rna8894, rna8894 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8894
Unique Name	rna8894
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1662
Alignment location	KK037250.1:411996..412783 -

Link to JBrowse

Properties


Property Name	Value
Product	lysophospholipase ii
Orig transcript id	gnl\|cribi\|Naga_100065g28.7393.mrna
Orig protein id	gnl\|cribi\|Naga_100065g28.7393
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:411996..412783 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g28	gene8624	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21802.1	cds8864	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8894	rna8894-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:411996..412783-
coding sequence from alignment at KK037250.1:411996..412783-

mRNA sequence

>rna8894 ID=rna8894|Name=rna8894|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp
AGCACAGAGCGAGCGGACGCGCTTATTCGGTCGTTGCGGTCCAGCACTTT
GATTGCGCTCACGGACAGATAACCAGGTAAAGGCGGGGAATTTGTACGAA
TCATCACATCTATTTTACCTGTATTCTACTTTTGATTCTATTGGGATCAG
TAATGGGACTGCAATCACTTTTGTGTACTTTTGTCCCGGTGCTTTTCATG
ATTCTCTTTGTCTTCCTACCGAGGGGCAGGCCCCCACTGCAGACGAGCTG
AAGTTGACGAAGGACACCTCAACGTGAGTCCGGGCACGTGCTCTGAGTGG
TATCTATTCAACCATTCTTTCCAACTATAAATTTTGAGCACACAGTCTGA
GGCCATTACGATCTTTGGGTAAGATTTCCATCTTTACTTTAAAAAGATTC
TGCGGGATCCGTCTTTCAGCCCTCGACTCCGACGACCATTATGGCCAGCA
AAGTCTCACTAGCGGCAGCAAAGGTGGCAAGCAATAAAGCTGCTCTACAG
CGTGTGACATCCGACTTGATCGCATCACCAATTGCATACTTTGCGCGGAC
AAGTCATTTTGATCCAAGTGCCAGGGTCCATGCAGGATTGCGATTCCAAA
GCACATACGCAAAAGCTAGCACAAATCTCACGGCCCCAAAAATGACGACT
TCATGGTTGAGCGCCCTTTTTGGTGGAGGTAACTCGAAATCCAAAGCACA
TCGACCATTTGGCCGGCACGAGGAAGCGCACCTAAGATTGGCAACGCGCA
AGACGAACAAAATCCTGAAGGCCAACCCGGGGGCACGTGTCGAGCCTAAA
TTTCTATCGGAGGAGGACGCACAAATGCTCGTCGAGGAAGCTATGGACAT
TATAAATATCTACGGGATGTCGCATGTCAGCGAGGAGCAACGGGACGTCC
TGGCCAACCAACTGAAGCATTTTCCTCTGCCGAAGGAGGACCTCAGGGCT
CTCGTCAACATGCAGCGAGTGACAGGGCGATTTGAAGACGAGGCTCAGAA
ATTGGCCCCCTGGGGGTACGGCGATGACTTCCAAGTCGACCAAGTCCCGC
CAGCACTGCGCAAAGTTCTCGAAAGCATCCAAGATTCGCCGCATTTCTGT
GTGGGTAAACCGAGGGACATCACCATCAACCGGCGCGAGAAATCATTCTA
CCGCCTAGATCCGCACATTGACCCCGCAAAGGACGGCGGCAATGTCTTTA
TACTCAGCCTTCTTTCTGGGACCGTCATGACGCTCACGCCCACGTCCCGG
ACCATGCATCCGGACCAGCACAAGGCGATGGACACGAGGAAGGTGGCCGA
GGTTTCCTGGCTGCCGGGAAAGGATATCGATGTGGATTTACCTGTGCTGT
CCCTGCTGCACCTGAGCGGAGACGCTCGCTACACGTGGTGCCACGGAATA
CGCCCAGGGGTAACGCAGTCTCAGATCAGCGATTTCAATCTGGGGGGGGT
GATGTCAGACGAGATGGAGGGAGTCGACCAGGAGGCTGTGAGGACGCTGG
AGGGGTTGCCACTCTGGGATTGGTGGGGTTCTATGAAAAATTTGCGGCGT
CGAGGCCCGGAGCGTGTGAGCATCATTTGTGCGTTCGCAGACCCAGAATG
AGGTAGCAAGGAGGTCGCGGTAAATTTTGAGGGGAAAATGAAGACGATTT
TGTAGCTCTTGC

protein sequence of rna8894

>rna8894-protein ID=rna8894-protein|Name=rna8894|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MSLPLPWSARRAICLSVSSILATAKSTAFAYPTSTFSADTRTRGLAVMTH
RASRNDNVGGAGITLNPVGGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPT
TRMIFPTAPTRPITLNGGFPMPGWFDINGLDESSPEDRAGFEEAKQRIAR
IVQGEVEAGVPADKIVLGGFSQGGAVTLHLALRSEVRLGGAVILSGWLPL
KADYPAALTEVGKAMPYFHG

mRNA from alignment at KK037250.1:411996..412783-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8894 ID=rna8894|Name=rna8894|organism=Nannochloropsis gaditana|type=mRNA|length=788bp|location=Sequence derived from alignment at KK037250.1:411996..412783- (Nannochloropsis gaditana)
TATGCTCCCAGTCGTCACTTTATTCCATTACATGTCATGCACGTGTTGTT
GCGTGTCATGTCCCGAACTTACTGGAGTCTGCACAACATCTGAAAATTGA
CAGGGTGTCCTTTACCTCTTTCTTAGTGCATGAGCCTCCCCTTGCCCTGG
AGCGCCCGCCGTGCTATCTGCCTCTCTGTCTCCAGCATCTTGGCCACAGC
GAAAAGTACCGCTTTTGCGTACCCGACAAGCACTTTTTCTGCCGATACAC
GTACGCGCGGGCTCGCTGTCATGACCCACAGAGCGTCTCGTAACGATAAC
GTTGGCGGGGCTGGTATAACCCTCAACCCTGTAGGCGGGCCTGCTCAATC
CTCCATCATTTGGATGCACGGCCTAGGCGACTCCGGCGAAGGGTGGGCCG
GGGCCTTTGATCCTAAAGTATTCCCCACCACCCGCATGATCTTTCCCACC
GCACCTACTCGGCCCATCACCTTAAATGGAGGCTTTCCGATGCCGGGATG
GTTTGACATCAATGGTCTGGATGAAAGCAGTCCGGAAGACAGAGCGGGCT
TTGAAGAGGCCAAGCAACGCATCGCACGAATAGTGCAAGGGGAAGTCGAG
GCAGGCGTGCCGGCAGATAAGATTGTCTTGGGAGGCTTTTCGCAAGGAGG
GGCTGTCACGCTGCACTTAGCCCTGAGAAGCGAGGTTCGATTGGGCGGGG
CTGTCATTTTATCCGGATGGTTGCCACTTAAGGCGGACTACCCTGCTGCC
TTGACGGAAGTTGGGAAAGCCATGCCATACTTCCACGG

Coding sequence (CDS) from alignment at KK037250.1:411996..412783-

>rna8894 ID=rna8894|Name=rna8894|organism=Nannochloropsis gaditana|type=CDS|length=659bp|location=Sequence derived from alignment at KK037250.1:411996..412783- (Nannochloropsis gaditana)
ATGAGCCTCCCCTTGCCCTGGAGCGCCCGCCGTGCTATCTGCCTCTCTGT
CTCCAGCATCTTGGCCACAGCGAAAAGTACCGCTTTTGCGTACCCGACAA
GCACTTTTTCTGCCGATACACGTACGCGCGGGCTCGCTGTCATGACCCAC
AGAGCGTCTCGTAACGATAACGTTGGCGGGGCTGGTATAACCCTCAACCC
TGTAGGCGGGCCTGCTCAATCCTCCATCATTTGGATGCACGGCCTAGGCG
ACTCCGGCGAAGGGTGGGCCGGGGCCTTTGATCCTAAAGTATTCCCCACC
ACCCGCATGATCTTTCCCACCGCACCTACTCGGCCCATCACCTTAAATGG
AGGCTTTCCGATGCCGGGATGGTTTGACATCAATGGTCTGGATGAAAGCA
GTCCGGAAGACAGAGCGGGCTTTGAAGAGGCCAAGCAACGCATCGCACGA
ATAGTGCAAGGGGAAGTCGAGGCAGGCGTGCCGGCAGATAAGATTGTCTT
GGGAGGCTTTTCGCAAGGAGGGGCTGTCACGCTGCACTTAGCCCTGAGAA
GCGAGGTTCGATTGGGCGGGGCTGTCATTTTATCCGGATGGTTGCCACTT
AAGGCGGACTACCCTGCTGCCTTGACGGAAGTTGGGAAAGCCATGCCATA
CTTCCACGG

Synonyms

Publications