rna8888, rna8888 (mRNA) Nannochloropsis gaditana

Overview
Namerna8888
Unique Namerna8888
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1027
Alignment locationKK037250.1:397017..398627 +

Link to JBrowse

Properties
Property NameValue
Productrps6ka4 protein
Orig transcript idgnl|cribi|Naga_101649g1.1361.mrna
Orig protein idgnl|cribi|Naga_101649g1.1361
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:397017..398627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101649g1gene8617Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8888rna8888-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21815.1cds8858Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8888 ID=rna8888|Name=rna8888|organism=Nannochloropsis gaditana|type=mRNA|length=1027bp
CTCACCCTGGGTACATTTACTTTTCGCGCACGAAATTTGTAAGCCTTTTA
ATTCTCAAATGATATGATCACAGGACACAATTTTTGACAGGCTAATGGTC
GAGGATCTTTGGAGATTTCAGGGCAGGCAGATCATGCCTCAGCCGGCATT
CTTCGTGCGAAGGTAGAGTGTTGGAAGATGGTGGATCCCGTTTTCAGCAC
ATCCCGGCGACAATTGCGGGGGGGCAGGCAGATTTATCCGCCTGCCTACA
TACGGGAGCTGGCATATCTTATGTATTTGGGATTGGAGGTAAGTGGAGCA
TGAATTATAGTGGGTTTTCACAATGAACAGCTGCCAGATCCGAGCATCTT
GTCGAACGGAATACGTCACCCTTGGACGAATTCTACGCATTAAATTGCCC
ACCCAGACTCGTGATGTTGGCCTTCTATCCCTGATTGTCACTTGCCATGG
CTCTCACAGTGATCCTCATCCCTTTCATAGATCCGGGACCGGAAAGTGCC
CAAGTCCAAGGTGGTGTTGCCCTCCTGTTTCATTGGCGGAGAGGCGGTTT
CATGGCTGCACATCAAGGGACATGCCGCGTCTCGGGCTGAGGCGCTGAGG
CTGGGGGACGAGATGATTGCCCTGGGCCTGGTGCAAACGTTGGCAGACGT
GAAGACAGAGCGCCTCGAGCGGCCTCGGGCGGGGCCCGGCGGGAGATCGA
GCGGGAAGCACCCCCTCCCCTCCATGCACGACTCCTACCGCCTCTACCAG
TTTACCTGCGACGTGGAGGACGCGGCCTGCGAGGGCCTGGGCCTGCCGCT
GCCTTCCCCGTCCTCCCTACGCTTCCCGCCCCTCCCGCCCTCCACGGGCC
CCGCGGAAGCCCCCCTCGGGCTCTCTCAGCGCTGGGCCTTCCCCGCCCGA
ACAGCTCACAATTCCCTCATTCTGGATATGGGCCTGGCCAAGGAGATGGA
GGCTGCGTTTGCCTGGGGTGCTCCCACGCCCGCTCCTTGTCCGGCCTCCC
TTCCTACCGCCCCGGTCCCGGACTCCC
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protein sequence of rna8888

>rna8888-protein ID=rna8888-protein|Name=rna8888|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MAARGGSGRRRGRGGGQGGKEGGREGGGKGGREGRSAGLERDGADRARGL
RQGVPGPSEQPIRRLAGAGGGGGGREGAPRAAVCPEGAGQGGSDAAEPDR
ADVERARALGHPPASLPRPPPLRVQHLPTPLPGPGVLPGRGPVHVDEEGG
PDGGGRGAGVCSGDGAGPGLLARPRGALPGPEARERADGAGRAPEARRPG
LGPPLRQRPSFAGGGEGKGGGGRRGRGGGREGGREGRRERGREDLFVSHH
GLIRCPAPATLYRSHSFCGTHEYLAPEVLLNQGHSLPVDWWCLGLCLHEM
LTRRHPFKPLPPPSLPPSPAPSPSSPASSPPACPGEVMRNICGFPPFLHP
SLSSDAAALLVRLLEKDPDRRLGGVAALRQQPFFKNLNWEAVYEKRVEAP
YRPRVRSDEDVGCFAGCLTEERVRYSDVVASEDGWVRGKGEEGREGEREG
GGCLLPVWPRGRGRGECQGWSWRGRKTRREEEEEGMWEGFEYVAEEG
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mRNA from alignment at KK037250.1:397017..398627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8888 ID=rna8888|Name=rna8888|organism=Nannochloropsis gaditana|type=mRNA|length=1611bp|location=Sequence derived from alignment at KK037250.1:397017..398627+ (Nannochloropsis gaditana)
Atggcggcgaggggaggttcggggcggaggcgagggcgtggcggtggcca
gggagggaaggagggagggagggaaggagggggcaagggagggagggaag
gtcggTCTGCAGGACTTGAGCGTGATGGCGCTGATCGGGCGCGGGGGCTT
CGGCAAGGTGTACCTGGCCCGTCGGAGCAACCGATCCGGAGgttggcggg
ggcgggagggggagggggcgggagggagggcgctcCCCGGGCAGCTGTGT
GCCCTGAAGgtgctggacaaggaggaagtgatgcGGCGGAGCCAGATCGA
GCGGACGtggagcgagcgagggctCTTGGTCACCCTCCggcatcccttcc
tcgtccgcctcctcttcgcgtTCAGCACCTCCCGACGCCTCTACCTGGGC
CTGGAGTTCTGCCAGGGCGGGGACCTGTTCAcgttgatgaggagggaggg
ccggatgggggaggacgcggtgcgGGTGTATGCAGCGGAGATGGCGCTGG
CCCTGGACTACTTGCACGCCCAAGGGGTGCTCTACCGGGACCTGAAGCCC
GAGAACGTGCTGATGGGGCGGGACGGGCACCTGAAGCTCGCAGACCTGGG
CTTGGCCCGCCACTTCGTCAGCGACCCTCCTTtgcaggcggtggggaggg
caaggggggaggaggaaggaggggccgagggggagggagggagggaggaa
gggagggaaggagggagaggggaagggaagaccTCTTCGTCTCCCACCAT
GGCCTCATCcgctgccccgcccccgccactTTGTACCGCTCTCACTCCTT
CTGCGGCACTCACGAATACCTCGCGCCCGAAGTCCTCCTCAATCAGGGCC
ACTCGCTTCCAGTCGACTGGTGGTGCCTaggcctctgcctccacgaAATG
CTCACCCGGAGGCACCCCTTcaagccccttcccccgccctccctccctcc
ttcccccgccccctccccttcctcccccgcgtcctcgccgcccgcctGCC
CGGGGGAAGTCATGCGCAACATCTGTGgattcccccctttcctccatccc
tccctctcctcggaCGCTgcagccctcctcgtccgcctcctggagAAGGA
CCCCGACCGGCGGCTGGGAGGTGTAGCCGCCCTACGTCAGCAACCGTTTT
TTAAAAATTTGAACTGGGAGGCCGTTTACGAGAAACGGGTGGAGGCTCCT
TATCGCCCCCGGGTCCgctcggacgaggacgtgggatGCTTCGCGGGGTG
tctgacggaggagagggtgcgcTACAGTGATGTGGTGGCCAGTGAGGACG
GTTGGgtaagggggaagggggaggaagggcgggagggagagagggaggga
gggggatgctTGCTCCCGGTGTGGCCccgcgggcggggaagaggagagtg
TCAAGGATGGTcctggcgagggaggaagacgaggagggaggaggaggagg
agggaatgtgggagggcttcgagtacgtggcggaggagggataagtaggg
ggggggaaggagggggggcggagagggaggcattgcGTATGAGTCGCGCG
TGCGTGTAAATAGGGCATGTTGGTAATCAAAAATCGAATCATTGCACTGA
GGGTGCCCgtg
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Coding sequence (CDS) from alignment at KK037250.1:397017..398627+

>rna8888 ID=rna8888|Name=rna8888|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at KK037250.1:397017..398627+ (Nannochloropsis gaditana)
Atggcggcgaggggaggttcggggcggaggcgagggcgtggcggtggcca
gggagggaaggagggagggagggaaggagggggcaagggagggagggaag
gtcggTCTGCAGGACTTGAGCGTGATGGCGCTGATCGGGCGCGGGGGCTT
CGGCAAGGTGTACCTGGCCCGTCGGAGCAACCGATCCGGAGgttggcggg
ggcgggagggggagggggcgggagggagggcgctcCCCGGGCAGCTGTGT
GCCCTGAAGgtgctggacaaggaggaagtgatgcGGCGGAGCCAGATCGA
GCGGACGtggagcgagcgagggctCTTGGTCACCCTCCggcatcccttcc
tcgtccgcctcctcttcgcgtTCAGCACCTCCCGACGCCTCTACCTGGGC
CTGGAGTTCTGCCAGGGCGGGGACCTGTTCAcgttgatgaggagggaggg
ccggatgggggaggacgcggtgcgGGTGTATGCAGCGGAGATGGCGCTGG
CCCTGGACTACTTGCACGCCCAAGGGGTGCTCTACCGGGACCTGAAGCCC
GAGAACGTGCTGATGGGGCGGGACGGGCACCTGAAGCTCGCAGACCTGGG
CTTGGCCCGCCACTTCGTCAGCGACCCTCCTTtgcaggcggtggggaggg
caaggggggaggaggaaggaggggccgagggggagggagggagggaggaa
gggagggaaggagggagaggggaagggaagaccTCTTCGTCTCCCACCAT
GGCCTCATCcgctgccccgcccccgccactTTGTACCGCTCTCACTCCTT
CTGCGGCACTCACGAATACCTCGCGCCCGAAGTCCTCCTCAATCAGGGCC
ACTCGCTTCCAGTCGACTGGTGGTGCCTaggcctctgcctccacgaAATG
CTCACCCGGAGGCACCCCTTcaagccccttcccccgccctccctccctcc
ttcccccgccccctccccttcctcccccgcgtcctcgccgcccgcctGCC
CGGGGGAAGTCATGCGCAACATCTGTGgattcccccctttcctccatccc
tccctctcctcggaCGCTgcagccctcctcgtccgcctcctggagAAGGA
CCCCGACCGGCGGCTGGGAGGTGTAGCCGCCCTACGTCAGCAACCGTTTT
TTAAAAATTTGAACTGGGAGGCCGTTTACGAGAAACGGGTGGAGGCTCCT
TATCGCCCCCGGGTCCgctcggacgaggacgtgggatGCTTCGCGGGGTG
tctgacggaggagagggtgcgcTACAGTGATGTGGTGGCCAGTGAGGACG
GTTGGgtaagggggaagggggaggaagggcgggagggagagagggaggga
gggggatgctTGCTCCCGGTGTGGCCccgcgggcggggaagaggagagtg
TCAAGGATGGTcctggcgagggaggaagacgaggagggaggaggaggagg
agggaatgtgggagggcttcgagtacgtggcggaggagggataa
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Synonyms
Publications