rna8886, rna8886 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8886
Unique Name	rna8886
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1602
Alignment location	KK037250.1:392974..394758 -

Link to JBrowse

Properties


Property Name	Value
Product	iron-sulfur cluster assembly accessory protein
Orig transcript id	gnl\|cribi\|Naga_100431g6.10746.mrna
Orig protein id	gnl\|cribi\|Naga_100431g6.10746
Gene	iscA
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:392974..394758 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
iscA	gene8615	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8886	rna8886-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21820.1	cds8856	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:392974..394758-
coding sequence from alignment at KK037250.1:392974..394758-

mRNA sequence

>rna8886 ID=rna8886|Name=rna8886|organism=Nannochloropsis gaditana|type=mRNA|length=1602bp
TCCATAGCCGAGCATGTTGGAGCATTTCAACGACCTGACGAATTCCTTGC
ATATGATACATACTTTTTACTCACAGCTGTCTGTGGTTCGAGAATGATGG
GTATCAGATTCTCTGCTCTCCTCGTCGCGTTCCTCGCTTCCATCCCGTAC
CTCCTCGACCTAGCCACGCGCCGAGAATACCCAGTCCCACCTCCAGAAGG
GGCCGTTGTGGTCACAGGCGCCTCAACTGGCATTGGTGCACATGCTGCCC
ATAGCCTAGCTCGAACAGGCTTCCTTGTTTTTGCCGGTGTTCGGAAGGAA
CTAGACGGAGAGACCTTGAAGGCCGAGGCCCCAACGCTAGAATCTCAGGA
AAATATAGTACCCATCATCCTCGATGTGACGAAGCAAGAGCAGATTGATA
AAGCTGTGCAAACTGTCAGCAGTACATTGGACTCTTTGGGAGGAAGGCCT
CTTGTGGGGCTGGTGAACAACGCCGGCGTGGGCGGGTCAAACAAGCCTGT
CGAGTTTCAGAGCATGGATGACTTGCGCTGGCTTTTTGACGTGAATTTTT
TTGGTGCCATCGCCACCACCAAGGCATTTTTAGCCCTCCTCCGTGCCAGT
AAAGGGAGGGTCATCAACATCAGCAGCCTGGCCGGTCTGACTGTGGCGCC
CTTCATGACAGACTACTGTGCGAGCAAGTGGGCGTTAGAGGCGTTTTCCG
ACGCCCTGCGCGTTGAAATGGGGGAGCTTGGAGTCTCGGTGTCAGTGGTC
GAGCCGGCCTATGTCACAAGCGCAATTTTTGGCAAAATAGCCACCAGGAT
GAAAGAAACCGCGGACTCCGTGTCCGAAAAGGTGATGGAAGTGTACGGCC
ATCTCGTACAGAATCCCACGTACACGCGACGGTGCATCGAGAAGGCGAGT
CCCCCCACCGTGACGAGTGACGCCATCCTCGACGCCCTGACCGCCAAGCA
CCCACAGACCCGCTACGTGGTTGCCAACGTAGACGGCCTGTCCGCGAAAG
TCATCGGGTGGATGATATGGATGTTCAACGACCGAATCAAGGACAAGCTC
ATCGAGATTTCCCGGCTCAGACAGCGCAAGGCACAGTAAATGCCAGAGAC
GATAGTTTTCTTTTCAACAGCTGGATTGGGGAAGGGGTATCCATGGGTGT
CGGGGTCGGAAGCATGGGGGGCCAGCCGGGTGCAGCAAGAATGATATCAA
GGGAAAGAAGAGGGGGCACGGGCCACGAGTCCTCCTCGTCTGCCCGCAGG
ACGGATCGATCGTTGGAGAGAAAGCAAAGGGTTTTGGATACAGAGCATCA
AATCAATAGCGGGGCTTGGCTGAGTGGACGAAGGCGTCAGGAAGCGCCTA
CACGAGCGTTGCCTGGGTCTTTGGTAGGACCAGTGGCAAAGGAGGGTAGG
ACAAAATTTCGAAAAGAATGCGATGAAATGAAAAAAGGACGCCGCCACAC
TCGAGCGTACAAGTGAAGGCTGGGCTCAGCTGTCCACTACTATGCGCTTC
AATTTTCGTGATTCCTTTTTAGCCAAGGCGGCTACTGCTACTGAGCTAGA
GTGTAACAGGCGCTGGCATCCATTTCTAAAAGCTGAAACTGACACAAATG
TA

protein sequence of rna8886

>rna8886-protein ID=rna8886-protein|Name=rna8886|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVV
SGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLR
AKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSC
VVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV

mRNA from alignment at KK037250.1:392974..394758-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8886 ID=rna8886|Name=rna8886|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp|location=Sequence derived from alignment at KK037250.1:392974..394758- (Nannochloropsis gaditana)
GCATTACCGCAATATTTCATGTGTGGTGGAAATGTAGAAGCCACTATGCC
TGGTGGCTGTCCATATTTGAAGCTTAAGTCCTCTATCCCGCGGTATTTCC
AAGTTCAGGTACCGGGCACAAATGCATCGCCCCTTCCTTCTACAGGGGAC
TGTTGCCCCCATCTCTCTTTTGCTGGGCTTGCTGGTCATCTGTACCATAA
CGCATGGCTTTTTTGTCCCATACCTGCCCTCCTCGTCATTGTCGTCGTCA
GCGTCAGGTAAGCTTGGTTACCGCAGCCAGCAACTTTCTTTTGCAGCCTT
CGTTCATCTGCTTGAGTCTCGTGTGCTCCCATCTCGCTCCTGCCTCAAGG
CGAGCATCTCTTATGGCTGTTTGGGCAAGAATGTGGTGTATGGATGTACC
ACCACTGTGTGCCATAGCATTCCAGAGGTGTGAGGATGTGCTGGGTCAGC
GGCTTTGGTCCTTCTGCTCATCCAGAGCAGAGTATGTGACGTGGGAGAGA
CTTTCTGTACTCGTCAATCTCTCAAATCAGTAACACGCATGTGTACATGT
CATGTAGCAAGCCGCGATTGAGCAACACTTTGTGGTCTATTTTGTTTAAC
AGTTCGCGAGAATAAAGCGCTGCAAGCAGAAAGTCATGACTTACTTCCTT
CATCTACAACGATGCGATGTTCACGAATTTACTACAGCAATGAGCGTCGT
ATCTGGATTGTCCGTAGGCAAGGCAGTACCGCGCTTAGGTAGTAGCCAGC
TATGGGCGGAGGTGGCAGGTGCGTCATGCTGGCTATAAAGAGGGCGGGAA
ATGAATCTTTCGAGAAGTTATAAACCGCGCGTTTCGCCGATGGACGCTAT
GAAAGCTTCGGTTAAAGAGGCGGAAATGGGACGATCAAGAACTGGGGAAG
AGGGTTGAAGAAGAGGTCGTGGGGGCGTAGATAAAGCTGTGTTGAGTTCT
TTCTCCCCCTCTCATTTCTGTGCCCTCCCTTTCCTTCCGCCCACAGAGAA
ATCTGAAGGAGTATCGGATGTGACGGAACGGGTCATCACCGTCTCAGACT
CGGCCCTAAAGCATTTGGAAGACCTGCGCGCGAAGCAAGGAGTGGAGCAC
CTGTACCTGCGGATGGGGGTGCGGTCAGGGGGTTGCTCGGGCATGAGCTA
CGTCCTGGACGTGATGAAGCCAGAGGTGCGTTCCTCGGGTGGTGTGGGAG
TGTCGCGGATCCACAAAGGCCGGGCGTGGTGGCGCGAAAAACTCACCCCC
TTCCTCCTTCCCGCCCTCTCCCCATCCATCCTCCAGGAGGTGACCGAGGA
AGATCACGTGGAGAGCTACAGCGAGCACCACTTCTCCTGCGTCGTGGATC
CCAAGAGTTTACTCTACCTTTTCGGCCTTCGCCTGGACTTTAAGGATCAG
TTGATCGGGGGAGGGTTCGCGTTTTTGAACCCGAACGCCCAGGAAAGCTG
CGGGTGCGGTTCCTCTTTTGGGGTGTAGGGAGGAGAGAAGGAAAAAGCGA
GGGGGTGGACGGGAGTGCGCGTGGTCACGCCTCGCAAGAAGGCGGACGTT
GCCGCAGGGGCGACGTGGAAGCCTCCATCTTTATTTGAGAGATTTCGCCT
TTCTTGCTTCGCCTGATCCAACCGCCACCGGGGAGCTGCAGTGACGTTGT
CGGGACGGTCATGTACATTTGTGTCAGTTTCAGCTTTTAGAAATGGATGC
CAGCGCCTGTTACACTCTAGCTCAGTAGCAGTAGCCGCCTTGGCTAAAAA
GGAATCACGAAAATTGAAGCGCATAGTAGTGGACA

Coding sequence (CDS) from alignment at KK037250.1:392974..394758-

>rna8886 ID=rna8886|Name=rna8886|organism=Nannochloropsis gaditana|type=CDS|length=2352bp|location=Sequence derived from alignment at KK037250.1:392974..394758- (Nannochloropsis gaditana)
GAGGTGACCGAGGAAGATCACGTGGAGAGCTACAGCGAGCACCACTTCTC
CTGCGTCGTGGATCCCAAGAGTTTACTCTACCTTTTCGGCCTTCGCCTGG
ACTTTAAGGATCAGTTGATCGGGGGAGGGTTCGCGTTTTTGAACCCGAAC
GCCCAGGAAAGCTGCGGGTGCGGTTCCTCTTTTGGGGTGTAGAGAAATCT
GAAGGAGTATCGGATGTGACGGAACGGGTCATCACCGTCTCAGACTCGGC
CCTAAAGCATTTGGAAGACCTGCGCGCGAAGCAAGGAGTGGAGCACCTGT
ACCTGCGGATGGGGGTGCGGTCAGGGGGTTGCTCGGGCATGAGCTACGTC
CTGGACGTGATGAAGCCAGAGCAATGAGCGTCGTATCTGGATTGTCCGTA
GGCAAGGCAGTACCGCGCTTAGGTAGTAGCCAGCTATGGGCGGAGGTGGC
AGATGCATCGCCCCTTCCTTCTACAGGGGACTGTTGCCCCCATCTCTCTT
TTGCTGGGCTTGCTGGTCATCTGTACCATAACGCATGGCTTTTTTGTCCC
ATACCTGCCCTCCTCGTCATTGTCGTCGTCAGCGTCAGGAGGTGACCGAG
GAAGATCACGTGGAGAGCTACAGCGAGCACCACTTCTCCTGCGTCGTGGA
TCCCAAGAGTTTACTCTACCTTTTCGGCCTTCGCCTGGACTTTAAGGATC
AGTTGATCGGGGGAGGGTTCGCGTTTTTGAACCCGAACGCCCAGGAAAGC
TGCGGGTGCGGTTCCTCTTTTGGGGTGTAGAGAAATCTGAAGGAGTATCG
GATGTGACGGAACGGGTCATCACCGTCTCAGACTCGGCCCTAAAGCATTT
GGAAGACCTGCGCGCGAAGCAAGGAGTGGAGCACCTGTACCTGCGGATGG
GGGTGCGGTCAGGGGGTTGCTCGGGCATGAGCTACGTCCTGGACGTGATG
AAGCCAGAGCAATGAGCGTCGTATCTGGATTGTCCGTAGGCAAGGCAGTA
CCGCGCTTAGGTAGTAGCCAGCTATGGGCGGAGGTGGCAGATGCATCGCC
CCTTCCTTCTACAGGGGACTGTTGCCCCCATCTCTCTTTTGCTGGGCTTG
CTGGTCATCTGTACCATAACGCATGGCTTTTTTGTCCCATACCTGCCCTC
CTCGTCATTGTCGTCGTCAGCGTCAGGAGGTGACCGAGGAAGATCACGTG
GAGAGCTACAGCGAGCACCACTTCTCCTGCGTCGTGGATCCCAAGAGTTT
ACTCTACCTTTTCGGCCTTCGCCTGGACTTTAAGGATCAGTTGATCGGGG
GAGGGTTCGCGTTTTTGAACCCGAACGCCCAGGAAAGCTGCGGGTGCGGT
TCCTCTTTTGGGGTGTAGAGAAATCTGAAGGAGTATCGGATGTGACGGAA
CGGGTCATCACCGTCTCAGACTCGGCCCTAAAGCATTTGGAAGACCTGCG
CGCGAAGCAAGGAGTGGAGCACCTGTACCTGCGGATGGGGGTGCGGTCAG
GGGGTTGCTCGGGCATGAGCTACGTCCTGGACGTGATGAAGCCAGAGCAA
TGAGCGTCGTATCTGGATTGTCCGTAGGCAAGGCAGTACCGCGCTTAGGT
AGTAGCCAGCTATGGGCGGAGGTGGCAGATGCATCGCCCCTTCCTTCTAC
AGGGGACTGTTGCCCCCATCTCTCTTTTGCTGGGCTTGCTGGTCATCTGT
ACCATAACGCATGGCTTTTTTGTCCCATACCTGCCCTCCTCGTCATTGTC
GTCGTCAGCGTCAGGAGGTGACCGAGGAAGATCACGTGGAGAGCTACAGC
GAGCACCACTTCTCCTGCGTCGTGGATCCCAAGAGTTTACTCTACCTTTT
CGGCCTTCGCCTGGACTTTAAGGATCAGTTGATCGGGGGAGGGTTCGCGT
TTTTGAACCCGAACGCCCAGGAAAGCTGCGGGTGCGGTTCCTCTTTTGGG
GTGTAGAGAAATCTGAAGGAGTATCGGATGTGACGGAACGGGTCATCACC
GTCTCAGACTCGGCCCTAAAGCATTTGGAAGACCTGCGCGCGAAGCAAGG
AGTGGAGCACCTGTACCTGCGGATGGGGGTGCGGTCAGGGGGTTGCTCGG
GCATGAGCTACGTCCTGGACGTGATGAAGCCAGAGCAATGAGCGTCGTAT
CTGGATTGTCCGTAGGCAAGGCAGTACCGCGCTTAGGTAGTAGCCAGCTA
TGGGCGGAGGTGGCAGATGCATCGCCCCTTCCTTCTACAGGGGACTGTTG
CCCCCATCTCTCTTTTGCTGGGCTTGCTGGTCATCTGTACCATAACGCAT
GGCTTTTTTGTCCCATACCTGCCCTCCTCGTCATTGTCGTCGTCAGCGTC
AG

Synonyms

Publications