rna8885, rna8885 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8885
Unique Name	rna8885
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2187
Alignment location	KK037250.1:391155..393095 +

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase sdr
Orig transcript id	gnl\|cribi\|Naga_100431g4.10743.mrna
Orig protein id	gnl\|cribi\|Naga_100431g4.10743
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:391155..393095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100431g4	gene8614	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8885	rna8885-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21817.1	cds8855	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:391155..393095+
coding sequence from alignment at KK037250.1:391155..393095+

mRNA sequence

>rna8885 ID=rna8885|Name=rna8885|organism=Nannochloropsis gaditana|type=mRNA|length=2187bp
ACGTATGATGCTTCAATATGTCACGGAGCAATTTCAACCTTTTCTCAACA
ACGCTAGATACTTGCAAGTTGTAGTTAGTACTTTGCCTGGAGTAGGATTT
GGTGTCCGTACGTGGCGGGGTTGAACATGCGCGCTGAACTAGTTCCCAGC
GCTTTTATCACCTCAGTATTTTTATTAAGATATTAACCCCATTAAATCAT
CTCTTCACAGGCCATTCCTGACACTCGTCTATCCTGCGCCTCTTCCCCTG
TTGCATGGGATTATCGCGCGTGCGTTGCTGATGGTCTCTAGCCCTGACCG
CGGCCCCGCAAAGCGCCTCTTTTTCTCGTCAGGCCTCCTTCTCTTCCTCA
CCACCACAGTGCTGAGAAAGACAGGCATGCGAAGTGCATCAGCTATACTG
AGGAGAGGAGCTTTCAATTGTATAAGTCCATTCAACAGCGCTGCCTTCAT
CAGACCCGTGAGTGTACCGGGAAGAGTACATCGAAATTTCATTGGTGGGA
ATCCTCACAAGAGCACTTCAAGTCCTGGCCAACGTACTAACCCTCTTCGA
AGTACAAGCCCAGCAACCGCAGCATATCCAGAAATATCTTATGCCCAATC
CGATCAACCTACGGAGGGAGACGATCCCGTACCCGCGGTGGCTAATTACA
CGCGCCTCATGTCCCAGTCGGAACTGCATCGGGATTTCCACGAGCTGGGA
AAGCTGAGTGCCGCGGACGCTGGCAAGGTGGTGTGGGTCCGGGCCCGTAT
TGCTAACGTCCGCGCAAAGGGCAATTCGTGTTTCCTTGTCCTCCGTCAAG
GGCCTTTCGAGACGGTGCAGGCGTGTTATTTCAAGGACAAAAGCGCACCA
GAGCGATCCGAGGCCATGCTGAAATTTATGGGCGGGCTCACTTGTGAGAG
CGTCGTGGACGTGCAAGGCTCCTTACAAGCTGCGCAAGTGAAATCGTGCT
CGGTCACAGACGTGGAGTTGTCAATCCAACGGGTCTACGTAGTCTCATCC
GCCGAGGCGATCCTACCGTTTCAATTGGAAGATGCGGGCCGGCCCGAGGC
TGAGGTGGAAGCGTCGCAAAGCACCGACCGACCGTTTCCTCGCATCGGTC
AGGAGCTTCGCCTGGATAACCGGTGGCTGGATCTGCGCGTTCCTGCCAAC
AACTGCATCATGCGCATTCAATCGGGCGTTTGTCAGCTTTTTCGGGAAAG
TCTTTATGCGGAAGGATTTGTGGAGATCCACACGCCCAAATTGATCGGAG
GGGAGAGCGAGGGCGGAGCCGGCGTGTTTAAGACCGACTATTTTGGTCGA
CCCGCGTGCCTGGCCCAATCTCCTCAGCTGTACAAGCAGATGGCGGTGTC
GGCGGATCTAGGCAGGGTCTTCGAGATCGGCCCCGTCTTCCGCGCCGAGA
ACAGCAACACGCGCCGACACCTGTGCGAATTTACGGGGCTGGACCTGGAA
ATGACGCTGGATGAGCATTACAACGAGGTCCTCGCCATCGCACACCGCAT
GTTTAAACACATCTTCGAGGGTTTGGAGACGCGGTTTGCCAAGGAGCTGG
CAATCATCCGAGAGCAATATGCCTCAGACCCGGTCGCCTTCACGGACGGG
CCTTGCATCGTGCACTGGCCGGAAGCCATCCGGATGCTGCGGGAGGAGGG
AGGAATGCCCGAGGTGGGCGAGCTGGAAGACTTGACCGGGGCCCAGGAGC
TGCGACTCGGGGAGCTCGTCAAAAAAAGGCACGGGGCAGACTTTTTCATC
CTCGACAAGTATCCATCGGCTGTCCGTCCCTTCTACACGATGCCTTGCCC
GTCCGACGCCGCCTACAGCAACTCGTACGACATGTTTCTGCGTGGCCAGG
AGATCTGTTCGGGCGCTCAACGTATCCATGATCCGGACTTGCTGACTCGG
ACAATAGCGGCCAAGGGCTTGCCGATGGAGCCGTTAGAGTCTTACGTGAA
TGCCTTTCGGCATGGTGTGCCGCCGCATGGGGGGGCGGGCATTGGATTGG
AGCGGGTAGTATTTTTGTATCTTGGGTTGGATAATGTGCGTAAGGCTTCC
ATGTTTCCGCGCGATCCGAACCGGTGCGAGCCTTGAGAAAGGAGGATACA
AAAGCACGCTCTTGTGATAACGGTCTGTTCGCTCTCAGATAACTGAGCAA
GAACTCCAAAGAAGCGAATAAAACAGTTGAAATTTCG

protein sequence of rna8885

>rna8885-protein ID=rna8885-protein|Name=rna8885|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MMGIRFSALLVAFLASIPYLLDLATRREYPVPPPEGAVVVTGASTGIGAH
AAHSLARTGFLVFAGVRKELDGETLKAEAPTLESQENIVPIILDVTKQEQ
IDKAVQTVSSTLDSLGGRPLVGLVNNAGVGGSNKPVEFQSMDDLRWLFDV
NFFGAIATTKAFLALLRASKGRVINISSLAGLTVAPFMTDYCASKWALEA
FSDALRVEMGELGVSVSVVEPAYVTSAIFGKIATRMKETADSVSEKVMEV
YGHLVQNPTYTRRCIEKASPPTVTSDAILDALTAKHPQTRYVVANVDGLS
AKVIGWMIWMFNDRIKDKLIEISRLRQRKAQ

mRNA from alignment at KK037250.1:391155..393095+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8885 ID=rna8885|Name=rna8885|organism=Nannochloropsis gaditana|type=mRNA|length=1941bp|location=Sequence derived from alignment at KK037250.1:391155..393095+ (Nannochloropsis gaditana)
TCCATAGCCGAGCATGTTGGAGCATTTCAACGACCTGACGAATTCCTTGC
ATATGATACATACTTTTTACTCACAGCTGTCTGTGGTTCGAGAATGATGG
GTATCAGATTCTCTGCTCTCCTCGTCGCGttcctcgcttccatccCGTAC
CTCCTCGACCTAGCCACGCGCCGAGAATACCCAGTCCCACCTCCAGAAGG
GGCCGTTGTGGTCACAGGCGCCTCAACTGGCATTGGTGCACATGCTGCCC
ATAGCCTAGCTCGAACAGGCTTCCTTGTTTTTGCCGGTGTTCGGAAGGAA
CTAGACGGAGAGACCTTGAAGGCCGAGGCCCCAACGCTAGAATCTCAGGA
AAATATAGTACCCATCATCCTCGATGTGACGAAGCAAGAGCAGATTGATA
AAGCTGTGCAAACTGTCAGCAGTACATTGGACTctttgggaggaaggcct
ctTGTGGGGCTGGTGAACAACGCCGGCGTGGGCGGGTCAAACAAGCCTGT
CGAGTTTCAGAGCATGGATGACTTGCGCTGGCTTTTTGACGTGAATTTTT
TTGGTgccatcgccaccaccaAGGCATTTTTagccctcctccgtgccaGT
AAAGGGAGGGTCATCAACATCAGCAGCCTGGCCGGTCTGACTGTGGCGCC
CTTCATGACAGACTACTGTGCGAGCAAGTGGGCGTTAGAGGCGTTTTCCG
ACGCCCTGCGCGTTGAAATGGGGGAGCTTGGAGTCTCGGTGTCAGTGGTC
GAGCCGGCCTATGTCACAAGCGCAATTTTTGGCAAAATAGCCACCAGGAT
GAAAGAAACCGCGGACTCCGTGTCCGAAAAGGTGGGAATGTGGTTATGGC
GGTCCTCCCCGTTTCCTTCAGCTTGCCCGCTCCGGCTAACGCTCAATTCA
CACACCCCTCGCCGTCATCGCATCTTGCAGGTGATGGAAGTGTACGGCCA
TCTCGTACAGAATCCCACGTACACGCGACGGTGCATCGAGAAGGCGAGTC
CCCCCACCGTGACGAGTGACGCCATCCTCGACGCCCTGACCGCCAAGCAC
CCACAGACCCGCTACGTGGTTGCCAACGTAGACGGTAAGTACAGATTCAT
CTTTTCCTGGGCGGATACGGATACTAGGGGCGGGCTCTGAAGTAGATCCG
TGGGGACAGGTagaggggcgcggggggaTGAAAGGAGCAGAGGGATCGGA
GAGGCCGCCCCAAtacctcccacccctttctcAGCGCCCATAAGCATCCA
CACGTCAACCCTTTCTCTCATTTGGTCGCTCCCACGCCTTCTACCCCACC
CGGCGACTCGCTGCTTCCCATCAGGCCTGTCCGCGAAAGTCATCGGGTGG
ATGATATGGATGTTCAACGACCGAATCAAGGACAAGCTCATCGAGATTTC
CCGGCTCAGACAGCGCAAGGCACAGTAAATGCCAGAGACGATAGTTTTCT
TTTCAACAGCTGGATTGGGGAAGGGGTATCCATGGGTGTCGGGGTCGGAA
GCATGGGGGGCCAGCCGGGTGCAGCAAGAATGATatcaagggaaagaaga
gggggcacGGGCCAcgagtcctcctcgtctgcccGCAGGACGGATCGATC
GTTGGAGAGAAAGCAAAGGGTTTTGGATACAGAGCATCAAATCAATAGCG
GGGCTTGGCTGAGTGGACGAAGGCGTCAGGAAGCGCCTACACGAGCGTTG
CCTGGGTCTTTGGTAGGACCAGTGGCAAAGGAGGGTAGGACAAAATTTCG
AAAAGAATGCGATGAAATGAAAAAAGGACGCCGCCACACTCGAGCGTACA
AGTGAAGGCTGGGCTCAGCTGTCCACTACTATGCGCTTCAATTTTCGTGA
TTCCTTTTTAGCCAAGGCGGCTACTGCTACTGAGCTAGAGTGTAACAGGC
GCTGGCATCCATTTCTAAAAGCTGAAACTGACACAAATGTA

Coding sequence (CDS) from alignment at KK037250.1:391155..393095+

>rna8885 ID=rna8885|Name=rna8885|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at KK037250.1:391155..393095+ (Nannochloropsis gaditana)
ATGATGGGTATCAGATTCTCTGCTCTCCTCGTCGCGttcctcgcttccat
ccCGTACCTCCTCGACCTAGCCACGCGCCGAGAATACCCAGTCCCACCTC
CAGAAGGGGCCGTTGTGGTCACAGGCGCCTCAACTGGCATTGGTGCACAT
GCTGCCCATAGCCTAGCTCGAACAGGCTTCCTTGTTTTTGCCGGTGTTCG
GAAGGAACTAGACGGAGAGACCTTGAAGGCCGAGGCCCCAACGCTAGAAT
CTCAGGAAAATATAGTACCCATCATCCTCGATGTGACGAAGCAAGAGCAG
ATTGATAAAGCTGTGCAAACTGTCAGCAGTACATTGGACTctttgggagg
aaggcctctTGTGGGGCTGGTGAACAACGCCGGCGTGGGCGGGTCAAACA
AGCCTGTCGAGTTTCAGAGCATGGATGACTTGCGCTGGCTTTTTGACGTG
AATTTTTTTGGTgccatcgccaccaccaAGGCATTTTTagccctcctccg
tgccaGTAAAGGGAGGGTCATCAACATCAGCAGCCTGGCCGGTCTGACTG
TGGCGCCCTTCATGACAGACTACTGTGCGAGCAAGTGGGCGTTAGAGGCG
TTTTCCGACGCCCTGCGCGTTGAAATGGGGGAGCTTGGAGTCTCGGTGTC
AGTGGTCGAGCCGGCCTATGTCACAAGCGCAATTTTTGGCAAAATAGCCA
CCAGGATGAAAGAAACCGCGGACTCCGTGTCCGAAAAGGTGATGGAAGTG
TACGGCCATCTCGTACAGAATCCCACGTACACGCGACGGTGCATCGAGAA
GGCGAGTCCCCCCACCGTGACGAGTGACGCCATCCTCGACGCCCTGACCG
CCAAGCACCCACAGACCCGCTACGTGGTTGCCAACGTAGACGGCCTGTCC
GCGAAAGTCATCGGGTGGATGATATGGATGTTCAACGACCGAATCAAGGA
CAAGCTCATCGAGATTTCCCGGCTCAGACAGCGCAAGGCACAGTAAATGA
TGGGTATCAGATTCTCTGCTCTCCTCGTCGCGttcctcgcttccatccCG
TACCTCCTCGACCTAGCCACGCGCCGAGAATACCCAGTCCCACCTCCAGA
AGGGGCCGTTGTGGTCACAGGCGCCTCAACTGGCATTGGTGCACATGCTG
CCCATAGCCTAGCTCGAACAGGCTTCCTTGTTTTTGCCGGTGTTCGGAAG
GAACTAGACGGAGAGACCTTGAAGGCCGAGGCCCCAACGCTAGAATCTCA
GGAAAATATAGTACCCATCATCCTCGATGTGACGAAGCAAGAGCAGATTG
ATAAAGCTGTGCAAACTGTCAGCAGTACATTGGACTctttgggaggaagg
cctctTGTGGGGCTGGTGAACAACGCCGGCGTGGGCGGGTCAAACAAGCC
TGTCGAGTTTCAGAGCATGGATGACTTGCGCTGGCTTTTTGACGTGAATT
TTTTTGGTgccatcgccaccaccaAGGCATTTTTagccctcctccgtgcc
aGTAAAGGGAGGGTCATCAACATCAGCAGCCTGGCCGGTCTGACTGTGGC
GCCCTTCATGACAGACTACTGTGCGAGCAAGTGGGCGTTAGAGGCGTTTT
CCGACGCCCTGCGCGTTGAAATGGGGGAGCTTGGAGTCTCGGTGTCAGTG
GTCGAGCCGGCCTATGTCACAAGCGCAATTTTTGGCAAAATAGCCACCAG
GATGAAAGAAACCGCGGACTCCGTGTCCGAAAAGGTGATGGAAGTGTACG
GCCATCTCGTACAGAATCCCACGTACACGCGACGGTGCATCGAGAAGGCG
AGTCCCCCCACCGTGACGAGTGACGCCATCCTCGACGCCCTGACCGCCAA
GCACCCACAGACCCGCTACGTGGTTGCCAACGTAGACGGCCTGTCCGCGA
AAGTCATCGGGTGGATGATATGGATGTTCAACGACCGAATCAAGGACAAG
CTCATCGAGATTTCCCGGCTCAGACAGCGCAAGGCACAGTAAATGATGGG
TATCAGATTCTCTGCTCTCCTCGTCGCGttcctcgcttccatccCGTACC
TCCTCGACCTAGCCACGCGCCGAGAATACCCAGTCCCACCTCCAGAAGGG
GCCGTTGTGGTCACAGGCGCCTCAACTGGCATTGGTGCACATGCTGCCCA
TAGCCTAGCTCGAACAGGCTTCCTTGTTTTTGCCGGTGTTCGGAAGGAAC
TAGACGGAGAGACCTTGAAGGCCGAGGCCCCAACGCTAGAATCTCAGGAA
AATATAGTACCCATCATCCTCGATGTGACGAAGCAAGAGCAGATTGATAA
AGCTGTGCAAACTGTCAGCAGTACATTGGACTctttgggaggaaggcctc
tTGTGGGGCTGGTGAACAACGCCGGCGTGGGCGGGTCAAACAAGCCTGTC
GAGTTTCAGAGCATGGATGACTTGCGCTGGCTTTTTGACGTGAATTTTTT
TGGTgccatcgccaccaccaAGGCATTTTTagccctcctccgtgccaGTA
AAGGGAGGGTCATCAACATCAGCAGCCTGGCCGGTCTGACTGTGGCGCCC
TTCATGACAGACTACTGTGCGAGCAAGTGGGCGTTAGAGGCGTTTTCCGA
CGCCCTGCGCGTTGAAATGGGGGAGCTTGGAGTCTCGGTGTCAGTGGTCG
AGCCGGCCTATGTCACAAGCGCAATTTTTGGCAAAATAGCCACCAGGATG
AAAGAAACCGCGGACTCCGTGTCCGAAAAGGTGATGGAAGTGTACGGCCA
TCTCGTACAGAATCCCACGTACACGCGACGGTGCATCGAGAAGGCGAGTC
CCCCCACCGTGACGAGTGACGCCATCCTCGACGCCCTGACCGCCAAGCAC
CCACAGACCCGCTACGTGGTTGCCAACGTAGACGGCCTGTCCGCGAAAGT
CATCGGGTGGATGATATGGATGTTCAACGACCGAATCAAGGACAAGCTCA
TCGAGATTTCCCGGCTCAGACAGCGCAAGGCACAGTAA

Synonyms

Publications