rna8874, rna8874 (mRNA) Nannochloropsis gaditana

Overview
Namerna8874
Unique Namerna8874
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1325
Alignment locationKK037250.1:363257..364311 +

Link to JBrowse

Properties
Property NameValue
Productlight tctex-type 1
Orig transcript idgnl|cribi|Naga_100051g30.8883.mrna
Orig protein idgnl|cribi|Naga_100051g30.8883
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:363257..364311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g30gene8604Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8874rna8874-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21844.1cds8844Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8874 ID=rna8874|Name=rna8874|organism=Nannochloropsis gaditana|type=mRNA|length=1325bp
TCCTCGTCGCAGGGCGCAAGGGAAAGAATAGAGGAAAATGGAGGTGGGCG
CGGCGGCAGAGTGGGTGTCCAAGGGCATGATGATCGCTTTCGCCTTGAAT
CTTCCCCTTCCCGCCCCCCACTGACTGGATTCTTGTCGCGCACCTGCATG
GAGCCTCAGCGGCTAATGCGGGAGCGCGTCCTCCTTGGCGCGCGTGCGCG
ACAAAAGTTTGTGAAGGCAGCATCCGTGTCTCTTTTCCACCAGACTGTGG
ATGACCGTTCTGTCTCATCTTTTTCTTTTTCCAAACCGATTCAGGCATTT
ATCCCCTAAACTATGAAGACCTACTGCGCTGTGTTCGGAGCTGTCTCGCT
TGCGGTGGCATCTCATGCATTTATGGTGGGCAGCCCGCTGACAGGGGTTT
CCAAGGCTCCTGCTAGCTCCTCCACTGTCCGTATGGCTGTCGCCTTGCCC
CCTTTGCCGTTTGAGGACACGGCCCTGGAACCTCTCATTTCGAAGCGCAC
GCTAGACATTCACCACGGGAAGCACCACGCCAAGTATGTGACGGTCACGA
ACGAGATGATCAAGGGCACTGATCTGGAGAACGCGTCCCTGGAGGAGATT
GTGAAAGCGGCCAAAGGTAAGAATCAAGGATTGTTCAACAATGCGGCGCA
GGTCTGGAACCATAACTTCTACTGGAACTGCATCAAGCCCAACGGGGGGG
GGAAACCCACGGGGAAGGTGGCGGCCTTGATCGACCGCGACCTGGGCGGA
TTCGAGGCTTTCAGGAAGCAGTTCGCTGCGGACTCGAACGGGAACTTTGG
TAGCGGCTGGACTTGGCTGGCCATGGACGGGGACAAGCTGAAGATTGTGA
AGACAAGCAACGCGGACTTGCCTCTCACGCAGGGGATGACGCCGTTGCTC
GTGATCGATGTGTGGGAGCACGCGTACTATCTCGATGTGCAGAACGTGCG
TGCGCAGTACGTGGACAACTTCCTGGACAAACTGGTCAACTGGGACTTTG
TGAATGCTAATCTGGCCTGAGCCTGTGACGGTGTTTTGTAAGTCTATCTT
CCTATCGAGTCTGTCACGATTCTGGGATCAGGCGGAGCCTCGATAAATCG
GAGCAATGGCATGAGAGATGCTCTTCTTATGAAGAGTCATTAGGCACAAA
CCTTTAGGAAGGGCTTAGAAGTTTGCACGAGCAAAGAGACGCGTGGGATC
GTGATGGCACGAAATCGTTAATGAAGGCTGTGAGAAGGTGAATGATTGAT
TGACTTTTTGCATAGCATGCTGATTACATGAAGGGAATGAAACAAATTGA
TGACAAGAAAGAGTTTGCAAGAGCA
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protein sequence of rna8874

>rna8874-protein ID=rna8874-protein|Name=rna8874|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVA
LNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIV
TIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTED
TAGV
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mRNA from alignment at KK037250.1:363257..364311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8874 ID=rna8874|Name=rna8874|organism=Nannochloropsis gaditana|type=mRNA|length=1055bp|location=Sequence derived from alignment at KK037250.1:363257..364311+ (Nannochloropsis gaditana)
TTTAGGTTTCGTCTGAGCCTCGTATACTCGCATCAAACGCGTCTCTAAGC
GGCAGGCTCCGATTTCGACGCAAACCCATCGTCAATTTTTCGATGCTTTT
AATTTCTCACTTCTTTTTCCAAGAGTCGTCTATGACAAAGGTAGAAAGTT
gtcatttcttcttcacctGCACCCAACATTTTGTGAAGTGGGTCAAAGAA
GTTCGGTGACTCGTTTTGCTTTTATCATCGGTGGTCCGCATTGGTGAGAG
AGCATTCGAAGAGATGCATTTATCAGCTTCACTTTGATAACCTTATATAT
CTTGATAGAGATGACTTCGCAGAATGACCTATTGCATGAAATCAATGATA
TCGTACAAAGCAGTGTGGAGGCCATACTGGGCACCTCCATGTATTCGTCA
AACAAGGTATGCTAGGGGCGTCATTGTAGGGTTGTATCCAAACCCACAAG
TCCTGACACGAAAAGTTTACATTTGTTGCCGCTTCAGGTCAATGACTGGG
TTCAAACAATACTGGATACCTGTCTACGAGAATTTGTGGCGCTTAATCGA
CCTTGCAAGTATTTGCTCACCTCTGTGCTGTCTCAAAAAAATGGAGCGGG
CTTTAGGTCGATCTCATCGGAATTTTGGGATGATCGGTCGGATTGCAGCT
ATGTTGTGCACTGGGAAAACGAGCATATGCATTGCATTGTTACAATATAT
GTCATTGCTTTGGATATAAATGGGCCAATCCTGAGTGGTGACGGTGCGAC
AGCTGCTGGAGCAACGGCCAAACAACTATCGCAAGCCGTAGAGAGATGCA
GTACTGTCTATTTAGACGATGAAAAAGACCAAACTGAAGATACAGCCGGA
GTGTGATAGTAAATGACATTTTTTTGCATGTGCTGTCGTACAAATTTATG
TAAAAGAAACTTCATGGACATCAAGTTTTGTCTTCCAAATGCATCTGTCA
ATTGCGTCCTCGAAAGTTTATGGCCTACTTTGCGACTTTTTGTTGGTCTT
TTGTACCACATTGATAAGAAGTTTTGTCCTGTGAAGCAAGATAGCCATAC
ATGGA
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Coding sequence (CDS) from alignment at KK037250.1:363257..364311+

>rna8874 ID=rna8874|Name=rna8874|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at KK037250.1:363257..364311+ (Nannochloropsis gaditana)
ATGACTTCGCAGAATGACCTATTGCATGAAATCAATGATATCGTACAAAG
CAGTGTGGAGGCCATACTGGGCACCTCCATGTATTCGTCAAACAAGGTCA
ATGACTGGGTTCAAACAATACTGGATACCTGTCTACGAGAATTTGTGGCG
CTTAATCGACCTTGCAAGTATTTGCTCACCTCTGTGCTGTCTCAAAAAAA
TGGAGCGGGCTTTAGGTCGATCTCATCGGAATTTTGGGATGATCGGTCGG
ATTGCAGCTATGTTGTGCACTGGGAAAACGAGCATATGCATTGCATTGTT
ACAATATATGTCATTGCTTTGGATATAAATGGGCCAATCCTGAGTGGTGA
CGGTGCGACAGCTGCTGGAGCAACGGCCAAACAACTATCGCAAGCCGTAG
AGAGATGCAGTACTGTCTATTTAGACGATGAAAAAGACCAAACTGAAGAT
ACAGCCGGAGTGTGAATGACTTCGCAGAATGACCTATTGCATGAAATCAA
TGATATCGTACAAAGCAGTGTGGAGGCCATACTGGGCACCTCCATGTATT
CGTCAAACAAGGTCAATGACTGGGTTCAAACAATACTGGATACCTGTCTA
CGAGAATTTGTGGCGCTTAATCGACCTTGCAAGTATTTGCTCACCTCTGT
GCTGTCTCAAAAAAATGGAGCGGGCTTTAGGTCGATCTCATCGGAATTTT
GGGATGATCGGTCGGATTGCAGCTATGTTGTGCACTGGGAAAACGAGCAT
ATGCATTGCATTGTTACAATATATGTCATTGCTTTGGATATAAATGGGCC
AATCCTGAGTGGTGACGGTGCGACAGCTGCTGGAGCAACGGCCAAACAAC
TATCGCAAGCCGTAGAGAGATGCAGTACTGTCTATTTAGACGATGAAAAA
GACCAAACTGAAGATACAGCCGGAGTGTGA
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Synonyms
Publications