rna8887, rna8887 (mRNA) Nannochloropsis gaditana

Overview
Namerna8887
Unique Namerna8887
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1016
Alignment locationKK037250.1:395034..396060 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100431g7.10742.mrna
Orig protein idgnl|cribi|Naga_100431g7.10742
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:395034..396060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100431g7gene8616Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8887rna8887-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21816.1cds8857Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8887 ID=rna8887|Name=rna8887|organism=Nannochloropsis gaditana|type=mRNA|length=1016bp
GCATTACCGCAATATTTCATGTGTGGTGGAAATGTAGAAGCCACTATGCC
TGGTGGCTGTCCATATTTGAAGCTTAAGTCCTCTATCCCGCGGTATTTCC
AAGTTCAGGTACCGGGCACAAATGCATCGCCCCTTCCTTCTACAGGGGAC
TGTTGCCCCCATCTCTCTTTTGCTGGGCTTGCTGGTCATCTGTACCATAA
CGCATGGCTTTTTTGTCCCATACCTGCCCTCCTCGTCATTGTCGTCGTCA
GCGTCAGCAATGAGCGTCGTATCTGGATTGTCCGTAGGCAAGGCAGTACC
GCGCTTAGGTAGTAGCCAGCTATGGGCGGAGGTGGCAGAGAAATCTGAAG
GAGTATCGGATGTGACGGAACGGGTCATCACCGTCTCAGACTCGGCCCTA
AAGCATTTGGAAGACCTGCGCGCGAAGCAAGGAGTGGAGCACCTGTACCT
GCGGATGGGGGTGCGGTCAGGGGGTTGCTCGGGCATGAGCTACGTCCTGG
ACGTGATGAAGCCAGAGGAGGTGACCGAGGAAGATCACGTGGAGAGCTAC
AGCGAGCACCACTTCTCCTGCGTCGTGGATCCCAAGAGTTTACTCTACCT
TTTCGGCCTTCGCCTGGACTTTAAGGATCAGTTGATCGGGGGAGGGTTCG
CGTTTTTGAACCCGAACGCCCAGGAAAGCTGCGGGTGCGGTTCCTCTTTT
GGGGTGTAGGGAGGAGAGAAGGAAAAAGCGAGGGGGTGGACGGGAGTGCG
CGTGGTCACGCCTCGCAAGAAGGCGGACGTTGCCGCAGGGGCGACGTGGA
AGCCTCCATCTTTATTTGAGAGATTTCGCCTTTCTTGCTTCGCCTGATCC
AACCGCCACCGGGGAGCTGCAGTGACGTTGTCGGGACGGTCATGTACATT
TGTGTCAGTTTCAGCTTTTAGAAATGGATGCCAGCGCCTGTTACACTCTA
GCTCAGTAGCAGTAGCCGCCTTGGCTAAAAAGGAATCACGAAAATTGAAG
CGCATAGTAGTGGACA
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protein sequence of rna8887

>rna8887-protein ID=rna8887-protein|Name=rna8887|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYQFTCD
VEDAACEGLGLPLPSPSSLRFPPLPPSTGPAEAPLGLSQRWAFPARTAHN
SLILDMGLAKEMEAAFAWGAPTPAPCPASLPTAPVPDS
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mRNA from alignment at KK037250.1:395034..396060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8887 ID=rna8887|Name=rna8887|organism=Nannochloropsis gaditana|type=mRNA|length=1027bp|location=Sequence derived from alignment at KK037250.1:395034..396060+ (Nannochloropsis gaditana)
CTCACCCTGGGTACATTTACTTTTCGCGCACGAAATTTGTAAGCCTTTTA
ATTCTCAAATGATATGATCACAGGACACAATTTTTGACAGGCTAATGGTC
GAGGATCTTTGGAGATTTCAGGGCAGGCAGATCATGCCTCAGCCGGCATT
CTTCGTGCGAAGGTAGAGTGTTGGAAGATGGTGGATCCCGTTTTCAGCAC
ATCCCGGCGACAAttgcgggggggcaggcagaTTTATCCGCCTGCCTACA
TACGGGAGCTGGCATATCTTATGTATTTGGGATTGGAGGTAAGTGGAGCA
TGAATTATAGTGGGTTTTCACAATGAACAGCTGCCAGATCCGAGCATCTT
GTCGAACGGAATACGTCACCCTTGGACGAATTCTACGCATTAAATTGCCC
ACCCAGACTCGTGATGTTGGCCTTCTATCCCTGATTGTCACTTGCCATGG
CTCTCACAGTGATCCTCATCCCTTTCATAGATCCGGGACCGGAAAGTGCC
CAAGTCCAAGGTGGTGTTGCCCTCCTGTTTCATTGGCGGAGAGGCGGTTT
CATGGCTGCACATCAAGGGACATGCCGCGTCTCGGGCTGAGGCGCTGAGG
CTGGGGGACGAGATGATTGCCCTGGGCCTGGTGCAAACGTTGGCAGACGT
GAAGACAGAGCGCCTCGAGCGGCCTCGGGCGGGGCCCGGCGGGAGATCGA
GCGGGAagcaccccctcccctccatgcacGACTCCTACCGCCTCTACCAG
TTTACCtgcgacgtggaggacgcggcctgcgagggcctgggcctgccgct
gccttccccgtcctccctacgcttcccgcccctcccgccctccacgggCC
CCGCGGAAGCCCCCCTCGGGCTCTCTCAGCGCTGGGCCTTCCCCGCCCGA
ACAGCTCACAATTCCCTCATTCTGGATATGGGCCTggccaaggagatgga
ggctgCGTTTGCCTGGGGTGCTCCCACGCCCGCTCCTTGTccggcctccc
ttcctaccgccCCGGTCCCGGACTCCC
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Coding sequence (CDS) from alignment at KK037250.1:395034..396060+

>rna8887 ID=rna8887|Name=rna8887|organism=Nannochloropsis gaditana|type=CDS|length=415bp|location=Sequence derived from alignment at KK037250.1:395034..396060+ (Nannochloropsis gaditana)
ATGATTGCCCTGGGCCTGGTGCAAACGTTGGCAGACGTGAAGACAGAGCG
CCTCGAGCGGCCTCGGGCGGGGCCCGGCGGGAGATCGAGCGGGAagcacc
ccctcccctccatgcacGACTCCTACCGCCTCTACCAGTTTACCtgcgac
gtggaggacgcggcctgcgagggcctgggcctgccgctgccttccccgtc
ctccctacgcttcccgcccctcccgccctccacgggCCCCGCGGAAGCCC
CCCTCGGGCTCTCTCAGCGCTGGGCCTTCCCCGCCCGAACAGCTCACAAT
TCCCTCATTCTGGATATGGGCCTggccaaggagatggaggctgCGTTTGC
CTGGGGTGCTCCCACGCCCGCTCCTTGTccggcctcccttcctaccgccC
CGGTCCCGGACTCCC
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Synonyms
Publications