EWM21816.1, cds8857 (CDS) Nannochloropsis gaditana

Overview
NameEWM21816.1
Unique Namecds8857
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:395646..396060 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21816.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100431g7.10742.mrna
GbkeyCDS
End range.
End range396060
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:395646..396060 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Homology
[Close]
BLAST of EWM21816.1 vs. NCBI_GenBank
Match: gi|585102157|gb|EWM21816.1| (hypothetical protein Naga_100431g7, partial [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 1.722e-93
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 
Query:    1 MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYQFTCDVEDAACEGLGLPLPSPSSLRFPPLPPSTGPAEAPLGLSQRWAFPARTAHNSLILDMGLAKEMEAAFAWGAPTPAPCPASLPTAPVPDS 138
            MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYQFTCDVEDAACEGLGLPLPSPSSLRFPPLPPSTGPAEAPLGLSQRWAFPARTAHNSLILDMGLAKEMEAAFAWGAPTPAPCPASLPTAPVPDS
Sbjct:    1 MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYQFTCDVEDAACEGLGLPLPSPSSLRFPPLPPSTGPAEAPLGLSQRWAFPARTAHNSLILDMGLAKEMEAAFAWGAPTPAPCPASLPTAPVPDS 138
[Close]
BLAST of EWM21816.1 vs. NCBI_GenBank
Match: gi|553181327|ref|XP_005853546.1| (pleckstrin g- interacting region: mechanosensitive ion channel, partial [Nannochloropsis gaditana CCMP526] >gi|422295516|gb|EKU22815.1| pleckstrin g- interacting region: mechanosensitive ion channel, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.369 bits (381), Expect = 2.803e-44
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0 
Query:    1 MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYQFTCDVEDAACEGLGLPLPSPSSLRFPPL 74
            MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLY FTCDVEDAACEGLGLPLPSPSSLRFPPL
Sbjct:   82 MIALGLVQTLADVKTERLERPRAGPGGRSSGKHPLPSMHDSYRLYHFTCDVEDAACEGLGLPLPSPSSLRFPPL 155
The following BLAST results are available for this feature:
BLAST of EWM21816.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102157|gb|EWM21816.1|1.722e-93100.00hypothetical protein Naga_100431g7, partial [Nanno... [more]
gi|553181327|ref|XP_005853546.1|2.803e-4498.65pleckstrin g- interacting region: mechanosensitive... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8887rna8887Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications