rna8906, rna8906 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8906
Unique Name	rna8906
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3834
Alignment location	KK037250.1:446479..448559 +

Link to JBrowse

Properties


Property Name	Value
Product	Dynactin p62
Orig transcript id	gnl\|cribi\|Naga_100065g15.7381.mrna
Orig protein id	gnl\|cribi\|Naga_100065g15.7381
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:446479..448559 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g15	gene8635	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8906	rna8906-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21790.1	cds8876	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:446479..448559+
coding sequence from alignment at KK037250.1:446479..448559+

mRNA sequence

>rna8906 ID=rna8906|Name=rna8906|organism=Nannochloropsis gaditana|type=mRNA|length=3834bp
CGGCCTTTGCTGTCATTTCTGCATCTGAATTGCCTCTGGTATTCGCCAGG
CAGCTGCAGCGCATTACCTGTAGCGCGCCTCATTGACAAGCTCGTGGATC
ACTATCGCAAGCAGATCTGGGAGGAGGTAGAAGGAGGAAAGCAGAAAGTA
CACAACATTTGTAGATCAAGTTCAGCCTCAACTCACTCACAGCACATGAA
TCTCCACTATGCTTTAGATTCGTTTTCCATCCTACGTTTCAACCGCCCGC
GCCCTCCATGAGGACAGCGGGAGCGGCAGGAGATCCTGTGATAGAGCCTT
CCTCCCCTTCACACTGCCTCCTGCCAACCCATCGGCACGAGCGCGGGGAT
ACAGCAGCACCATTTGATCCCTCCTTTCGGCTACCCACAGCAGTCATACA
TTTGGTACTCTCGTTTCTAAACGGAAGAGAGCTGTGCATTTGTGCCCAAG
TCTGCTGCGAGCTGTACGAGTGCTGTGACTACCCACCTTTGTGGGAGGGC
GCCGGCAGGGCAGCTTATCCACACGCGGAAAAGTTGGGCACGACCAACTT
ATACAGCGGAGAATGGAAGACACTATTGCGGGACAGGAACCGTCGGGATC
GCTCGGTGCTTTTTGAGTGGGAAGTCACGGATTGCCTCCGCAACACCAAC
CGGCGCTTCTCCCCCACGTTCACGTTGGGAGCCTACTCCTTCCAACTCAT
CGTCGATCCGAGTGGTAATCCTTACGTGCCGCTCGCAAAACCAGGCGTGT
CCGTCTACCTGACCTGTAGCCCCACTCAGTACATGCGTGGACTAGCCCCT
TCCGGTCGCATGTGTGTGGACCCGGCGGCCGACGAGATGCCGTATCTGAA
CCCCGCCGACAGCCGCGCGGAGGACGTGTGGGAATGCGCGGTCGCCTTCA
CCTTGGCCATTGTCAACCAGACGGGCGCACGTCGTGACCTGCCCTGGTCG
TCCAACCTTCTCCACGACCGATTCCGGCCTCATTGCCGGGAGTGGGGGGT
CCACAGGCTAGTTTCCTTGCGGCGACTGCAGGACTCTGCCAACGGATATT
TGAGCGAGACGGGGAGCATCAAAGTGGAAGCGTGCCTCCGGCTCGCCTGT
TTGTCTCTGAAAGTGTTTACCTCGGACGGAATGCGGGAATACGCTGGGTT
TGGGCTGGCGAATGTCCACGCCCCGGCCCCCGCCTTCTCGCGCGGAGGGA
CCCGTTCCTTCTTGCAGCCTCCCCCCCGGCCCAGGCACCTGGCCAGCACG
GACGCCTTCCCTCCATCCCCAGACACATACACGACCAGCTTGCTGACAAC
CACCACGGCCTTAGATCCTGTGTTGGCGGTGCCCCCCCTCCCTTCCTACG
CCGTGCTCCTCCCGGAGGCGGACGGTATGGAGGAAGAAATGGGGGAGGAG
TTGGGAGAGGAGTCGAAAGAGGAGGCATGGGGGATGGAGACAGGAGAGCC
AGTGAACTCCTCTCCTCCCTTTTCCCCCGAATGTACAGCAGACCGGCCCC
GCTCCAACCGTCCTTCTCCTTCCTGCCACCCCTTTCCCGCCTCCACGACG
CCCTTCTGGGGGTACGAGGTCTTCCAATGCATGACCGTTGCCGCTTTTCG
CGCCATTCTTGCCAAAGACCTCAATCTCTCTTCGCCCAACCACCTCCGTC
TCTGGATCGTGACCCAGCCCTGGGCGGATTCGCCGGCTGCCCCGCGCGAG
TTGATACGGACCGTTCCCCTACCCGATCACCCCGCCTTGCCCGACGACTT
CAATTACGAAGAGCTGCCTCTGTCCGTTCTGGAGGAGCACCAGACATTAG
CCATGGCCCTCGGTGCCCACATGGACTGCTTGGATGAGGTGCGGGTGTGG
GCGGAGGTGGCGGGGGACGGGGGACTAACGGTGGCGGAGGGAGGAAAGGA
GGGAGGGAGGGAGAAAGGGAAGGGGCCGAGCGGGAAGGCGTTGAAGACGT
TGGTGCCCGTGAGCAGGGAAGCGGAGCTGGACATATCCCCGCAGACGTTG
CGGATGCTCCCTGATCCGACGGATCCTGTTCAGTACATGGACGCGGTGGA
AGACCGGGGGGACGGAGGGTTCGGCCGTGGAGGGGACGGGGCGGTGGAGG
AGCAGGGAATTCCAGAGTCGGAGCCCGATCAGGGTGTCCTCGGTATGAGC
TCGGCATCAGCCGCGCAAGCACGCCAGATGCCTACTCGTGGTGGGGCCAC
GGGGGAGAAAGAGTTCGAAGGAGACGCCCGTGACGACCCAGGAGTCCCGT
GCGACACTACGGAATCGGGCCAAGACGTGGCTACGGCCCCTGCCTTGGAC
TCCTCCAGCCTTTCACCGTTGTCGGAGGGGGACAGCCAGATTGCTGCTGG
ATCCATGGCTCCGCCAGAATCGCCCACCTTCATCCTCCTCTTCTTTAAAC
GCCTGGTCCCCGCCTTTCCTGTGGGGCCTGGCAAGCTTGGGAGCTCTGCG
ATCCCGGCTACAGGCGCCTCTCTTGAATTCTCTTCTCACGCCTTGCTGCC
CATCGACACCCCCGTCCACGCCCTTTTCACGTTCATGGCCAGCGAGATGC
TTCCGCGGGGAGGAATGGGGAAGTCCGGTCAGACAAATGCGGAAAGGAAT
ATGTTGGCTACTGCCGATCCTGGCATCGCCCCCATGGTGTCGGGGAGTTC
AGCTGCGATGCTGCGGTGCTTGGTAGAGACGCCTCCGAACAATTGGCAGC
CCGCCTCAGCTGGATCTGAAAGAGCCAAGGGCCGAATTAGCAGTCTATGG
AGTGACAGGAAGGAAAACGGTTCCTTTATTTACATGGGCGACAACCGCTA
CGGGGGAAAAGATAAAGATAGCTTGCATGTCGAGCTGGGCGAGGCAGATT
CTCCGCGAGGCGAGCAGCTGGGGCGGGAGGAAGGGGCCCGCTCGGTCCGT
TTTCGGTGCCTGAACTACCATCCGACCAAGACCATTAGCGATTTGAGGCT
GGAGAACGGGCACATCCTCTCCTTTTTCCAGGCTGGACAGGAGGATTTGA
TCCAGCACGTGTACTGTTCCATGGCACAAAACCTGCTCCGAACTGCGGCA
GCCATTTACGACTGGACCGGTCCCTCTGCCAAAGTAGAAGAGACCCCCTG
CCCGATCAACGTTACGCTACATCAGCGGCATGATTACGTCCCAGGAAATT
TCCCACGCGTCTCTTCTCTTTCTACGGCCCCGTGGTTGGCACCTTGGCCG
TCGGCCATGTGCCTGCGCCCCCGGGGATCGCGACTTAGGCCACGCTTGAC
CCTCGAGACCGTCGTCGATCTTTTCGAAAAGGTAGGAAACCAACGTTTCC
GCGTTCGCAACACATTCTTTGAACAAGAGCACACAGTCGCCCGTCAGACA
TTGGACTACGGATATGGCCGCCACCTGGGCTTTTGCTGCGACCGATGTGG
AGAGTTAGATTTTACTGGCCCTCGTTACAAGTGCTGCGCGTGCCAAGACT
TTGACCTTTGCCATGATTGTCATCTGTTGCCTGTGGAAGGGCATCGATAC
CGCTTCAAGGGTCGGTCTTGGGCGCGGGAGGAATTTTCGGGTCACACTGA
CGCTCACGCCATGGTATGCCTGCAGCCCATTCCGTCCACATTAGCTATGC
TCCGTCGCTTTAGCGTCAAGAAATCTGCCGAGGTGTAATCAATCAATATG
GAGCATACGACGCTGCGTTCACCAGAGTGGGAAATTGTAACGTGCTAGAG
AACTCACGCTCTCACATCACGAAGATGCACCATATAGCCCGGCGTCATCG
AGAGTATGGGATACAAAGAAAAATTGGAGAGCGATACATCTATATCAGCA
CATAAATGAACATAACGGACATGACAATATAATG

protein sequence of rna8906

>rna8906-protein ID=rna8906-protein|Name=rna8906|organism=Nannochloropsis gaditana|type=polypeptide|length=632bp
MALNAERLLRPLFPSQNHDDRILDNDYGTNEGVSDVKVVFTDYQGWWAPL
THLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPR
CFDCPQCTSALLIISVDEESNHEENDAGYTFRCGYCRWSSADSIGLIEST
PEALIERLKKTELDDPQAVRYRALLQHLRQRAVAIARARRHHDRQYLLSA
PFALPTENELDSLGVGPVRARARWHLSDLEEKEDRGQAARTRATDGKETA
YLSTLLTEEKMGTKTAADACSFSAEDVDRAPASWVTLRTLSPRGPSSQTA
SRSLYPPLTSHSRPRRRPLCTKRVRRCRQDVEAGRPGILLKPKVNPLEGD
SSWTGTAGKWWQKDSSAIHVLPSVSVIRAQGLEKVFAGRARATGVTGGGG
QESDADARQWAKSHFAGTGDDPEALSFVLRLRNPLRGAVQVVLVPPPATS
EGAGATTELYYLRRLPVALGGDVNSSRNVGNVLYARVSCAGAEQAVAGEA
VDLEAFEDDLLEEEEEGEDQESLDALALRLLDGDTKMKREEGAQEVSATR
VLLRRKSRAWLHVKVPVPTAPLVLNKDAAVGVLLFLRFLSHRSELSNNRK
EPAFITVPVCLAFTRDSKSSDSCHDVDRCTKH

mRNA from alignment at KK037250.1:446479..448559+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8906 ID=rna8906|Name=rna8906|organism=Nannochloropsis gaditana|type=mRNA|length=2081bp|location=Sequence derived from alignment at KK037250.1:446479..448559+ (Nannochloropsis gaditana)
TATCTGTGTCTCATATCATGTTATGTAAGACCGACACCCTCAGCTTTGCC
TCATTTGGGGAACGTATTTATCAGTATGCTTCACTGTTCCATTCTCTGgg
ttctttttttctccctcgaaAGTTTTGGTGCCATTTCCCGAGAGGGGCGC
AGAGGACATGGCCTTGAATGCTGAACGGTTGCTGCGGCCACTATTTCCGT
CCCAAAATCACGATGATCGGATTTTAGACAACGACTATGGCACAAATGAG
GGTGTATCCGATGTAAAGGTCGTATTTACGGATTACCAAGGCTGGTGGGC
ACCTTTGACGCATTTGTTTTATAGCAATGCCTCCCAATGCCTCGTCAGCG
CGCACCCTGAAAGCAGTATAGAAGAAGTCGAGTCATTTTACTGCTCACAT
TGCCTGAACTACTTTGCTGACGCAGAAGCGGCAAGTTCTTACCATCGTTG
TCCTCGTTGCTTCGATTGTCCGCAGTGCACAAGTGCGCTTCTCATCATAT
CAGTCGACGAGGAAAGCAATCACGAAGAGAATGATGCAGGTTACACGTTT
CGGTGTGGATACTGTCGTTGGTCCTCCGCTGACTCAATTGGACTGATCGA
AAGCACTCCCGAGGCTTTGATAGAACGGTTAAAAAAGACAGAATTGGATG
ATCCCCAGGCAGTGCGGTATCGCGCCTTGTTGCAGCATCTTCGCCAACGG
GCCGTGGCGATAGCGCGGGCACGCCGACACCACGATCGACAGTACTTGCT
CTCTGCGCCCTTCGCACTGCCTACAGAAAACGAGCTGGACAGTCTCGGTG
TAGGCCCCGTTCGGGCGCGGGCGCGTTGGCATTTGTCggacttggaggag
aaggaagatcGCGGGCAAGCGGCCAGGACCCGCGCTACGGACGGCAAAGA
GACTGCCTATCTATCTACGTTACTCAcagaggaaaagatgggaaCGAAGA
CTGCAGCCGACGCctgctctttctccgccgaAGACGTGGACCGTGCCCCA
GCATCCTGGGTCACCCTGAGGACACTTTCCCCCCGTGGTCCGTCATCGCA
AACGGCCAGTCGCTCTCTATATCCCCCTTTGACAAGCCACTCACGACCTC
GGCGACGCCCCCTGTGCACCAAGCGGGTGCGTCGGTGTCGCCAAGACGTG
GAAGCGGGGAGACCAggcatcctcctcaagcCCAAGGTGAACCCATTGGA
GGGTGATTCATCCTGGACGGGCACGGCAGGAAAGTGGTGGCAGAAAGACT
CGAGCGCCATCCATGTGCTTCCTTCCGTGAGCGTCATCCGCGCCCAAGGA
CTAGAGAAGGTGTTtgcagggagggcgagagccACAGGGGTCacaggagg
cggtggacagGAAAGTGATGCTGACGCAAGACAATGGGCGAAGAGTCATT
TTGCTGGCACCGGAGACGATCCTGAGGCCCTCTCTTTTGTCTTGCGCCTG
CGCAACCCTCTACGGGGCGCGGTACAGGTCGTTCTCGTCCCACCTCCGGC
GACCTCCGAGGGCGCTGGTGCCACTACGGAGCTCTATTACCTGCGGCGCC
TGCCAGTGGCGCTTGGAGGCGATGTGAATAGCAGTAGAAATGTGGGCAAT
GTATTGTATGCCCGTGTATCTTGCGCGGGTGCTGAGCAGGCGGTCGCggg
cgaggcggtggacCTGGAGGCTTTCGAAGACGAtcttctggaggaggaag
aagagggtgaggaCCAAGAGTCGTTGGACGCCCTCGCCTTGCGTCTACTG
GATGGCGACACGAAGatgaagcgggaggagggcgcacAGGAGGTCTCAGC
CACACGAGTGCTCTTACGACGCAAGTCCCGTGCCTGGCTTCACGTGAAAG
TCCCGGTCCCAACGGCTCCCCTTGTCCTGAACAAGGACGCTGCGGTGGGG
GTTCTACTATTCTTACGATTCTTAAGTCATCGAAGTGAGTTAAGCAACAA
TCGTAAAGAGCCCGCATTTATAACTGTGCCCGTGTGCTTGGCGTTTACTC
GGGATAGTAAAAGTAGTGATTCTTGCCATGACGTGGACCGGTGTACGAAG
CATTGAAGCATAAGATAAATattgttcctcc

Coding sequence (CDS) from alignment at KK037250.1:446479..448559+

>rna8906 ID=rna8906|Name=rna8906|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at KK037250.1:446479..448559+ (Nannochloropsis gaditana)
ATGGCCTTGAATGCTGAACGGTTGCTGCGGCCACTATTTCCGTCCCAAAA
TCACGATGATCGGATTTTAGACAACGACTATGGCACAAATGAGGGTGTAT
CCGATGTAAAGGTCGTATTTACGGATTACCAAGGCTGGTGGGCACCTTTG
ACGCATTTGTTTTATAGCAATGCCTCCCAATGCCTCGTCAGCGCGCACCC
TGAAAGCAGTATAGAAGAAGTCGAGTCATTTTACTGCTCACATTGCCTGA
ACTACTTTGCTGACGCAGAAGCGGCAAGTTCTTACCATCGTTGTCCTCGT
TGCTTCGATTGTCCGCAGTGCACAAGTGCGCTTCTCATCATATCAGTCGA
CGAGGAAAGCAATCACGAAGAGAATGATGCAGGTTACACGTTTCGGTGTG
GATACTGTCGTTGGTCCTCCGCTGACTCAATTGGACTGATCGAAAGCACT
CCCGAGGCTTTGATAGAACGGTTAAAAAAGACAGAATTGGATGATCCCCA
GGCAGTGCGGTATCGCGCCTTGTTGCAGCATCTTCGCCAACGGGCCGTGG
CGATAGCGCGGGCACGCCGACACCACGATCGACAGTACTTGCTCTCTGCG
CCCTTCGCACTGCCTACAGAAAACGAGCTGGACAGTCTCGGTGTAGGCCC
CGTTCGGGCGCGGGCGCGTTGGCATTTGTCggacttggaggagaaggaag
atcGCGGGCAAGCGGCCAGGACCCGCGCTACGGACGGCAAAGAGACTGCC
TATCTATCTACGTTACTCAcagaggaaaagatgggaaCGAAGACTGCAGC
CGACGCctgctctttctccgccgaAGACGTGGACCGTGCCCCAGCATCCT
GGGTCACCCTGAGGACACTTTCCCCCCGTGGTCCGTCATCGCAAACGGCC
AGTCGCTCTCTATATCCCCCTTTGACAAGCCACTCACGACCTCGGCGACG
CCCCCTGTGCACCAAGCGGGTGCGTCGGTGTCGCCAAGACGTGGAAGCGG
GGAGACCAggcatcctcctcaagcCCAAGGTGAACCCATTGGAGGGTGAT
TCATCCTGGACGGGCACGGCAGGAAAGTGGTGGCAGAAAGACTCGAGCGC
CATCCATGTGCTTCCTTCCGTGAGCGTCATCCGCGCCCAAGGACTAGAGA
AGGTGTTtgcagggagggcgagagccACAGGGGTCacaggaggcggtgga
cagGAAAGTGATGCTGACGCAAGACAATGGGCGAAGAGTCATTTTGCTGG
CACCGGAGACGATCCTGAGGCCCTCTCTTTTGTCTTGCGCCTGCGCAACC
CTCTACGGGGCGCGGTACAGGTCGTTCTCGTCCCACCTCCGGCGACCTCC
GAGGGCGCTGGTGCCACTACGGAGCTCTATTACCTGCGGCGCCTGCCAGT
GGCGCTTGGAGGCGATGTGAATAGCAGTAGAAATGTGGGCAATGTATTGT
ATGCCCGTGTATCTTGCGCGGGTGCTGAGCAGGCGGTCGCgggcgaggcg
gtggacCTGGAGGCTTTCGAAGACGAtcttctggaggaggaagaagaggg
tgaggaCCAAGAGTCGTTGGACGCCCTCGCCTTGCGTCTACTGGATGGCG
ACACGAAGatgaagcgggaggagggcgcacAGGAGGTCTCAGCCACACGA
GTGCTCTTACGACGCAAGTCCCGTGCCTGGCTTCACGTGAAAGTCCCGGT
CCCAACGGCTCCCCTTGTCCTGAACAAGGACGCTGCGGTGGGGGTTCTAC
TATTCTTACGATTCTTAAGTCATCGAAGTGAGTTAAGCAACAATCGTAAA
GAGCCCGCATTTATAACTGTGCCCGTGTGCTTGGCGTTTACTCGGGATAG
TAAAAGTAGTGATTCTTGCCATGACGTGGACCGGTGTACGAAGCATTGA

Synonyms

Publications