EWM21844.1, cds8844 (CDS) Nannochloropsis gaditana

Overview
NameEWM21844.1
Unique Namecds8844
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:363567..363662 +
Alignment locationKK037250.1:363744..364112 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21844.1
Productlight tctex-type 1
Orig transcript idgnl|cribi|Naga_100051g30.8883.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:363567..363662 +
KK037250.1supercontigKK037250.1:363744..364112 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Homology
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|585102186|gb|EWM21844.1| (light tctex-type 1 [Nannochloropsis gaditana])

HSP 1 Score: 320.087 bits (819), Expect = 7.503e-111
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV 154
            MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV
Sbjct:    1 MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATAAGATAKQLSQAVERCSTVYLDDEKDQTEDTAGV 154          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1101655704|ref|XP_018944927.1| (PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >gi|1101655706|ref|XP_018944934.1| PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >gi|966647062|gb|KTF81972.1| hypothetical protein cypCar_00045612 [Cyprinus carpio])

HSP 1 Score: 105.145 bits (261), Expect = 1.872e-26
Identity = 42/101 (41.58%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E++ IV+ S+EA++G + Y   +VN WV ++++ CL +   L++P KY++T ++ QKNGAG +S SS FWD+ +D S  V WEN+H++CIV+++ +A+
Sbjct:   13 VVDEVSSIVKESLEAVIGRNPYEQKRVNQWVSSVVEQCLGQLSKLSKPFKYIVTCIIMQKNGAGLQSASSCFWDNTTDGSCTVRWENKHLYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|209413786|ref|NP_001129255.1| (dynein light chain Tctex-type 1 [Danio rerio])

HSP 1 Score: 105.145 bits (261), Expect = 1.914e-26
Identity = 42/101 (41.58%), Postives = 73/101 (72.28%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E++ IV+ S+EA++G +MY  N+V+ W  ++ + CL +   L +P KY++T ++ QKNGAG +S SS FWD+ +D S  V WEN+H++CIV+++ +A+
Sbjct:   13 IVDEVSSIVKESLEAVIGRNMYEHNRVSQWTSSVAEQCLGQLSKLGKPFKYIVTCIIMQKNGAGLQSASSCFWDNTTDGSCTVRWENKHLYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1126170708|ref|XP_019617363.1| (PREDICTED: dynein light chain Tctex-type 1 [Branchiostoma belcheri])

HSP 1 Score: 104.375 bits (259), Expect = 3.558e-26
Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ SVE  +G + Y  NKVN W   +++ CL +   LN+P KY++T V+ QKNGAG  + SS FWD+ +D S  V WEN+ M+CIV+++ +A+
Sbjct:   13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLNKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|260835212|ref|XP_002612603.1| (hypothetical protein BRAFLDRAFT_78772 [Branchiostoma floridae] >gi|229297981|gb|EEN68612.1| hypothetical protein BRAFLDRAFT_78772 [Branchiostoma floridae])

HSP 1 Score: 103.99 bits (258), Expect = 4.325e-26
Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ SVE  +G + Y  NKVN W   +++ CL +   LN+P KY++T V+ QKNGAG  + SS FWD+ +D S  V WEN+ M+CIV+++ +A+
Sbjct:    5 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLNKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 105          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1005433421|ref|XP_015754259.1| (PREDICTED: dynein light chain Tctex-type 1 [Acropora digitifera] >gi|1005490970|ref|XP_015748167.1| PREDICTED: dynein light chain Tctex-type 1 [Acropora digitifera])

HSP 1 Score: 103.219 bits (256), Expect = 1.033e-25
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ SVE  +G + Y  NKVN W   +++ CL +   L +P KY++T V+ QKNGAG  + SS FWD+ SD S  V WEN+ M+CIV+++ +A+
Sbjct:   13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTSDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1176110619|ref|XP_020626286.1| (dynein light chain Tctex-type 1 [Orbicella faveolata])

HSP 1 Score: 103.219 bits (256), Expect = 1.216e-25
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ SVE  +G + Y  NKVN W   +++ CL +   L +P KY++T V+ QKNGAG  + SS FWD+ SD S  V WEN+ M+CIV+++ +A+
Sbjct:   13 VVDEVSNIIKESVEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTSDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|72009103|ref|XP_783725.1| (PREDICTED: dynein light chain Tctex-type 1 [Strongylocentrotus purpuratus] >gi|3336986|dbj|BAA31751.1| outer arm dynein LC3 [Heliocidaris crassispina])

HSP 1 Score: 102.834 bits (255), Expect = 1.578e-25
Identity = 42/101 (41.58%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ +VE  +G S Y  NKVN W   +++ CL +   L +P KY++T V+ QKNGAG  + SS FWD+ +D S  V WEN+ M+CIV+++ +A+
Sbjct:   13 VVDEVSNIIKEAVEGTIGGSAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNSTDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|828211816|ref|XP_012558785.1| (PREDICTED: dynein light chain Tctex-type 1 [Hydra vulgaris])

HSP 1 Score: 102.064 bits (253), Expect = 2.902e-25
Identity = 41/101 (40.59%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    7 LLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            ++ E+++I++ S+E  +G + Y  NKVN W  ++++ CL +   L +P KY++T V+ QKNGAG  + SS +WD+ SD S  V WEN+ M+CIV+++ +A+
Sbjct:   13 VVEEVSNIIKESIEGAIGGNAYQHNKVNQWTSSVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCYWDNGSDGSCTVRWENKTMYCIVSVFGLAI 113          
BLAST of EWM21844.1 vs. NCBI_GenBank
Match: gi|1207911855|ref|XP_021339129.1| (dynein light chain Tctex-type 1 [Mizuhopecten yessoensis] >gi|1205908527|gb|OWF54815.1| Dynein light chain Tctex-type 1 [Mizuhopecten yessoensis])

HSP 1 Score: 101.679 bits (252), Expect = 5.276e-25
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 0
Query:   10 EINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIAL 107
            E+ +I++ S+E  +G + Y  NKVN W   +++ CL +   L +P KY++T V+ QKNGAG  + SS FWD+ +D S  V WEN+ M+CIV+++ +A+
Sbjct:   16 EVTNIIKESIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDNTTDGSCTVRWENKTMYCIVSVFGLAI 113          
The following BLAST results are available for this feature:
BLAST of EWM21844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102186|gb|EWM21844.1|7.503e-111100.00light tctex-type 1 [Nannochloropsis gaditana][more]
gi|1101655704|ref|XP_018944927.1|1.872e-2641.58PREDICTED: dynein light chain Tctex-type 1-like [C... [more]
gi|209413786|ref|NP_001129255.1|1.914e-2641.58dynein light chain Tctex-type 1 [Danio rerio][more]
gi|1126170708|ref|XP_019617363.1|3.558e-2642.57PREDICTED: dynein light chain Tctex-type 1 [Branch... [more]
gi|260835212|ref|XP_002612603.1|4.325e-2642.57hypothetical protein BRAFLDRAFT_78772 [Branchiosto... [more]
gi|1005433421|ref|XP_015754259.1|1.033e-2542.57PREDICTED: dynein light chain Tctex-type 1 [Acropo... [more]
gi|1176110619|ref|XP_020626286.1|1.216e-2542.57dynein light chain Tctex-type 1 [Orbicella faveola... [more]
gi|72009103|ref|XP_783725.1|1.578e-2541.58PREDICTED: dynein light chain Tctex-type 1 [Strong... [more]
gi|828211816|ref|XP_012558785.1|2.902e-2540.59PREDICTED: dynein light chain Tctex-type 1 [Hydra ... [more]
gi|1207911855|ref|XP_021339129.1|5.276e-2541.84dynein light chain Tctex-type 1 [Mizuhopecten yess... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8874rna8874Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications