rna890, rna890 (mRNA) Nannochloropsis gaditana

Overview
Namerna890
Unique Namerna890
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2143
Alignment locationCM002456.1:654841..655887 +

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Properties
Property NameValue
Productgun4 domain protein
Orig transcript idgnl|cribi|Naga_100017g86.305.mrna
Orig protein idgnl|cribi|Naga_100017g86.305
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:654841..655887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g86gene853Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna890rna890-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29807.1cds890Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna890 ID=rna890|Name=rna890|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp
CATCTCCAAGGGCCCACAACCCGTGCAAAGCTACATTAAATTTCGATGTG
GGGTATTCTCTCTGAAAGTTGCTCTCAAAGAAAGAAGCCACTTCTCTAAT
GTCACCGTTCAAGCGAAGTCAGGGTATTTGGATGCTGGATTGTAACCTCC
CGCCTTCGTGCGCGTTGAACTCACACACCAGTACTGTTTCTCATGTCAGA
AGGTTTAAACTTATGGCCGCGTTTAACAAATGTAGGGTGAAAAAACTCAT
CAATGATCCTAAAGATATCGTCGAGGAAGCGGTGGAAGGCATGTTGCTGA
GTCATCCCAAAACCTTGACCCGCCTGGAAGGCCTGCACGTCATCTTGCGC
ACTGATTTTGATGCACTGAAATCGAAGCAGATAGCGCTCATCTCAGGTGG
AGGAAGTGGTCATGAGCCAGCACACTGTGGCTTTGTTGCAGACGGAATGC
TTACCGCGGCTGTTCTTGGTGGTGTATTTGCCTCACCAAGTGTTGCGAGC
ATTTTGGCGGCCATCCGGGCGGTGACAGGGCCCAGGGGGTCTCTGCTCAT
CGTCAAGCGCTACACAGGCGATCTCCTTAACTTTGGCATGGCTCGCGAGC
AAGCACTGAGCGAGGGCATGCATGTTGAGATGGTGGTGGTGGCAGATGAC
TGCGCCTTGTCTCCAAGCAAGGGGATCACGGGCAGGCGGGGGGTCGCGGG
GACCGTACTGGTGCACAAGATAGCGGGTGCCGCCGCCGCCGCAGGATTAC
CGTTACTGGATGTTAAACGGGAGGCAGAGGAAGCGATCGCCAACATGGGC
AGTTTGGGCCTGGCCCTTTCTGTTTGCACGGTACCTGGTTCCGAGCCCTC
GGTGCGGTTAGACGGCGATACCATCGAGATGGGAATGGGGATCCACGGCG
AGGAGGGAATAGAGCGTATGCCTCTTTTTCCGGTCAACGCTTTGGTCGAG
CGAATGGTCCGCATAATCGTCAGCACTGAAGAGAAGGGAGGACATGGTTA
TCTTCCGTTGAGTCCACATCAAGACATCGCCTTGCTGGTAAACAACATGG
GAGCGACGCCTGCAATCGAGCTGAGCCTAGTAGTCCGGCGCGCGGTGAAG
GTACTGGAGGAGCCTCCTATCCTTGCTAGGGTCTGTCGGATCTTCGTGGG
ACCCTTCATGACCTCCCTTGAGATGGCCGGGGTGTCGATCACTATTCTTC
GGGTTCAGACTCAGACGTTGGCTCGATTGGATGCCTCCAGCACGGCGCCC
GGGTGGCTCTCGGCGGAAATACGAACCCCAGATGTAAAACGTGTCCCTGT
ACCTGTGCCCTTACCTCCCGAGATAGATGCCGGGTCCACGCGTGAACAAG
CCGCACACGGGCAACAGGTGCTTCCCTGCGATGTCTGGGCGCAGTATCTC
GCTTCAAGTCAGGCTGTCGCTCGCGCCTTAATTCAGGCCAAGCAGCAATT
GAATGACCTGGACGCCATTGGGGGGGATGGAGATTGCGGTATGACTCTGG
AGCGAGGAGCCAGGGCGGTTCTTTCTTTGTGTTCTAGCGAGTCAGGAATG
ACGCCGCCGCCTAATGCCTCTACATTCGTTACCTCTTTGGCGAATGCCGT
GAGCGACTCAATGGGTGGGACTTTTGGAGCACTTCTCGAAATTTTATTGC
GTGCTTTGGCGCGCTCCCTTATGGAACAGCATGCTTCAGTACCTGCGCCA
GGAGAATGGGCAACGGCCCTTCAACACGGCATAGAGCGGATGACTTTCTA
TGGAGGGGCCCGACCAGGGTACCGTACCATGTTGGACGCATTAATGCCCG
CAAGCGAGGCTTTGGTCGCCCGCGAAGGCTTGAAAAGAGCCGCAGAGGCA
GCTAGGGTAGGCGCGGAAAGAACGAAAAAGTTTGTGGCGTTGGCAGGGCG
TGCCAACTATGTGTCGCCCTCCGTGACACAAGGCCACAATGACCCGGGCG
CAGAAGCCGTGGCCATTGCCTTCGCGGCGATGAAGGAAGAATTGTAGAGT
GAGCAAGTGGAGCAATATCATTGAAAAACTTTGTGTGTTTCTTTAAAAAT
TAAAATTTATCAAATGCATGAAACTTCTTACCGAAGCTTGAAAGATGCAA
TTGTGGCACAGAAATTTGCAGACAAAAAATGGAGAAACTGATA
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protein sequence of rna890

>rna890-protein ID=rna890-protein|Name=rna890|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MRATKRVGASYLGLILLSSLHQVAAFSPLAVPGASSGMLSTHSRGTLKVK
PSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLI
GDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLK
YSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKS
EFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEEKKE
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mRNA from alignment at CM002456.1:654841..655887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna890 ID=rna890|Name=rna890|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp|location=Sequence derived from alignment at CM002456.1:654841..655887+ (Nannochloropsis gaditana)
ATGAGAGCAACGAAACGCGTGGGGGCTAGTTATCTGGGTCTCATTCTGTT
GTCGAGCCTGCACCAGGTCGCCGCCTTCAGTCCGCTTGCAGTGCCAGGGG
CTTCGAGTGGGATGCTTTCGACACATTCTCGCGGGACACTGAAGGTGAAG
CCGTCGCTGCCATGTAGAACGCTTCTATCTACAGTCTCGTAAGTGGTTGC
AAAAATTGTACGTGTCGACCAGTATGAAACAGTTGCCCGCGCATGGAGAC
CTCGCACGAGACAGTTCATTTGCCGTGCTTCTATTTCAGGGGGGAAGTCC
ACGGTCTTTCGGGGGGCAAAACATGGTCATTGACTTGAGGAGACATTTTA
TATATTCATTTCACCTGAAGACACTATGGATATTAGAACTTTTGCTGGCT
GTTCGGCATTTGAGGTTTCCGTAATCCGTGCTTCAATCCTTTGTCCAAAT
TCATTGACgtatttctctttctcttctgtTCACTAACTTTGTAGGGAATC
GACAGATGCGCCTTCGTCCAAAAAGACGGCACCCACAATGGAGAAAGATG
TGTTGAAGTCGGAGTGTGGGATGGACTACGTGCCCTTGGCCAACATGTTG
CTCATCGGCGACTTCAAAGGAGCGGACCAGTTTACGCGGGATGCCCTCAT
CCAGATAGCGGGGGAGAATGCGCGGAAACGGGGCTACGTGTATTTTACTG
AAGTGAAGGGTCTCCCGGAGGCTGACATGGCGACCATCGAGAAGCTTTGG
CTCAAGTACAGTAAAGGAAAGTTTGGGTACACGGTCCAACGCGCGATCTG
GAACCAAGTGACAGTTGGCAAGGATTTCGAGCGTTTTTGTCGGAAAATTG
GGTGGAATACGGTGGAGAACGGGATTGAACGCAAACTCAAGTGGTTTGGA
AAGTCAGAATTTATTTATGATTTGGAGAAAGCGCCGGTTGGTCATCTGCC
GCTGACTTCCGCGCTTCGGGGGACTTCTCTCCTGAAAAATCTGTTGACCT
ACCCCCTATGGGCTACCGAGTGgaacaaggaggaaaagaaagaataA
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Coding sequence (CDS) from alignment at CM002456.1:654841..655887+

>rna890 ID=rna890|Name=rna890|organism=Nannochloropsis gaditana|type=CDS|length=1482bp|location=Sequence derived from alignment at CM002456.1:654841..655887+ (Nannochloropsis gaditana)
ATGAGAGCAACGAAACGCGTGGGGGCTAGTTATCTGGGTCTCATTCTGTT
GTCGAGCCTGCACCAGGTCGCCGCCTTCAGTCCGCTTGCAGTGCCAGGGG
CTTCGAGTGGGATGCTTTCGACACATTCTCGCGGGACACTGAAGGTGAAG
CCGTCGCTGCCATGTAGAACGCTTCTATCTACAGTCTCGGAATCGACAGA
TGCGCCTTCGTCCAAAAAGACGGCACCCACAATGGAGAAAGATGTGTTGA
AGTCGGAGTGTGGGATGGACTACGTGCCCTTGGCCAACATGTTGCTCATC
GGCGACTTCAAAGGAGCGGACCAGTTTACGCGGGATGCCCTCATCCAGAT
AGCGGGGGAGAATGCGCGGAAACGGGGCTACGTGTATTTTACTGAAGTGA
AGGGTCTCCCGGAGGCTGACATGGCGACCATCGAGAAGCTTTGGCTCAAG
TACAGTAAAGGAAAGTTTGGGTACACGGTCCAACGCGCGATCTGGAACCA
AGTGACAGTTGGCAAGGATTTCGAGCGTTTTTGTCGGAAAATTGGGTGGA
ATACGGTGGAGAACGGGATTGAACGCAAACTCAAGTGGTTTGGAAAGTCA
GAATTTATTTATGATTTGGAGAAAGCGCCGGTTGGTCATCTGCCGCTGAC
TTCCGCGCTTCGGGGGACTTCTCTCCTGAAAAATCTGTTGACCTACCCCC
TATGGGCTACCGAGTGgaacaaggaggaaaagaaagaataAATGAGAGCA
ACGAAACGCGTGGGGGCTAGTTATCTGGGTCTCATTCTGTTGTCGAGCCT
GCACCAGGTCGCCGCCTTCAGTCCGCTTGCAGTGCCAGGGGCTTCGAGTG
GGATGCTTTCGACACATTCTCGCGGGACACTGAAGGTGAAGCCGTCGCTG
CCATGTAGAACGCTTCTATCTACAGTCTCGGAATCGACAGATGCGCCTTC
GTCCAAAAAGACGGCACCCACAATGGAGAAAGATGTGTTGAAGTCGGAGT
GTGGGATGGACTACGTGCCCTTGGCCAACATGTTGCTCATCGGCGACTTC
AAAGGAGCGGACCAGTTTACGCGGGATGCCCTCATCCAGATAGCGGGGGA
GAATGCGCGGAAACGGGGCTACGTGTATTTTACTGAAGTGAAGGGTCTCC
CGGAGGCTGACATGGCGACCATCGAGAAGCTTTGGCTCAAGTACAGTAAA
GGAAAGTTTGGGTACACGGTCCAACGCGCGATCTGGAACCAAGTGACAGT
TGGCAAGGATTTCGAGCGTTTTTGTCGGAAAATTGGGTGGAATACGGTGG
AGAACGGGATTGAACGCAAACTCAAGTGGTTTGGAAAGTCAGAATTTATT
TATGATTTGGAGAAAGCGCCGGTTGGTCATCTGCCGCTGACTTCCGCGCT
TCGGGGGACTTCTCTCCTGAAAAATCTGTTGACCTACCCCCTATGGGCTA
CCGAGTGgaacaaggaggaaaagaaagaataA
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Synonyms
Publications