rna8893, rna8893 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8893
Unique Name	rna8893
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2967
Alignment location	KK037250.1:409828..411638 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100399g5.1189.mrna
Orig protein id	gnl\|cribi\|Naga_100399g5.1189
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:409828..411638 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100399g5	gene8623	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8893	rna8893-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21811.1	cds8863	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:409828..411638+
coding sequence from alignment at KK037250.1:409828..411638+

mRNA sequence

>rna8893 ID=rna8893|Name=rna8893|organism=Nannochloropsis gaditana|type=mRNA|length=2967bp
CCACAGGCAATCTCCCTAGAAGCCCTGCACTGCGGCCCATGGCCACCTAG
GAACGGTTGCCAAACGGGGCAATCTGGTCAGACTTGCCAAATCGAGCCTG
CCGCTCTCAAGATATCTGTCCTATTTAATTAAAAGAATCTCTGAGCAAGA
CCATGGACCTCTTTCAAGAGGAAGAGATGAATTGCGCGCCCTCCGCCGAG
TTTCTCATGTCCTACGGCCAAATTCCTATCAGCGAGGAGGCAGGGCGAGT
GTCTCGACTATCGAGCTGGACCCTTCCGGGCGCCAAATCAACCAAGCACT
CTTATGCACATGTTTCAGGTGCAGGTACTTTGACTCAAGCAACTGCATTG
GCAGCGGTACGAATGGAGGATCAAAGCAGCCCTCTTGCTGTAGATGGTAT
CGCCTGCAGCCTTAACGACCGCAAAGATGGAAGGCAGGACTTAGGGACCG
TCCCAGAAGCTCTCTCAGACGGCAACACAAATTCTTTAATAACATCCTTT
CCTGCTAAGACTCCAACTTCCTGTCTGGGTCAGCATGAAGAGAGAGCCAG
GGCAAAATTTGGCCATTTAGCAGCCCCAGAAAGTTCTATTGACAAAGTTA
TGGCGGAGCCAGACAAGACAGCGGTCTCATTATCTAAGACATCAAAGACC
ATTACACCCCTTGCAAATTCACCGACGGGATCTTTCCAAGAAATCATTCC
AGGATCGCAACGTTTGGGCGACCCTTCCCTGTTTCGGCCTCCCTCAGAAG
TCGCCTGTCCTGCTTTCAAACCCGCCAAAATCCTGTCCAGACGTTCCAGC
GCAAAAGATGCGAATGCACAATATCCTTCCAATCTTTCAGCACTGCAGCC
CCATCAAGACGTGGAGAAAGTGGAAACGTCGACCAGACGGAACCACGGCC
GTAAAGATCAACGGAAAGCCATGCAAAGGGTGCGCGCCGAGGTGCTACGC
ATCTTGGACTCCGACACCGGAGAGAGTCCGCCCTTTATTGACTACAAGAA
GACTGGGAGTGAGGAAAATATAAGCTCAGATAAGGACACCAGGGGAGAGA
AAGAGAGCGACCTGATCGCCGGGCAAGAGCGCTCTTCCCTGTTGCTTTCT
TCGACCCTCTCCCTCCAGTCAGAGCAAAAATTAGTAGACGCAGCTAGCGT
GTGGGGCGCTGGTGGGAATCCGCCTTCTTCGTCTTTTTCTTCTTTTGCTG
CGTTACATTCCTTGGAAGGCAGCCGCGCGAACCAGCTCGGCGCCACCTCT
GCAGTGCCCAGCGCCTCACCGTGGGGTCCCCCGCTCGTGTTTACGCCCGT
CCAGCCCGATGGGCCCACCGCAAGCTCCTCCACGACGAACCAAGAAAGTG
ACAAGATCCAAGCCAAAAACGCAAGCGAGGGCCCGCGTGGGCTCGACGGG
CTGATGGAAGGCCTCACTCGGGTGGTGCTGGACCCCGGCTCCTGCCAGAC
CAGTAAGGTCCTTCCCAAGTCGTCATTGGCGCCTTCATTCTGTCGCCCCA
CTGCACCCACACGCCCGCCCCCGCCTCTTACGGCTGATACTTCCGAAAAG
GAGTCGGCCTCGGCTGCCATCCCCCAGGAGGAGATTCCTGCCCTGGCAGC
AGGCGCATTGCACGACGGGGCCGGGGGCCAGGATGCGCGTCCCTCCGGCG
GTCAGTCACAGGAGGAAGAAGAGCCCGCCTCGCCACACAGAAGACGCAGG
ACCCGGCGGGGGCGTCGGGGTCAAGGGCGTCGAAAGCGAGCGGCGGAGGC
ACGGCTGGCCCGGCGCTTGGGTCTACCTTTGGACCTGGAGGAGGGCTTTT
CGCAAGGCGGACAAGAAGACGTTTTCATGTACTCGCCGTCCCATAAACGG
GAGGACTTGCCTCTCCTCACTCACGATCTGACCGCGCCCCTTCCGGCCAC
CGCGATGCTGACAACATTGCTCGATTCCAGGCGTCACTATCCAAACACTC
CAACCGTCACATACGGCCCGCAACAGGAAGAGCACATCCCCGGCCGCCCC
CCCCGGAATCCTCCCTTGGTCTCCACGTCCCGCCCCCGGTTACCTCCCGA
TTCTTACGCCCACGCGCCTCTTCACCAGCCGCAACGACCCGGCAGCCTTG
CTTGCCAGTCGCTGCGCATGGGTTGCGCCGGGTCAACGCTCTCAGGCCGC
CAGTATTTGGACACTGAGGACGCCATCGTCCCTGCCACTGAGGGCAAATC
TATGGCGCACCTTCTCCGGGATGGCTGGTACCCGCCGATGGCATCTTCGC
GCTTGCCTGCACCTTCTCGGCCCCGTGCATCGGACTCCGTAAACGCATCT
CTTGACTTGCCTGTGTCGGCGGGCTATCCACCAGGGCGGGGTTTAGACGT
GCGCCGTGCGTATGCATAAACACAAGCATCGACATGAAGACGGAGACGGG
CAGAGAGGCACGCTTAAGAAGGGACACGGGATCGCACAAATAGCATCTGG
AAAGGAAGAGAGATAACGAACCATTTGAGAAGCGTGGAGGCGGTGTATTA
CTTATTACATTACTCCAGATATGTTTCGTTGCGGTCAGATCAAAACATTA
GGAAATAGGAGCCCAACGACCAGGTCATGCTATGACTATGGTGAAAGGCG
TGGTAAGACGGTGGGCTTAGGCCAGATTAGTAAACATAGAGGCATACACA
TCTGCATAAAAAGCACAAGAACCTTGGCTGAACCAACAGACAAGGACATG
CGCCGAAAGAAAGGCAGACTTCTTGATTGGCAATAAGCAATAATCTTTCA
CACAAAGAATGGGCAGCACTTTATGTCATCATTCTATACTTCAATAAGGA
ATGCCCTCACCGGCATGCAGAGAAATAGAAGGAGGGCGGTGCGTGAAAAT
TGTGTGCCAACGCATACCGAATTTATTTGGCGCGTTTCAAGTAACGACGC
CCTCGGCACTTACTGATTGCTTGCCAATCATTTCCGAAGAAAAATAAGAA
AAGAGAAGAACCCCTAA

protein sequence of rna8893

>rna8893-protein ID=rna8893-protein|Name=rna8893|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MASKVSLAAAKVASNKAALQRVTSDLIASPIAYFARTSHFDPSARVHAGL
RFQSTYAKASTNLTAPKMTTSWLSALFGGGNSKSKAHRPFGRHEEAHLRL
ATRKTNKILKANPGARVEPKFLSEEDAQMLVEEAMDIINIYGMSHVSEEQ
RDVLANQLKHFPLPKEDLRALVNMQRVTGRFEDEAQKLAPWGYGDDFQVD
QVPPALRKVLESIQDSPHFCVGKPRDITINRREKSFYRLDPHIDPAKDGG
NVFILSLLSGTVMTLTPTSRTMHPDQHKAMDTRKVAEVSWLPGKDIDVDL
PVLSLLHLSGDARYTWCHGIRPGVTQSQISDFNLGGVMSDEMEGVDQEAV
RTLEGLPLWDWWGSMKNLRRRGPERVSIICAFADPE

mRNA from alignment at KK037250.1:409828..411638+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8893 ID=rna8893|Name=rna8893|organism=Nannochloropsis gaditana|type=mRNA|length=1811bp|location=Sequence derived from alignment at KK037250.1:409828..411638+ (Nannochloropsis gaditana)
AGCACAGAGCGAGCGGACGCGCTTATTCGGTCGTTGCGGTCCAGCACTTT
GATTGCGCTCACGGACAGATAACCAGGTAAAGGCGGGGAATTTGTACGAA
TCATCACATCTATTTTACCTGTATTCTACTTTTGATTCTATTGGGATCAG
TAATGGGACTGCAATCACTTTTGTGTACTTTTGTCCCGGTGCTTTTCATG
AttctctttgtcttcctACCGAGGGGCAGGCCCCCACTGCAGACGAGCTG
AAGTTGACGAAGGACACCTCAACGTGAGTCCGGGCACGTGCTCTGAGTGG
TATCTATTCAACCATTCTTTCCAACTATAAATTTTGAGCACACAGTCTGA
GGCCATTACGATCTTTGGGTAAGATTTCCATCTTTACTTTAAAAAGATTC
TGCGGGATCCGTCTTTCAGCCCTCGACTCCGACGACCATTATGGCCAGCA
AAGTCTCACTAGCGGCAGCAAAGGTGGCAAGCAATAAAGCTGCTCTACAG
CGTGTGACATCCGACTTGATCGCATCACCAATTGCATACTTTGCGCGGAC
AAGTCATTTTGATCCAAGTGCCAGGGTCCATGCAGGATTGCGATTCCAAA
GCACATACGCAAAAGCTAGCACAAATCTCACGGCCCCAAAAATGACGACT
TCATGGTTGAGCGCCCTTTTTGGTGGAGGTAACTCGAAATCCAAAGCACA
TCGACCATTTGGCCGGCACGAGGAAGCGCACCTAAGATTGGCAACGCGCA
AGACGAACAAAATCCTGAAGGCCAACCCGGGGGCACGTGTCGAGCCTAAA
TTTCtatcggaggaggacgcacaAATGCTCGTCGAGGAAGCTATGGACAT
TATAAATATCTACGGGATGTCGCATGTCAGCGAGGAGCAACGGGACGTCC
TGGCCAACCAACTGAAGCATTTTCCTCTGCCGAAGGAGGACCTCAGGGCT
CTCGTCAACATGCAGCGAGTGACAGGGGTAAGGGGGAGATGATGGAAGGA
CAACACTGCGTTCAGTATCAAATGCACAGCACACGGGACTTATTATATAC
cgcgcccttgtcctccctatTGTCCATTTTTTCACTTGGTATCGCTCACG
CCCCGCCTtaatttcttttcttccagCGATTTGAAGACGAGGCTCAGAAA
TTGGCCCCCTGGGGGTACGGCGATGACTTCCAAGTCGACCAAGTCCCGCC
AGCACTGCGCAAAGTTCTCGAAAGCATCCAAGATTCGCCGCATTTCTGTG
TGGGTAAACCGAGGGACATCACCATCAACCGGCGCGAGAAATCATTCTAC
CGCCTAGATCCGCACATTGACCCCGCAAAGGACGGCGGCAATGTCTTTAT
ACTCAGCCTTCTTTCTGGGACCGTCATGACGCTCACGCCCACGTCCCGGA
CCATGCATCCGGACCAGCACAAGGCGATGGACACGAGGAAGGTGGCCGAG
GTTTCCTGGCTGCCGGGAAAGGATATCGATGTGGATTTACCTGTGCTGTC
CCTGCTGCACCTGAGCGGAGACGCTCGCTACACGTGGTGCCACGGAATAC
GCCCAGGGGTAACGCAGTCTCAGATCAGCGATTTCAATCTGGGGGGGGTG
ATGTCAgacgagatggagggagtCGACCAGGAGGCTGTGAGGACGCTGGA
GGGGTTGCCACTCTGGGATTGGTGGGGTTCTATGAAAAATTTGCGGCGTC
GAGGCCCGGAGCGTGTGAGCATCATTTGTGCGTTCGCAGACCCAGAATGA
GGTAGCAAGGAGGTCGCGGTAAATTTTgaggggaaaatgaagacgATTTT
GTAGCTCTTGC

Coding sequence (CDS) from alignment at KK037250.1:409828..411638+

>rna8893 ID=rna8893|Name=rna8893|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at KK037250.1:409828..411638+ (Nannochloropsis gaditana)
ATGGCCAGCAAAGTCTCACTAGCGGCAGCAAAGGTGGCAAGCAATAAAGC
TGCTCTACAGCGTGTGACATCCGACTTGATCGCATCACCAATTGCATACT
TTGCGCGGACAAGTCATTTTGATCCAAGTGCCAGGGTCCATGCAGGATTG
CGATTCCAAAGCACATACGCAAAAGCTAGCACAAATCTCACGGCCCCAAA
AATGACGACTTCATGGTTGAGCGCCCTTTTTGGTGGAGGTAACTCGAAAT
CCAAAGCACATCGACCATTTGGCCGGCACGAGGAAGCGCACCTAAGATTG
GCAACGCGCAAGACGAACAAAATCCTGAAGGCCAACCCGGGGGCACGTGT
CGAGCCTAAATTTCtatcggaggaggacgcacaAATGCTCGTCGAGGAAG
CTATGGACATTATAAATATCTACGGGATGTCGCATGTCAGCGAGGAGCAA
CGGGACGTCCTGGCCAACCAACTGAAGCATTTTCCTCTGCCGAAGGAGGA
CCTCAGGGCTCTCGTCAACATGCAGCGAGTGACAGGGCGATTTGAAGACG
AGGCTCAGAAATTGGCCCCCTGGGGGTACGGCGATGACTTCCAAGTCGAC
CAAGTCCCGCCAGCACTGCGCAAAGTTCTCGAAAGCATCCAAGATTCGCC
GCATTTCTGTGTGGGTAAACCGAGGGACATCACCATCAACCGGCGCGAGA
AATCATTCTACCGCCTAGATCCGCACATTGACCCCGCAAAGGACGGCGGC
AATGTCTTTATACTCAGCCTTCTTTCTGGGACCGTCATGACGCTCACGCC
CACGTCCCGGACCATGCATCCGGACCAGCACAAGGCGATGGACACGAGGA
AGGTGGCCGAGGTTTCCTGGCTGCCGGGAAAGGATATCGATGTGGATTTA
CCTGTGCTGTCCCTGCTGCACCTGAGCGGAGACGCTCGCTACACGTGGTG
CCACGGAATACGCCCAGGGGTAACGCAGTCTCAGATCAGCGATTTCAATC
TGGGGGGGGTGATGTCAgacgagatggagggagtCGACCAGGAGGCTGTG
AGGACGCTGGAGGGGTTGCCACTCTGGGATTGGTGGGGTTCTATGAAAAA
TTTGCGGCGTCGAGGCCCGGAGCGTGTGAGCATCATTTGTGCGTTCGCAG
ACCCAGAATGAATGGCCAGCAAAGTCTCACTAGCGGCAGCAAAGGTGGCA
AGCAATAAAGCTGCTCTACAGCGTGTGACATCCGACTTGATCGCATCACC
AATTGCATACTTTGCGCGGACAAGTCATTTTGATCCAAGTGCCAGGGTCC
ATGCAGGATTGCGATTCCAAAGCACATACGCAAAAGCTAGCACAAATCTC
ACGGCCCCAAAAATGACGACTTCATGGTTGAGCGCCCTTTTTGGTGGAGG
TAACTCGAAATCCAAAGCACATCGACCATTTGGCCGGCACGAGGAAGCGC
ACCTAAGATTGGCAACGCGCAAGACGAACAAAATCCTGAAGGCCAACCCG
GGGGCACGTGTCGAGCCTAAATTTCtatcggaggaggacgcacaAATGCT
CGTCGAGGAAGCTATGGACATTATAAATATCTACGGGATGTCGCATGTCA
GCGAGGAGCAACGGGACGTCCTGGCCAACCAACTGAAGCATTTTCCTCTG
CCGAAGGAGGACCTCAGGGCTCTCGTCAACATGCAGCGAGTGACAGGGCG
ATTTGAAGACGAGGCTCAGAAATTGGCCCCCTGGGGGTACGGCGATGACT
TCCAAGTCGACCAAGTCCCGCCAGCACTGCGCAAAGTTCTCGAAAGCATC
CAAGATTCGCCGCATTTCTGTGTGGGTAAACCGAGGGACATCACCATCAA
CCGGCGCGAGAAATCATTCTACCGCCTAGATCCGCACATTGACCCCGCAA
AGGACGGCGGCAATGTCTTTATACTCAGCCTTCTTTCTGGGACCGTCATG
ACGCTCACGCCCACGTCCCGGACCATGCATCCGGACCAGCACAAGGCGAT
GGACACGAGGAAGGTGGCCGAGGTTTCCTGGCTGCCGGGAAAGGATATCG
ATGTGGATTTACCTGTGCTGTCCCTGCTGCACCTGAGCGGAGACGCTCGC
TACACGTGGTGCCACGGAATACGCCCAGGGGTAACGCAGTCTCAGATCAG
CGATTTCAATCTGGGGGGGGTGATGTCAgacgagatggagggagtCGACC
AGGAGGCTGTGAGGACGCTGGAGGGGTTGCCACTCTGGGATTGGTGGGGT
TCTATGAAAAATTTGCGGCGTCGAGGCCCGGAGCGTGTGAGCATCATTTG
TGCGTTCGCAGACCCAGAATGA

Synonyms

Publications