EWM21844.1, cds8844 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|585102186|gb|EWM21844.1| (light tctex-type 1 [Nannochloropsis gaditana]) HSP 1 Score: 320.087 bits (819), Expect = 7.503e-111 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 1 MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV 154
MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV
Sbjct: 1 MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV 154
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1101655704|ref|XP_018944927.1| (PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >gi|1101655706|ref|XP_018944934.1| PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >gi|966647062|gb|KTF81972.1| hypothetical protein cypCar_00045612 [Cyprinus carpio]) HSP 1 Score: 105.145 bits (261), Expect = 1.872e-26 Identity = 42/101 (41.58%), Postives = 74/101 (73.27%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E++ IV+ S+EA++G + Y +VN WV ++++ CL + L++P KY++T ++ QKNGAG +S SS FWD+ +D S V WEN+H++CIV+++ +A+
Sbjct: 13 VVDEVSSIVKESLEAVIGRNPYEQKRVNQWVSSVVEQCLGQLSKLSKPFKYIVTCIIMQKNGAGLQSASSCFWDNTTDGSCTVRWENKHLYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|209413786|ref|NP_001129255.1| (dynein light chain Tctex-type 1 [Danio rerio]) HSP 1 Score: 105.145 bits (261), Expect = 1.914e-26 Identity = 42/101 (41.58%), Postives = 73/101 (72.28%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E++ IV+ S+EA++G +MY N+V+ W ++ + CL + L +P KY++T ++ QKNGAG +S SS FWD+ +D S V WEN+H++CIV+++ +A+
Sbjct: 13 IVDEVSSIVKESLEAVIGRNMYEHNRVSQWTSSVAEQCLGQLSKLGKPFKYIVTCIIMQKNGAGLQSASSCFWDNTTDGSCTVRWENKHLYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1126170708|ref|XP_019617363.1| (PREDICTED: dynein light chain Tctex-type 1 [Branchiostoma belcheri]) HSP 1 Score: 104.375 bits (259), Expect = 3.558e-26 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ SVE +G + Y NKVN W +++ CL + LN+P KY++T V+ QKNGAG + SS FWD+ +D S V WEN+ M+CIV+++ +A+
Sbjct: 13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLNKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|260835212|ref|XP_002612603.1| (hypothetical protein BRAFLDRAFT_78772 [Branchiostoma floridae] >gi|229297981|gb|EEN68612.1| hypothetical protein BRAFLDRAFT_78772 [Branchiostoma floridae]) HSP 1 Score: 103.99 bits (258), Expect = 4.325e-26 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ SVE +G + Y NKVN W +++ CL + LN+P KY++T V+ QKNGAG + SS FWD+ +D S V WEN+ M+CIV+++ +A+
Sbjct: 5 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLNKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 105
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1005433421|ref|XP_015754259.1| (PREDICTED: dynein light chain Tctex-type 1 [Acropora digitifera] >gi|1005490970|ref|XP_015748167.1| PREDICTED: dynein light chain Tctex-type 1 [Acropora digitifera]) HSP 1 Score: 103.219 bits (256), Expect = 1.033e-25 Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ SVE +G + Y NKVN W +++ CL + L +P KY++T V+ QKNGAG + SS FWD+ SD S V WEN+ M+CIV+++ +A+
Sbjct: 13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTSDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1176110619|ref|XP_020626286.1| (dynein light chain Tctex-type 1 [Orbicella faveolata]) HSP 1 Score: 103.219 bits (256), Expect = 1.216e-25 Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ SVE +G + Y NKVN W +++ CL + L +P KY++T V+ QKNGAG + SS FWD+ SD S V WEN+ M+CIV+++ +A+
Sbjct: 13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTSDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|72009103|ref|XP_783725.1| (PREDICTED: dynein light chain Tctex-type 1 [Strongylocentrotus purpuratus] >gi|3336986|dbj|BAA31751.1| outer arm dynein LC3 [Heliocidaris crassispina]) HSP 1 Score: 102.834 bits (255), Expect = 1.578e-25 Identity = 42/101 (41.58%), Postives = 69/101 (68.32%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ +VE +G S Y NKVN W +++ CL + L +P KY++T V+ QKNGAG + SS FWD+ +D S V WEN+ M+CIV+++ +A+
Sbjct: 13 VVDEVSNIIKEAVEGTIGGSAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNSTDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|828211816|ref|XP_012558785.1| (PREDICTED: dynein light chain Tctex-type 1 [Hydra vulgaris]) HSP 1 Score: 102.064 bits (253), Expect = 2.902e-25 Identity = 41/101 (40.59%), Postives = 70/101 (69.31%), Query Frame = 0
Query: 7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
++ E+++I++ S+E +G + Y NKVN W ++++ CL + L +P KY++T V+ QKNGAG + SS +WD+ SD S V WEN+ M+CIV+++ +A+
Sbjct: 13 VVEEVSNIIKESIEGAIGGNAYQHNKVNQWTSSVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCYWDNGSDGSCTVRWENKTMYCIVSVFGLAI 113
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1207911855|ref|XP_021339129.1| (dynein light chain Tctex-type 1 [Mizuhopecten yessoensis] >gi|1205908527|gb|OWF54815.1| Dynein light chain Tctex-type 1 [Mizuhopecten yessoensis]) HSP 1 Score: 101.679 bits (252), Expect = 5.276e-25 Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 0
Query: 10 EINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
E+ +I++ S+E +G + Y NKVN W +++ CL + L +P KY++T V+ QKNGAG + SS FWD+ +D S V WEN+ M+CIV+++ +A+
Sbjct: 16 EVTNIIKESIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113 The following BLAST results are available for this feature:
BLAST of EWM21844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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