rna8878, rna8878 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8878
Unique Name	rna8878
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2475
Alignment location	KK037250.1:374688..376004 +

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Properties


Property Name	Value
Product	Uncharacterized protein family UPF0172
Orig transcript id	gnl\|cribi\|Naga_100051g34.8892.mrna
Orig protein id	gnl\|cribi\|Naga_100051g34.8892
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:374688..376004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g34	gene8608	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8878	rna8878-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21853.1	cds8848	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:374688..376004+
coding sequence from alignment at KK037250.1:374688..376004+

mRNA sequence

>rna8878 ID=rna8878|Name=rna8878|organism=Nannochloropsis gaditana|type=mRNA|length=2475bp
ACATCAAACATTGACTCACCTTCAAGGTAGGCAGCGCCTGTAGCTCTACC
ATGGCCCGCCGGTTCTCTATACTTGATACAGGCCTATGATTGTGTGTTTT
GCAACCGAGTTGTGTGAGTCCAGGGAGCCAGCTACTTCTTGTTCTCGCTC
CAAGCAGAGAGCTCAAGCCGTCTCACGGTGATGAAAGGTCCGTTGCGGAT
ATTCATTTTTCTAAAAGGGGGAGAAATGGAGGAATGGCTGGCTCGTAAGA
CGGGACCAGCTACAGAGCAGCACAGCTTAATTAAAGCCCTTCATATTTGC
ACAGTGCTGCATTTTTCCCGGGAGTATGGCTTTGGCCTTGCGCACAGCCC
TGCATGCATCATAAGTGTTGGTCGTGGCCAAATCTTTGCCATGTCGTGTA
TCAAATTGCCGCCCAAAGCGACAGCACGGAAGAATTGAATCTCTCACTGT
ACATAACAGGGAAACTATTTCGTGACTTTGGACATGGCGGCGTCCCGCGC
CGCTGCTGCATTGCAGCCTCGCGGGCCTACGAGCAAGCTAGTGCTAGGGT
GTGGATCAAATGTAGTAGACAAATTCTATCCGATTCGTAGGTGGCCCAAG
GAAGGGACGAAAGGCTACTTTTTGGACGAAAGTATCTGTAGCGCCCGGGT
CGTGGGAGGTGTCACACTGAATCACCTCGTTTGGGCTCGTGCCTTGGGCA
CGCCCACTGGATTGTTGGCCCTACAGGGAACGGATGAGAATGGTGTGGCG
ATCAGGCAGACGTTGGACGACGTAGGTGTGGACACAAGCGCCATAAGGGT
CAGTGAGAAGTTTTCTACCAGCTTAAGCCACATCTTCCCTTCTCCAGGGG
CCGAACGGACGATCTTGATGGCCCCCGCATCCACTGCAAATTTAGACGCG
AAGACAATGGAGCTCGAATTTGGCTCGGTCATCCGGCGCCGCGCGAGCAT
GATCACAACCGAGATCTCTCAAGTGCCCCTCTCAGGTGTGCTCTTCTTGC
TGCACGCCGCGCGGGACGCGGGCTTTCCATCCTTGTTGGACGTGGACATC
AGTCCGGAAGTCGCCCTCGGGCCCGCGCAATTGGGCTCGTCGGCAGAGCT
GATAGAATGCGTCACCTCCGCATCCATGGTCAAGCTGACCGCGGAAGCTG
CAGAAGAGGTGTTAGGCCTGGTAAACCCTAAGCTGAACGGACAGACAGAG
CGAAGCTTGGAAGGGCTGGCGCAGCAATTGGCGGAGGCTTTGCATGCGCG
CTTGTGCGTGGTGACGGATGGGAGCCGAGGTCTCGCGCTGGCCTTGGGCC
GGAGGAAGGCCCAGGATCAAACCTCAGGATCCGGGGGTAGAAGGAAGGCT
GTGCATCCCGTATTGGTGCCGGGGCTTAAAGGCATCTCCTTGGTCGACTT
TACGGGGGCGGGCGACGCGGCTTTTGGTGCAATGGTGGCAAGTTTGCACG
CCCAAGGCTTTCCGGAGACTGCCGACGGCCTTCTGTCCATGGGGAAAGTA
GCGGCGGCTGCAGGTGCTGCGTGCGTGGAGGTGAAAGGTGCGTTGCCCCA
CCCCCAAAAGAGCGTCGCGCGTGTCCTGCAGTTGGCCCCAGAAGCCCAGC
CTCTGGCGGACGCGGCGGCTTTGCTAGACATGGGCGTGAGTCCATCTCCC
GATTCCACCCTGTCCGAGGCCGCGACGGCCCTTGTGGCAGGGGTCAAGCA
ACGGTCTCCCAGCGTTCAAGCCTACGCGCGAAGCCTGGAGGAGGACGTGC
GGGCCCTGAGGACGTTGAGCGCCGGCCTTGCCTTGCACGAGAAGGAGGAC
ACGATCGCACGCGTCGTCGAACTGCTGGCGGCCGCCCACACCACCACCTC
CAAAAAGACGCACATCTACACGAGCGGGATCGGCAAGAGCGGCCTGGTAG
CGGCCCGTCTGGCCTCCTCCTTGCGCTCCATTTCCATCCGGAGCAGTCAC
GTGCCAGCCACCGAGTTCGTCCACGGGGACTTGGGCAGCCTGTCGCGAGG
CGACGTCCTGGTCTGCCTGAGCACGAGTGGAAGGACGAGCGAGCTCATCG
ACGTCACCCGGCGGGTCCGAGCCAAGGGCGTGGACGTGATTGCGATGACG
GCGAACGCGGCCTCTCCCTTGGCCCAGCTTGCGGACGTGCACCTGCATGC
CAAGAGCGCCGAGCCTCTGGGCAAGGTGCCCGCCCGCTCCATCGTCGTCC
AGGAGGCGGTGAGCAACGCGATCATCTCCGCGATCGCCCAAGCTACCTCC
CTGACCATGGCCCAGTTCTTGGACAACCACCCCGGGGGCAGCATCGGTCA
GTCCTCCTTAGCCACCCCTTCCTCCACCACCACAGCTCCCGCTGCTCGCG
CCTCCTCCTCCTCCCCATCCCCCCCCTAGCTCCTCTAAAAGCCTGTGCGG
CCTGGGCTGGTGGTGTAGTAGTTAAGGAAAAAAATCAAAGCTTGTAGCCC
GGACAGAGTCGGGCACGGTGCCACC

protein sequence of rna8878

>rna8878-protein ID=rna8878-protein|Name=rna8878|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MVELQALPTLKILLHTAKYPHAEVCGLLLGPVNDVPIIDDAVPLFHHITV
GPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELA
SHRPDAILLRVKNEALSSRAAVPFEVLPLPGVEGAPKVVPVTVSPRGIQA
FDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVGDFL

mRNA from alignment at KK037250.1:374688..376004+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8878 ID=rna8878|Name=rna8878|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp|location=Sequence derived from alignment at KK037250.1:374688..376004+ (Nannochloropsis gaditana)
CCCTGTTATGTACAGTGAGAGATTCAATTCTTCCGTGCTGTCGCTTTGGG
CGGCAATTTGATACACGACATGGCAAAGATTTGGCCACGACCAACACTTA
TGATGCATGCAGGGCTGTGCGCAAGGCCAAAGCCATACTCCCGGGAAAAA
TGCAGCACTGTGCAAATATGAAGGGCTTTAATTAAGCTGTGCTGCTCTGT
AGCTGGTCCCGTCTTACGAGCCAGCcattcctccatttctccccctttta
GAAAAATGAATATCCGCAACGGACCTTTCATCACCGTGAGACGGCTTGAG
CTCTCTGCTTGGAGCGAGAACAAGAAGTAGCTGGCTCCCTGGACTCACAC
AACTCGGTTGCAAAACACACAATCATAGGCCTGTATCAAGTATAGAGAAC
CGGCGGGCCATGGTAGAGCTACAGGCGCTGCCTACCTTGAAGGTGAGTCA
ATGTTTGATGTAGAGAGCATAAGGcccgacctccccttccttcggcCCTT
TTGCCCCTCAAGTAAATCTCTTTCCCAATGTGTCTTCGAACAAACGTAGA
TATTGCTGCATACTGCTAAGTACCCCCATGCCGAGGTCTGTGGCCTCTTG
CTGGGACCGGTGAATGTAAGTTTGTTATGATGCTTTCCCGGCACTCTATC
TATCTATGTTGCAATTTTGGGGCATAGTAACTCACAGCGTCCCCGGCTCC
CTCAATCCTTTTGTTATCCATTGTAGGATGTGCCTATCATTGACGACGCT
GTACCACTTTTTCATCACATCACTGTTGGTCCTTTGATGGAGACGGCTTT
CCTGATGGTGGAGCAGTATGCCAACAGCGAGGGGAAGCGTCTTGCCGGTT
TCTACCATGCTGCGGCGCAAGCCAATGAGCCGGAAACGCATCCTTTAATG
GTGACCTTGGTAGGCAAAGAACTAGCATCTCACCGCCCGGACGCGATACT
GCTCCGTGTGAAGAATGAGGCGCTTTCCAGTCGCGCTGCTGTTCCGTTCG
AggttctccctctccctggtgTGGAAGGCGCACCGAAAGTAGTGCCGGTG
ACAGTTTCTCCGCGAGGCATTCAGGCTTTTGATCAAGTCAGTGGGAACGG
GAAGTTTGCTGCGTGTCGGAGCCTGGTGGATATGGACGAACATTTCGACG
ATGCGAGGCGTGACTTCAGAAATCGCCACGTCGGCGACTTTTTGTagcac
aaggaggaagactcgAAGCCATGTCCACATGTAGCAAGGTATGCTGCCAA
TACGATGAGAAAGGGCCATGACATGCTGAAAGTAGCATAGTACAAATAGA
ACGCGATGCTTTGCCCA

Coding sequence (CDS) from alignment at KK037250.1:374688..376004+

>rna8878 ID=rna8878|Name=rna8878|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at KK037250.1:374688..376004+ (Nannochloropsis gaditana)
ATGGTAGAGCTACAGGCGCTGCCTACCTTGAAGATATTGCTGCATACTGC
TAAGTACCCCCATGCCGAGGTCTGTGGCCTCTTGCTGGGACCGGTGAATG
ATGTGCCTATCATTGACGACGCTGTACCACTTTTTCATCACATCACTGTT
GGTCCTTTGATGGAGACGGCTTTCCTGATGGTGGAGCAGTATGCCAACAG
CGAGGGGAAGCGTCTTGCCGGTTTCTACCATGCTGCGGCGCAAGCCAATG
AGCCGGAAACGCATCCTTTAATGGTGACCTTGGTAGGCAAAGAACTAGCA
TCTCACCGCCCGGACGCGATACTGCTCCGTGTGAAGAATGAGGCGCTTTC
CAGTCGCGCTGCTGTTCCGTTCGAggttctccctctccctggtgTGGAAG
GCGCACCGAAAGTAGTGCCGGTGACAGTTTCTCCGCGAGGCATTCAGGCT
TTTGATCAAGTCAGTGGGAACGGGAAGTTTGCTGCGTGTCGGAGCCTGGT
GGATATGGACGAACATTTCGACGATGCGAGGCGTGACTTCAGAAATCGCC
ACGTCGGCGACTTTTTGTagATGGTAGAGCTACAGGCGCTGCCTACCTTG
AAGATATTGCTGCATACTGCTAAGTACCCCCATGCCGAGGTCTGTGGCCT
CTTGCTGGGACCGGTGAATGATGTGCCTATCATTGACGACGCTGTACCAC
TTTTTCATCACATCACTGTTGGTCCTTTGATGGAGACGGCTTTCCTGATG
GTGGAGCAGTATGCCAACAGCGAGGGGAAGCGTCTTGCCGGTTTCTACCA
TGCTGCGGCGCAAGCCAATGAGCCGGAAACGCATCCTTTAATGGTGACCT
TGGTAGGCAAAGAACTAGCATCTCACCGCCCGGACGCGATACTGCTCCGT
GTGAAGAATGAGGCGCTTTCCAGTCGCGCTGCTGTTCCGTTCGAggttct
ccctctccctggtgTGGAAGGCGCACCGAAAGTAGTGCCGGTGACAGTTT
CTCCGCGAGGCATTCAGGCTTTTGATCAAGTCAGTGGGAACGGGAAGTTT
GCTGCGTGTCGGAGCCTGGTGGATATGGACGAACATTTCGACGATGCGAG
GCGTGACTTCAGAAATCGCCACGTCGGCGACTTTTTGTagATGGTAGAGC
TACAGGCGCTGCCTACCTTGAAGATATTGCTGCATACTGCTAAGTACCCC
CATGCCGAGGTCTGTGGCCTCTTGCTGGGACCGGTGAATGATGTGCCTAT
CATTGACGACGCTGTACCACTTTTTCATCACATCACTGTTGGTCCTTTGA
TGGAGACGGCTTTCCTGATGGTGGAGCAGTATGCCAACAGCGAGGGGAAG
CGTCTTGCCGGTTTCTACCATGCTGCGGCGCAAGCCAATGAGCCGGAAAC
GCATCCTTTAATGGTGACCTTGGTAGGCAAAGAACTAGCATCTCACCGCC
CGGACGCGATACTGCTCCGTGTGAAGAATGAGGCGCTTTCCAGTCGCGCT
GCTGTTCCGTTCGAggttctccctctccctggtgTGGAAGGCGCACCGAA
AGTAGTGCCGGTGACAGTTTCTCCGCGAGGCATTCAGGCTTTTGATCAAG
TCAGTGGGAACGGGAAGTTTGCTGCGTGTCGGAGCCTGGTGGATATGGAC
GAACATTTCGACGATGCGAGGCGTGACTTCAGAAATCGCCACGTCGGCGA
CTTTTTGTag

Synonyms

Publications