EWM29807.1, cds890 (CDS) Nannochloropsis gaditana

Overview
NameEWM29807.1
Unique Namecds890
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:654841..655028 +
Alignment locationCM002456.1:655335..655887 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29807.1
Productgun4 domain protein
Orig transcript idgnl|cribi|Naga_100017g86.305.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:654841..655028 +
CM002456.1supercontigCM002456.1:655335..655887 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR008629GUN4-like
Homology
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|585112388|gb|EWM29807.1| (gun4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 507.679 bits (1306), Expect = 0.000e+0
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MRATKRVGASYLGLILLSSLHQVAAFSPLAVPGASSGMLSTHSRGTLKVKPSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEEKKE 246
            MRATKRVGASYLGLILLSSLHQVAAFSPLAVPGASSGMLSTHSRGTLKVKPSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEEKKE
Sbjct:    1 MRATKRVGASYLGLILLSSLHQVAAFSPLAVPGASSGMLSTHSRGTLKVKPSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEEKKE 246          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|1210516797|dbj|GAX24286.1| (hypothetical protein FisN_4Lh011 [Fistulifera solaris])

HSP 1 Score: 228.409 bits (581), Expect = 5.520e-72
Identity = 117/213 (54.93%), Postives = 150/213 (70.42%), Query Frame = 0
Query:   34 ASSGMLSTHSRGTLKVKPS-LPCRTLLSTVSESTDAP--SSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATE-WNKE 242
            ASS ++S  +  +L  +P+ + CR++ +T   +  A   SS + A       L S CGMDYVPLA ML  GD   ADQFTRDALI+I+G  A+ R +VYFT+VK +P  D+AT+E+LW K+SKGKFGY+VQ+  WNQ     DFE FCRKIGW T +  +ERK +WFG SEFIYD++KAP GHLPLTSALRGTSL+K+LL +P+W  E W KE
Sbjct:   15 ASSSLVSAFTTPSLVARPTGVVCRSMTATAEATPAAEEASSSEDADIQIPTNLPSACGMDYVPLATMLATGDLVAADQFTRDALIEISGAKAKGRNFVYFTDVKNIPSIDLATMERLWNKFSKGKFGYSVQKKKWNQSK--GDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNEDWKKE 225          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|1210512492|dbj|GAX28349.1| (hypothetical protein FisN_4Hh011 [Fistulifera solaris])

HSP 1 Score: 224.557 bits (571), Expect = 1.692e-70
Identity = 115/214 (53.74%), Postives = 150/214 (70.09%), Query Frame = 0
Query:   34 ASSGMLSTHSRGTLKVKP-SLPCRTLLSTVSESTDAPSSKKTAPTMEKDV---LKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATE-WNKE 242
            ASS ++S  +  +   +P S+ CR + +T   ++ A  +  ++   E  +   L S CGMDYVPLA ML  GD   ADQFTRDALI+I+G  A+ R +VYFT+VK +P  D+AT+E+LW K+SKGKFGY+VQ+  WNQ     DFE FCRKIGW T +  +ERK +WFG SEFIYD++KAP GHLPLTSALRGTSL+K+LL +P+W  E W KE
Sbjct:   15 ASSSLVSAFTTPSFAARPTSVVCRPMTATAEATSAAEEAASSSEDAEIQIPTNLPSACGMDYVPLATMLATGDLVAADQFTRDALIEISGAKAKGRNFVYFTDVKNIPSTDLATMERLWNKFSKGKFGYSVQKKKWNQSK--GDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNEDWKKE 226          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|873229245|emb|CEM13675.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 207.608 bits (527), Expect = 2.722e-63
Identity = 116/252 (46.03%), Postives = 154/252 (61.11%), Query Frame = 0
Query:   12 LGLILLSSLHQVAAFSPLAVPGASSGMLSTHSRGTLKVKPSLPCRTLLSTVSESTDAPSS----------------KKTAPTME----KDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEE 243
            +G+ L ++  Q+ + S L+     S   ST SR  L+     P    LS  S  TDAP S                 KT   +E     + L SE G DY PLA ML   DFK ADQFTRD LI++AG  A+ R YVYFTEV+ +P  DMATIE+LWL YS G+FGY+VQ+ +W   T   DF+ FC K+GW+ +E+GIER  +WFG++EF+YDL+KAP GHLPLT+ LRGT+L K +L +P W ++  +E+
Sbjct:   19 IGIYLCAAFQQLPSPSLLS---RRSPFSSTLSR--LRTA-RFPSSVALSASSTVTDAPPSIAPSAIESSPLPDLEPSKTDAVVEVASIPEHLPSEAGKDYRPLACMLAKQDFKEADQFTRDMLIELAGPGAQMRKYVYFTEVRKIPVTDMATIERLWLHYSNGRFGYSVQKKVWK--TCRADFQTFCSKVGWSKMEDGIERLRRWFGENEFMYDLDKAPRGHLPLTNTLRGTTLFKEVLNHPAWDSDVLQEK 262          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|397567193|gb|EJK45449.1| (hypothetical protein THAOC_35937 [Thalassiosira oceanica])

HSP 1 Score: 206.068 bits (523), Expect = 3.359e-63
Identity = 108/203 (53.20%), Postives = 137/203 (67.49%), Query Frame = 0
Query:   52 SLPCRTLLST------VSESTDAPSSKKTAPTMEKDV-----LKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWAT-EWNKE 242
            ++PC T+LS       +++S   P+S      +E DV     L S+ GMDY+PLA ML  G    ADQFTRDALI IAG   + R +VYFTEVK +P  D+ATIE+LW K+S GKFGY+VQ+  + Q     DFE FC+KIGW T E  +ERK +WFG SEF YD++KAP GHLPLTSALRGTSL+K LL +P+W   +W K+
Sbjct:   28 NVPC-TILSEAATAEKMADSGKPPASSGPDANIE-DVEIPTNLPSDVGMDYIPLATMLATGQLAEADQFTRDALIVIAGSKDKGRDFVYFTEVKDIPSTDLATIERLWNKFSGGKFGYSVQKKKFRQSKF--DFEVFCKKIGWTTTEGDVERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKELLAHPVWDNDDWKKD 226          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|1072229306|gb|OEU14041.1| (GUN4-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 203.756 bits (517), Expect = 3.788e-63
Identity = 100/166 (60.24%), Postives = 127/166 (76.51%), Query Frame = 0
Query:   83 LKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGK-DFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWAT-EWNKEEKKE 246
            L S+ GMDY+PLA ML  G F+ ADQFTRDALI I+G     R +VYFT+VK +P  D+ATIE+LW K+SKGKFGYTVQ+    Q+ + K DFE FC KIGW T+++ +ERK +WFG SEFIY+++KAP GHLPLTSALRGTSLLK LL +P++   +W KE +K+
Sbjct:    6 LPSDVGMDYIPLATMLATGQFEEADQFTRDALITISGAKDLGREFVYFTDVKRIPNTDLATIERLWNKFSKGKFGYTVQK---KQMRLAKGDFETFCTKIGWTTMDDDVERKRRWFGTSEFIYNVKKAPKGHLPLTSALRGTSLLKKLLDHPVFENDDWKKEPEKK 168          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|224007735|ref|XP_002292827.1| (hypothetical protein THAPSDRAFT_263658, partial [Thalassiosira pseudonana CCMP1335] >gi|220971689|gb|EED90023.1| hypothetical protein THAPSDRAFT_263658, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 202.986 bits (515), Expect = 4.984e-63
Identity = 96/153 (62.75%), Postives = 115/153 (75.16%), Query Frame = 0
Query:   83 LKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLW 235
            L S+ GMDYVPLA ML  G    ADQFTRDALI +AG  A+ R +VYFTEVK +P  D+ATIE+LW K+S GKFGY+VQ+ IW +     DFE +C KIGW T +  IERK +WFG SEF YD++KAP GHLPLTSALRGTSL+K LL +P+W
Sbjct:    1 LPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKAKGRDFVYFTEVKNIPSTDLATIERLWTKFSGGKFGYSVQKQIWKKSK--GDFEVWCNKIGWTTKDGEIERKKRWFGASEFTYDVKKAPKGHLPLTSALRGTSLIKELLNHPVW 151          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|676394639|ref|XP_009040597.1| (hypothetical protein AURANDRAFT_55095 [Aureococcus anophagefferens] >gi|323448789|gb|EGB04683.1| hypothetical protein AURANDRAFT_55095 [Aureococcus anophagefferens])

HSP 1 Score: 188.734 bits (478), Expect = 2.494e-56
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 0
Query:   70 SSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWN-QVTVGKDFERFCRKIGWNTVE--NGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWAT-EWNKE 242
            S+   AP ++ + L S  G+DY PL   L IGD+  ADQ TRD LI++AGE A KRGYVY+TE + LP  D+AT+E LWL YS GKFGYTVQ+ +W  Q  V   F+ FC KIGW T +   G  RK +WFG SEF Y L+KAP  HLPLTSALRGT LLK LL + +W T EW ++
Sbjct:   47 STLARAP-LDPNCLVSAKGIDYEPLMEQLRIGDYMAADQTTRDVLIEMAGEEAMKRGYVYWTEARQLPNEDLATVENLWLHYSDGKFGYTVQKNVWRLQKGV---FDNFCDKIGWTTTDEITGQPRKRRWFGDSEFFYSLDKAPKAHLPLTSALRGTQLLKALLQHQVWETEEWKRD 219          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|676393553|ref|XP_009040054.1| (hypothetical protein AURANDRAFT_14567, partial [Aureococcus anophagefferens] >gi|323449263|gb|EGB05152.1| hypothetical protein AURANDRAFT_14567, partial [Aureococcus anophagefferens])

HSP 1 Score: 178.333 bits (451), Expect = 2.262e-53
Identity = 88/151 (58.28%), Postives = 108/151 (71.52%), Query Frame = 0
Query:   85 SECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWN-QVTVGKDFERFCRKIGWNTVEN--GIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTY 232
            S  G+DY PL   L +GD++ ADQ TRD LI++AGE A KRGYVY+TE + LP+ D+AT+E LWL YS GKFGYTVQ+ +W  Q  V   F++FC KIGW T++   G  RK +WFG SEF Y L+ AP  HLPLTSALRGT LLK LL +
Sbjct:    1 SAKGIDYEPLMEQLRVGDYRMADQTTRDVLIEMAGEEAMKRGYVYWTEARQLPDEDLATVENLWLHYSDGKFGYTVQKNVWRLQKGV---FDKFCDKIGWTTIDEVTGQARKRRWFGDSEFSYKLDDAPKAHLPLTSALRGTQLLKALLQH 148          
BLAST of EWM29807.1 vs. NCBI_GenBank
Match: gi|922853196|gb|KOO21828.1| (tetrapyrrole-binding protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 177.178 bits (448), Expect = 5.325e-52
Identity = 95/203 (46.80%), Postives = 121/203 (59.61%), Query Frame = 0
Query:   34 ASSGMLS-THSRGTLKVKPSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLW 235
            A + MLS   + G +    ++P RT  +  +           AP +E+  +++ CG DYVPL   L  G+F+ ADQ TRDALI +AG+ A  RGYVYFTEV  LP  DMATIE+LW  YS GKFGY VQ   +    V ++FE F  +IGW   +  + R L      EFIYD++KAP GHLPLTS LRG  LLK LLT+  W
Sbjct:    5 AVAAMLSLAFAPGQVGRVATVPLRTRPALCATEAPEAPEAPEAPMVERPKIETTCGFDYVPLLTALQAGEFREADQLTRDALITLAGDKAVDRGYVYFTEVPNLPVEDMATIERLWQAYSGGKFGYAVQAQAYMSKKVNRNFETFFERIGWKKADGTLVRWLPEAKNDEFIYDVDKAPKGHLPLTSTLRGQQLLKGLLTHKAW 207          
The following BLAST results are available for this feature:
BLAST of EWM29807.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112388|gb|EWM29807.1|0.000e+0100.00gun4 domain protein [Nannochloropsis gaditana][more]
gi|1210516797|dbj|GAX24286.1|5.520e-7254.93hypothetical protein FisN_4Lh011 [Fistulifera sola... [more]
gi|1210512492|dbj|GAX28349.1|1.692e-7053.74hypothetical protein FisN_4Hh011 [Fistulifera sola... [more]
gi|873229245|emb|CEM13675.1|2.722e-6346.03unnamed protein product [Vitrella brassicaformis C... [more]
gi|397567193|gb|EJK45449.1|3.359e-6353.20hypothetical protein THAOC_35937 [Thalassiosira oc... [more]
gi|1072229306|gb|OEU14041.1|3.788e-6360.24GUN4-like protein [Fragilariopsis cylindrus CCMP11... [more]
gi|224007735|ref|XP_002292827.1|4.984e-6362.75hypothetical protein THAPSDRAFT_263658, partial [T... [more]
gi|676394639|ref|XP_009040597.1|2.494e-5655.37hypothetical protein AURANDRAFT_55095 [Aureococcus... [more]
gi|676393553|ref|XP_009040054.1|2.262e-5358.28hypothetical protein AURANDRAFT_14567, partial [Au... [more]
gi|922853196|gb|KOO21828.1|5.325e-5246.80tetrapyrrole-binding protein [Chrysochromulina sp.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna890rna890Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications