EWM21853.1, cds8848 (CDS) Nannochloropsis gaditana

Overview
NameEWM21853.1
Unique Namecds8848
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:375097..375129 +
Alignment locationKK037250.1:375237..375302 +
Alignment locationKK037250.1:375414..375884 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21853.1
ProductUncharacterized protein family UPF0172
Orig transcript idgnl|cribi|Naga_100051g34.8892.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:375097..375129 +
KK037250.1supercontigKK037250.1:375237..375302 +
KK037250.1supercontigKK037250.1:375414..375884 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005366UPF0172
Homology
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|585102195|gb|EWM21853.1| (Uncharacterized protein family UPF0172 [Nannochloropsis gaditana])

HSP 1 Score: 385.185 bits (988), Expect = 1.976e-135
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MVELQALPTLKILLHTAKYPHAEVCGLLLGPVNDVPIIDDAVPLFHHITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAVPFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVGDFL 189
            MVELQALPTLKILLHTAKYPHAEVCGLLLGPVNDVPIIDDAVPLFHHITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAVPFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVGDFL
Sbjct:    1 MVELQALPTLKILLHTAKYPHAEVCGLLLGPVNDVPIIDDAVPLFHHITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAVPFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVGDFL 189          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|584082191|ref|XP_006760919.1| (PREDICTED: ER membrane protein complex subunit 9 [Myotis davidii] >gi|432106946|gb|ELK32467.1| UPF0172 protein FAM158A [Myotis davidii])

HSP 1 Score: 99.3673 bits (246), Expect = 1.460e-22
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHV 185
            VE+ A    K+ LH A+YPHA V GLLL P     +   + D VPLFH H+ +  ++E A   VE +    G  LAG+YHA A   +    PL + + G+ +A   PDA+L+ + N+ L S+  V P  VL   G+   PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ +
Sbjct:    4 VEISARAYGKMCLHAARYPHAAVNGLLLAPAPQSGECLCLTDCVPLFHSHLALSVMLEVALHQVEMWGAQAGLVLAGYYHANAALGDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVSQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGALLESRAQQHLVDFDCHLDDIRQDWTNQQL 191          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|31542298|ref|NP_057133.2| (ER membrane protein complex subunit 9 isoform a [Homo sapiens] >gi|397475407|ref|XP_003809130.1| PREDICTED: ER membrane protein complex subunit 9 [Pan paniscus] >gi|530403899|ref|XP_005267778.1| PREDICTED: ER membrane protein complex subunit 9 isoform X1 [Homo sapiens] >gi|675700562|ref|XP_008959475.1| PREDICTED: ER membrane protein complex subunit 9 [Pan paniscus] >gi|116241305|sp|Q9Y3B6.3|EMC9_HUMAN RecName: Full=ER membrane protein complex subunit 9; AltName: Full=Protein FAM158A >gi|12803345|gb|AAH02491.1| Family with sequence similarity 158, member A [Homo sapiens] >gi|119586507|gb|EAW66103.1| chromosome 14 open reading frame 122, isoform CRA_a [Homo sapiens] >gi|119586508|gb|EAW66104.1| chromosome 14 open reading frame 122, isoform CRA_a [Homo sapiens] >gi|649108580|gb|AIC51365.1| FAM158A, partial [synthetic construct] >gi|1147677537|emb|SJX29276.1| unnamed protein product, partial [Human ORFeome Gateway entry vector])

HSP 1 Score: 98.5969 bits (244), Expect = 2.808e-22
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVG 186
            VE+ AL  +K+ LH A+YPHA V GL L P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  N+    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+   PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ + 
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRLN 192          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|641732633|ref|XP_008156689.1| (PREDICTED: ER membrane protein complex subunit 9 [Eptesicus fuscus])

HSP 1 Score: 98.2117 bits (243), Expect = 3.113e-22
Identity = 65/189 (34.39%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHV 185
            VE+ A   +K+ LH A+YPHA V GLLL P     +   + D VPLFH H+ +  ++E A   V+ +    G  LAG+YHA A   +    PL + + G+ +A   PDA+L+ + N+ L S+  V P  VL   G+   PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ +
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPQSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVLAGYYHANAALGDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVSQPHVPPVIVLENQGLCWVPKDKNLVMWRDWEESRQMVGALLESRAQQHLVDFDCHLDDIRQDWTNQQL 191          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|478493807|ref|XP_004421253.1| (PREDICTED: ER membrane protein complex subunit 9 [Ceratotherium simum simum])

HSP 1 Score: 98.2117 bits (243), Expect = 3.147e-22
Identity = 69/193 (35.75%), Postives = 104/193 (53.89%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSG---NGKFAACRSLVDMDEHFDDARRDFRNRHVG 186
            VE+ A   +K+ LH A+YPHA V GLLL PV    D   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  ++    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+   PK   + V  R  +   Q+ G   +G+  A + LVD D H DD R+D+ N+ + 
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPVPRSEDCLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQPHVPPVIVLENHGLRWVPKDKNL-VMWRDWEESRQMVGTLLDGR--AYQHLVDFDCHLDDIRQDWTNQQLN 192          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|1124021089|ref|XP_019570016.1| (PREDICTED: ER membrane protein complex subunit 9 isoform X6 [Rhinolophus sinicus])

HSP 1 Score: 98.2117 bits (243), Expect = 3.653e-22
Identity = 64/189 (33.86%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHV 185
            VE+ A   +K+ LH A+YPHA V GLLL P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  N+    PL + + G+ +A   PDA+L+ + N+ L  ++ V P  VL   G    PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ +
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPASGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAALNDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQSHVPPVIVLENHGARWVPKDKNLVMWRDWEESRQMVGALLEGRAYQHLVDFDCHLDDIRQDWTNQQL 191          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|344298734|ref|XP_003421046.1| (PREDICTED: ER membrane protein complex subunit 9 [Loxodonta africana])

HSP 1 Score: 97.8265 bits (242), Expect = 4.975e-22
Identity = 64/190 (33.68%), Postives = 100/190 (52.63%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGP---VNDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVG 186
            VE+ A   +K+ LH A+YPHA V GLLL P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  ++    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+  APK   + +     ++   V    +  A + LVD D H DD R+D+ N+ + 
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPRTGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQGGLVVAGYYHANAALDDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENHGLRWAPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDFDSHLDDIRQDWTNQQLN 192          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|1147273888|ref|XP_020018528.1| (ER membrane protein complex subunit 9 isoform X1 [Castor canadensis])

HSP 1 Score: 97.8265 bits (242), Expect = 5.378e-22
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRS---LVDMDEHFDDARRDFRNRHVG 186
            VE+ A   +K+ LH A+YPHA V GLLL P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  ++    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+   PK   + +     ++   V   G    CR+   LVD D H DD R+D+ N+ + 
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGTQAGLVVAGYYHANAALDDQSPGPLALKIAGR-IAEFFPDAVLIMLDNKKLVPQPRVPPVIVLESQGLRWVPKDKNLVMWRDWEESRQMV---GALLECRAHQHLVDFDCHLDDIRQDWTNQQLN 192          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|297694781|ref|XP_002824649.1| (PREDICTED: ER membrane protein complex subunit 9 [Pongo abelii] >gi|686744970|ref|XP_009247241.1| PREDICTED: ER membrane protein complex subunit 9 [Pongo abelii])

HSP 1 Score: 97.8265 bits (242), Expect = 5.553e-22
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVG 186
            VE+ AL  +K+ LH A+YPHA V GL L P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  N+    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+   PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ + 
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLCWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRLN 192          
BLAST of EWM21853.1 vs. NCBI_GenBank
Match: gi|34978962|gb|AAQ83690.1| (CGI-112 protein [Homo sapiens])

HSP 1 Score: 97.0561 bits (240), Expect = 8.966e-22
Identity = 64/189 (33.86%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    2 VELQALPTLKILLHTAKYPHAEVCGLLLGPV---NDVPIIDDAVPLFH-HITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAV-PFEVLPLPGVEGAPKVVPVTVSPRGIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHV 185
            VE+ AL  +K+ LH A+YPHA V GL L P     +   + D VPLFH H+ +  ++E A   V+ +    G  +AG+YHA A  N+    PL + + G+ +A   PDA+L+ + N+ L  +  V P  VL   G+   PK   + +     ++   V    +  A + LVD D H DD R+D+ N+ +
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGEGLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGR-IAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRL 191          
The following BLAST results are available for this feature:
BLAST of EWM21853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102195|gb|EWM21853.1|1.976e-135100.00Uncharacterized protein family UPF0172 [Nannochlor... [more]
gi|584082191|ref|XP_006760919.1|1.460e-2234.92PREDICTED: ER membrane protein complex subunit 9 [... [more]
gi|31542298|ref|NP_057133.2|2.808e-2233.68ER membrane protein complex subunit 9 isoform a [H... [more]
gi|641732633|ref|XP_008156689.1|3.113e-2234.39PREDICTED: ER membrane protein complex subunit 9 [... [more]
gi|478493807|ref|XP_004421253.1|3.147e-2235.75PREDICTED: ER membrane protein complex subunit 9 [... [more]
gi|1124021089|ref|XP_019570016.1|3.653e-2233.86PREDICTED: ER membrane protein complex subunit 9 i... [more]
gi|344298734|ref|XP_003421046.1|4.975e-2233.68PREDICTED: ER membrane protein complex subunit 9 [... [more]
gi|1147273888|ref|XP_020018528.1|5.378e-2233.68ER membrane protein complex subunit 9 isoform X1 [... [more]
gi|297694781|ref|XP_002824649.1|5.553e-2233.68PREDICTED: ER membrane protein complex subunit 9 [... [more]
gi|34978962|gb|AAQ83690.1|8.966e-2233.86CGI-112 protein [Homo sapiens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8878rna8878Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications