EWM21820.1, cds8856 (CDS) Nannochloropsis gaditana

Overview
NameEWM21820.1
Unique Namecds8856
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:394502..394637 -
Alignment locationKK037250.1:393991..394071 -
Alignment locationKK037250.1:393584..393762 -
Alignment locationKK037250.1:393281..393472 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21820.1
Productiron-sulfur cluster assembly accessory protein
Orig transcript idgnl|cribi|Naga_100431g6.10746.mrna
GeneiscA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:394502..394637 -
KK037250.1supercontigKK037250.1:393991..394071 -
KK037250.1supercontigKK037250.1:393584..393762 -
KK037250.1supercontigKK037250.1:393281..393472 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0051536iron-sulfur cluster binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0019538protein metabolic process
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR017870FeS_cluster_insertion_CS
IPR031108ISCA-like
IPR000361FeS_biogenesis
IPR016092FeS_cluster_insertion
Homology
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|585102161|gb|EWM21820.1| (iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana])

HSP 1 Score: 393.66 bits (1010), Expect = 1.279e-138
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV
Sbjct:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|553181331|ref|XP_005853547.1| (iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana CCMP526] >gi|422295517|gb|EKU22816.1| iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 340.502 bits (872), Expect = 1.496e-117
Identity = 186/195 (95.38%), Postives = 186/195 (95.38%), Query Frame = 0
Query:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRS G  G      VMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV
Sbjct:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSRGLLGHELRPGVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|298705983|emb|CBJ29104.1| (iron-sulfur assembly protein [Ectocarpus siliculosus])

HSP 1 Score: 165.622 bits (418), Expect = 7.989e-49
Identity = 88/181 (48.62%), Postives = 118/181 (65.19%), Query Frame = 0
Query:   17 LLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAVPRLGSSQLWAEVAEKSEGVSD-VTERVITVSDSALKHLEDLRAKQGVE-HLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            ++   ++ ++  GF V   P SS  S  S  S VSG +  +       S   A ++  S GV D V E+++ +   A+ HL++LR  QG E  ++LRMGVRSGGCSG+SY++D++K EE+TE+D VE Y    F CV+DPKS+LYL+GL LDF D LIGGGF F NPNA+ SCGCG SFGV
Sbjct:    6 VVAFAMLASMIKGFIVAPTPGSSTGSCRS--SRVSGATTIR-------SHASAALSMSSTGVEDEVMEKIVNIRPKAMDHLQELRRSQGTEGDIFLRMGVRSGGCSGLSYIMDLVKKEEITEDDMVEEY--DGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 175          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|551579715|ref|XP_005775416.1| (iron-sulfur cluster assembly accessory protein, HesB/YadR/YfhF [Emiliania huxleyi CCMP1516] >gi|485627360|gb|EOD22987.1| iron-sulfur cluster assembly accessory protein, HesB/YadR/YfhF [Emiliania huxleyi CCMP1516])

HSP 1 Score: 147.902 bits (372), Expect = 1.047e-41
Identity = 63/111 (56.76%), Postives = 85/111 (76.58%), Query Frame = 0
Query:   85 VITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            +I+ S+ AL  +++LR K G E   LRMGVR+GGCSGMSYV+D M+  E+ E+D    Y +    CV+DPKSL++L+GL+LD+ D+LIGGGF+F NPNA+E+CGCG SFGV
Sbjct:   73 IISFSERALTQIQELREKSGKERACLRMGVRAGGCSGMSYVMDFMEEGEIDEKDTTIDYEQGTIRCVIDPKSLMFLYGLQLDYSDELIGGGFSFANPNAEETCGCGKSFGV 183          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|1072230542|gb|OEU15275.1| (hypothetical protein FRACYDRAFT_218226 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 146.362 bits (368), Expect = 1.555e-41
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 0
Query:   83 ERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            + VI +   A+K L +LR KQ  + L LRMGVR+GGCSG+SY++D    ++V E+D ++ Y      CVVD KS+LYL+GL LDF ++LIGGGF F NPNA++SCGCGSSFGV
Sbjct:   39 DAVINIKPKAMKRLRELREKQKTDSLVLRMGVRNGGCSGLSYIMDFATEDDVQEDDAIDEYPGEKLKCVVDAKSMLYLYGLELDFSEELIGGGFKFFNPNAEDSCGCGSSFGV 151          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|397571940|gb|EJK48037.1| (hypothetical protein THAOC_33202 [Thalassiosira oceanica])

HSP 1 Score: 143.665 bits (361), Expect = 4.050e-40
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = 0
Query:   62 LGSSQLWAEVAEKSEGVSDV---TERVITVSDSALKHLEDLRAKQG--VEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            LGSS   A+V   +   SD     + +I + + A+  L +L+ KQ      L LRMGVR+GGCSG+SYV+D    EE+ +ED V+ YS+    CVVD KSLLYL+GL LD+ D LIGGGF F NPNA+ESCGCGSSFGV
Sbjct:   45 LGSSP--ADVEPPTTAASDYMPPEDAIIMIKEKAMDRLVELKQKQADPSSPLILRMGVRNGGCSGLSYVMDFSTEEEIQDEDEVDDYSQEGIKCVVDAKSLLYLYGLELDYSDDLIGGGFKFFNPNAEESCGCGSSFGV 181          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|505007457|ref|WP_015194559.1| (iron-sulfur cluster assembly accessory protein [Stanieria cyanosphaera] >gi|428270956|gb|AFZ36897.1| iron-sulfur cluster assembly accessory protein [Stanieria cyanosphaera PCC 7437])

HSP 1 Score: 138.272 bits (347), Expect = 1.082e-38
Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   86 ITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            I ++D+ALKH++ LR +QG + LYLR+GVR GGCSGMSY++D  +P +V + D V  Y    F  V DPKSLLYL+GL LD+ + +IGGGF F NPNA ++CGCG SFGV
Sbjct:   12 IQLTDTALKHIKMLREQQGNKELYLRVGVRQGGCSGMSYMMDFEEPNQVRDNDEVFDY--EGFKIVCDPKSLLYLYGLVLDYSNAMIGGGFQFTNPNAAQTCGCGKSFGV 119          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|873231188|emb|CEM08917.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 139.043 bits (349), Expect = 5.248e-38
Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   67 LWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQ---GVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            L   +A +S G S  + R I ++  AL+ + +LRAK+   G   L LRMGV+SGGCSG+SY +D++   +V   D VE+Y +  F  VVDPK+LLYLFG++LD+ D LIGGGF F NPNA +SCGCG SFGV
Sbjct:   47 LRRALAVRSSGAS-TSRRAIDITPKALERIAELRAKKQRDGDGDLVLRMGVKSGGCSGLSYTMDLIDASDVGPRDTVEAYEDEGFKYVVDPKALLYLFGMQLDYCDDLIGGGFRFDNPNADKSCGCGMSFGV 177          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|545363608|ref|XP_005646925.1| (FeS cluster assembly accessory/regulatory protein [Coccomyxa subellipsoidea C-169] >gi|384248898|gb|EIE22381.1| FeS cluster assembly accessory/regulatory protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 135.961 bits (341), Expect = 8.300e-38
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 0
Query:   85 VITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
             IT++++ALK+L+ LR   G E + LRMGV+SGGCSGMSY +D  K E V  ED V  Y E  F  V DPKSLLYLFG+RLD+   LIGGGF F NPNA+ SCGCG SFGV
Sbjct:   19 AITLTEAALKNLKRLREDTGDEKVILRMGVKSGGCSGMSYHMDFEKEENVRAEDAVMEY-EDGFKLVCDPKSLLYLFGMRLDYSAALIGGGFQFHNPNAESSCGCGKSFGV 128          
BLAST of EWM21820.1 vs. NCBI_GenBank
Match: gi|504994902|ref|WP_015182004.1| (iron-sulfur cluster assembly accessory protein [Microcoleus sp. PCC 7113] >gi|428251893|gb|AFZ17852.1| Iron-sulfur cluster assembly accessory protein [Microcoleus sp. PCC 7113])

HSP 1 Score: 135.191 bits (339), Expect = 1.650e-37
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 0
Query:   83 ERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195
            +R I ++++ALKH+  LR +QG + LYLR+GVR GGCSGMSY++D   P +V E+D V  Y    F  V DPKS+LYL+GL LD+ D +IGGGF F NPNA +SCGCG SFGV
Sbjct:    9 QRGIQLTEAALKHVLALRQRQG-KDLYLRVGVRQGGCSGMSYMMDFEDPSKVQEKDEVFDY--EGFKIVCDPKSMLYLYGLVLDYSDAMIGGGFQFTNPNASQSCGCGKSFGV 118          
The following BLAST results are available for this feature:
BLAST of EWM21820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102161|gb|EWM21820.1|1.279e-138100.00iron-sulfur cluster assembly accessory protein [Na... [more]
gi|553181331|ref|XP_005853547.1|1.496e-11795.38iron-sulfur cluster assembly accessory protein [Na... [more]
gi|298705983|emb|CBJ29104.1|7.989e-4948.62iron-sulfur assembly protein [Ectocarpus siliculos... [more]
gi|551579715|ref|XP_005775416.1|1.047e-4156.76iron-sulfur cluster assembly accessory protein, He... [more]
gi|1072230542|gb|OEU15275.1|1.555e-4155.75hypothetical protein FRACYDRAFT_218226 [Fragilario... [more]
gi|397571940|gb|EJK48037.1|4.050e-4053.24hypothetical protein THAOC_33202 [Thalassiosira oc... [more]
gi|505007457|ref|WP_015194559.1|1.082e-3857.27iron-sulfur cluster assembly accessory protein [St... [more]
gi|873231188|emb|CEM08917.1|5.248e-3852.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|545363608|ref|XP_005646925.1|8.300e-3861.26FeS cluster assembly accessory/regulatory protein ... [more]
gi|504994902|ref|WP_015182004.1|1.650e-3757.52iron-sulfur cluster assembly accessory protein [Mi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8886rna8886Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications