaaaggaag
aaggctgGTTGGCGCCGTCGTAGCTATTCACCTAATTGAGTGCAGAGGCC
GGCGAAGAATGTGGCAGGATCGATCTAAGGGACGCAGGACCGGACTAGAG
AGCGAAACCACGATTGGCTTAGAAGTGTTGCATGGGAGgggggTGGTGAG
AAAACATGTTGAGACTTGCTTGAAATTTACGGGTTTAGACGCCTGGCAGA
CTCGGCGATCAAAAAAGGAACAAAAATCAAGACACCAGCAATGTGAGACG
TCCCAAGGTtaccatggaggagggaaggaggtggtgcttCCCTGGGCGCC
GCCGACCTTGCCACAAGAAACCCTCCAGAGTAAAACAAGCACAAGCCATC
GCTACGCAGAATTGGCGCGTGTCGTGTCCGACTCGTTTTCATGCACTTTC
TTTGCTTGTCACCTCCAATCCGCCTGCACTCGGTGCGGTCGGCCTTAAat
gaggaagaggaggctgtCACGGTGGGTTCCTTGGTGTCGGTTGGTCACCC
CCTGTGGGGTTGTTATATCTCAGTACGCACGCACGAAGGTTGGCATCCAT
GTTGAGAGGATTATGTGGGAATCGGGAAAAATCGCGCGACTGAAATGGCG
GTGCACAGGCACATATAGCACCGTTTGGGTGCGGATAGAAGCAAGACGGG
CCTtgcagaaaggaagaaggctgGTTGGCGCCGTCGTAGCTATTCACCTA
ATTGAGTGCAGAGGCCGGCGAAGAATGTGGCAGGATCGATCTAAGGGACG
CAGGACCGGACTAGAGAGCGAAACCACGATTGGCTTAGAAGTGTTGCATG
GGAGgggggTGGTGAGAAAACATGTTGAGACTTGCTTGAAATTTACGGGT
TTAGACGCCTGGCAGACTCGGCGATCAAAAAAGGAACAAAAATCAAGACA
CCAGCAATGTGAGACGTCCCAAGGTtaccatggaggagggaaggaggtgg
tgcttCCCTGGGCGCCGCCGACCTTGCCACAAGAAACCCTCCAGAGTAAA
ACAAGCACAAGCCATCGCTACGCAGAATTGGCGCGTGTCGTGTCCGACTC
GTTTTCATGCACTTTCTTTGCTTGTCACCTCCAATCCGCCTGCACTCGGT
GCGGTCGGCCTTAAatgaggaagaggaggctgtCACGGTGGGTTCCTTGG
TGTCGGTTGGTCACCCCCTGTGGGGTTGTTATATCTCAGTACGCACGCAC
GAAGGTTGGCATCCATGTTGAGAGGATTATGTGGGAATCGGGAAAAATCG
CGCGACTGAAATGGCGGTGCACAGGCACATATAGCACCGTTTGGGTGCGG
ATAGAAGCAAGACGGGCCTtgcagaaaggaagaaggctgGTTGGCGCCGT
CGTAGCTATTCACCTAATTGAGTGCAGAGGCCGGCGAAGAATGTGGCAGG
ATCGATCTAAGGGACGCAGGACCGGACTAGAGAGCGAAACCACGATTGGC
TTAGAAGTGTTGCATGGGAGgggggTGGTGAGAAAACATGTTGAGACTTG
CTTGAAATTTACGGGTTTAGACGCCTGGCAGACTCGGCGATCAAAAAAGG
AACAAAAATCAAGACACCAGCAATGTGAGACGTCCCAAGGTtaccatgga
ggagggaaggaggtggtgcttCCCTGGGCGCCGCCGACCTTGCCACAAGA
AACCCTCCAGAGTAAAACAAGCACAAGCCATCGCTACGCAGAATTGGCGC
GTGTCGTGTCCGACTCGTTTTCATGCACTTTCTTTGCTTGTCACCTCCAA
TCCGCCTGCACTCGGTGCGGTCGGCCTTAA

Synonyms

Publications