rna8873, rna8873 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8873
Unique Name	rna8873
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1541
Alignment location	KK037250.1:360672..362423 +

Link to JBrowse

Properties


Property Name	Value
Product	superoxide dismutase
Orig transcript id	gnl\|cribi\|Naga_100051g29.8863.mrna
Orig protein id	gnl\|cribi\|Naga_100051g29.8863
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:360672..362423 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g29	gene8603	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8873	rna8873-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21824.1	cds8843	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:360672..362423+
coding sequence from alignment at KK037250.1:360672..362423+

mRNA sequence

>rna8873 ID=rna8873|Name=rna8873|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp
TCATGCCCTTGGACACCCACTCTGCCGCCGCGCCCACCTCCATTTTCCTC
TATTCTTTCCCTTGCGCCCTGCGACGAGGATTTGTCGATGTTGTGGCGCA
GGGGATGCAGACTGGTGATCCTGAAATGGTGGAGTGTTTCGTCAGGGCGC
CGTCTCTGACGCAGACGCTCCTTCTCGAGGGCGGGGGCCCTCAGGCGACA
ACGCCCGTGTCGGTTTGGTGATAGCATCTCTCGAGAAATGCTCACATGCG
CTTCAATACTTTGCATGCACAGCCTTTGGCTACTTACTTCGCGAGTGAGG
ATGTTTTCTCGAGCGGCTGCGGCCTTCAAGCGGGTGAGGTTCATCCCACC
TAGTGCCCAGGATGGCAAGGGCAAGTTGATGGGCGCGCTCGTAGCGGGCA
CGGCTGTCGCGGGCGGGGTTGCAGTTTGCAGCGCCGACCATGTCCCTTCT
ATTGATTATGGCTGGAACCACCACGGTCTTCTGGCGTCCTACGACTACCC
TGCTGTCCGCCGTGGCTTCCAAGTGTACAGGGAGGTGTGCGCCTCGTGCC
ATGCCCTTGAACACACCTATTTTCGCAACCTGGTGGGGGTGACCCACACC
GAGGAGGAGGTGAAGAAGATAGCCGAGTCCTACGACGTAGTGGACGGTCC
CAACGCGGAGGGAGAGATGTTTGAGCGGCCTGGCAAGCTCTCGGACAAAA
TTCCAGGGCCATATGCGAACAAGGAAGCGGCGCGTGCCGCCAACAATGGG
GCCTACCCCCCCGACCTCTCCCTCATCACAAAGGCGCGTCCCGGGGGGGT
GGATTACATCTTTGCCCTCCTGACTGGCTACATCGACCCACCCGAGGGGA
AAGCCATCCTTTCAGGCCTGAACTACAACCCGTACTTCCCCGGGGGCGCA
ATCGCCATGGCGAGGCAGTTGCAGGACGGACAGTTGGAGTACGAAGACGG
GACACCGGCCACCACGTCGCAGATGAGCAAGGACGTGGCCACCTTTTTGG
CCTGGGCGGCGGAGCCGGAGCACGATTATAGGAAGAAGGCGGGTGTGCAG
TGGATCGGAGCCCTGCTTGTGGCCTTGGCGCTGACGGGCTTCTACAAGCG
GTTCCGGTGGTCGCCCCTGAAGACGGCGAAATTCCACTACGTGGCGTAGG
GCGATGGGCCCATGGAAGAGGCCTTGAGCCGTGATGCCTCGAATCTAGTG
CCGGGAAGAGGGTGGAGCAGATGTCTCGGTGCGGGAGCTGTTGGGGGGTG
GGTCAGTGCCGTGGGGGGATCCTGGGAGTGGATGGGCGGTCCTGGTGAGG
TCTCAGCACGCGTATCTTACATTCATGATGAGTAGGAGGTTTAAGTGGCA
AGTGGGTATAGAATGACCATGAAAAGAAGGGAGGATGTACGGAGGAAATT
TTGGTATATACTTGAAGGACGGGGGGAGGGCTGGAGGGGAGGAGACGTCA
AGTGAGTGCTTGAAGGGACACAAAAGAAGCCTGCCTACGATAAAAAGTGG
ACAAAGTGGGGTGGAGGAAGTGCCCTCCTTGATCGAAGAGA

protein sequence of rna8873

>rna8873-protein ID=rna8873-protein|Name=rna8873|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPF
EDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAA
KGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAF
RKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDV
WEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA

mRNA from alignment at KK037250.1:360672..362423+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8873 ID=rna8873|Name=rna8873|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp|location=Sequence derived from alignment at KK037250.1:360672..362423+ (Nannochloropsis gaditana)
TCCTCGTCGCAGGGCGCAAGGGAAAGAAtagaggaaaatggaggtgGGCG
CGGCGGCAGAGTGGGTGTCCAAGGGCATGATGATCGCTTTCGCCTTGaat
cttccccttcccgccccccactGACTGGATTCTTGTCGCGCACCTGCATG
GAGCCTCAGCGGCTAATGCGGGAGCGCGTCCTCCTTGGCGCGCGTGCGCG
ACAAAAGTTTGTGAAGGCAGCATCCGTGTCTCTTTTCCACCAGACTGTGG
ATGACCGTTCTGTctcatctttttctttttccaaaCCGATTCAGGCATTT
ATCCCCTAAACTATGAAGACCTACTGCGCTGTGTTCGGAGCTGTCTCGCT
TGCGGTGGCATCTCATGCATTTATGGTGGGCAGCCCGCTGACAGGGGTTT
CCAAGGCTCCTGCTAGCTCCTCCACTGTCCGTATGGCTGTCGCCTTGCCC
CCTTTGCCGTGTAAGTGAAGAagccgggagggatgggaagacTTGGACTT
TCTGGAACACAATAagctgcttcccccccccgtcccagcTTTCGAGATCA
GAGCCGTACTTATTATCATAGGTACAAATGATGCGATCTACCTTATTGAA
TCATCTTTCcctggctccctcccgcgtGCAGTTGAGGACACGGCCCTGGA
ACCTCTCATTTCGAAGCGCACGCTAGACATTCACCACGGGAAGCACCACG
CCAAGTATGTGACGGTCACGAACGAGATGATCAAGGGCACTGATCTGGAG
AACGCGTCCCTGGAGGAGATTGTGAAAGCGGCCAAAGgtagaaaaaggga
agatgaGGTGTTGCGCAAGCAAGAAGTAGAAAGGCATGCGAGTTACAAGT
TGGCGCGTGTCTTACGCTGCCATGTAGCTTGGATTCCAAGAAATCACTTt
attccttttctttcttgaacAGGTAAGAATCAAGGATTGTTCAACAATGC
GGCGCAGGTCTGGAACCATAACTTCTACTGGAACTGCATCAAGCccaacg
ggggggggaaacccacggggaaggtggcggcCTTGATCGACCGCGACCTG
GGCGGATTCGAGGCTTTCAGGAAGCAGTTCGCTGCGGACTCGAACGGGAA
CTTTGGTAGCGGCTGGACTTGGCTGGCCATGGACGGGGACAAGCTGAAGA
TTGTGAAGACAAGCAACGCGGACTTGCCTCTCACGCAGGGGATGgtgagt
ggggagggaagcgaggcgATGAATGATAGCATTAAAGTATGAGATGAAGA
CAAGAAACTGATGATCgttggtgggagggaaactAACATGATGCCTTTCT
TTTGGGCCCCGACAGACGCCGTTGCTCGTGATCGATGTGTGGGAGCACGC
GTACTATCTCGATGTGCAGAACGTGCGTGCGCAGTACGTGGACAACTTCC
TGGACAAACTGGTCAACTGGGACTTTGTGAATGCTAATCTGGCCTGAGCC
TGTGACGGTGTTTTGTAAGTCTATCTTCCTATCGAGTCTGTCACGATTCT
GGGATCAGGCGGAGCCTCGATAAATCGGAGCAATGGCATGAGAGATGCTC
TTCTTATGAAGAGTCATTAGGCACAAACCTTTAGGAAGGGCTTAGAAGTT
TGCACGAGCAAAGAGACGCGTGGGATCGTGATGGCACGAAATCGTTAATG
AAGGCTGTGAGAAGGTGAATGATTGATTGACTTTTTGCATAGCATGCTGA
TTACATGAAGGGAATGAAACAAATTGATGACAAGAAAGAGTTTGCAAGAG
CA

Coding sequence (CDS) from alignment at KK037250.1:360672..362423+

>rna8873 ID=rna8873|Name=rna8873|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at KK037250.1:360672..362423+ (Nannochloropsis gaditana)
ATGAAGACCTACTGCGCTGTGTTCGGAGCTGTCTCGCTTGCGGTGGCATC
TCATGCATTTATGGTGGGCAGCCCGCTGACAGGGGTTTCCAAGGCTCCTG
CTAGCTCCTCCACTGTCCGTATGGCTGTCGCCTTGCCCCCTTTGCCGTTT
GAGGACACGGCCCTGGAACCTCTCATTTCGAAGCGCACGCTAGACATTCA
CCACGGGAAGCACCACGCCAAGTATGTGACGGTCACGAACGAGATGATCA
AGGGCACTGATCTGGAGAACGCGTCCCTGGAGGAGATTGTGAAAGCGGCC
AAAGGTAAGAATCAAGGATTGTTCAACAATGCGGCGCAGGTCTGGAACCA
TAACTTCTACTGGAACTGCATCAAGCccaacgggggggggaaacccacgg
ggaaggtggcggcCTTGATCGACCGCGACCTGGGCGGATTCGAGGCTTTC
AGGAAGCAGTTCGCTGCGGACTCGAACGGGAACTTTGGTAGCGGCTGGAC
TTGGCTGGCCATGGACGGGGACAAGCTGAAGATTGTGAAGACAAGCAACG
CGGACTTGCCTCTCACGCAGGGGATGACGCCGTTGCTCGTGATCGATGTG
TGGGAGCACGCGTACTATCTCGATGTGCAGAACGTGCGTGCGCAGTACGT
GGACAACTTCCTGGACAAACTGGTCAACTGGGACTTTGTGAATGCTAATC
TGGCCTGAATGAAGACCTACTGCGCTGTGTTCGGAGCTGTCTCGCTTGCG
GTGGCATCTCATGCATTTATGGTGGGCAGCCCGCTGACAGGGGTTTCCAA
GGCTCCTGCTAGCTCCTCCACTGTCCGTATGGCTGTCGCCTTGCCCCCTT
TGCCGTTTGAGGACACGGCCCTGGAACCTCTCATTTCGAAGCGCACGCTA
GACATTCACCACGGGAAGCACCACGCCAAGTATGTGACGGTCACGAACGA
GATGATCAAGGGCACTGATCTGGAGAACGCGTCCCTGGAGGAGATTGTGA
AAGCGGCCAAAGGTAAGAATCAAGGATTGTTCAACAATGCGGCGCAGGTC
TGGAACCATAACTTCTACTGGAACTGCATCAAGCccaacgggggggggaa
acccacggggaaggtggcggcCTTGATCGACCGCGACCTGGGCGGATTCG
AGGCTTTCAGGAAGCAGTTCGCTGCGGACTCGAACGGGAACTTTGGTAGC
GGCTGGACTTGGCTGGCCATGGACGGGGACAAGCTGAAGATTGTGAAGAC
AAGCAACGCGGACTTGCCTCTCACGCAGGGGATGACGCCGTTGCTCGTGA
TCGATGTGTGGGAGCACGCGTACTATCTCGATGTGCAGAACGTGCGTGCG
CAGTACGTGGACAACTTCCTGGACAAACTGGTCAACTGGGACTTTGTGAA
TGCTAATCTGGCCTGAATGAAGACCTACTGCGCTGTGTTCGGAGCTGTCT
CGCTTGCGGTGGCATCTCATGCATTTATGGTGGGCAGCCCGCTGACAGGG
GTTTCCAAGGCTCCTGCTAGCTCCTCCACTGTCCGTATGGCTGTCGCCTT
GCCCCCTTTGCCGTTTGAGGACACGGCCCTGGAACCTCTCATTTCGAAGC
GCACGCTAGACATTCACCACGGGAAGCACCACGCCAAGTATGTGACGGTC
ACGAACGAGATGATCAAGGGCACTGATCTGGAGAACGCGTCCCTGGAGGA
GATTGTGAAAGCGGCCAAAGGTAAGAATCAAGGATTGTTCAACAATGCGG
CGCAGGTCTGGAACCATAACTTCTACTGGAACTGCATCAAGCccaacggg
ggggggaaacccacggggaaggtggcggcCTTGATCGACCGCGACCTGGG
CGGATTCGAGGCTTTCAGGAAGCAGTTCGCTGCGGACTCGAACGGGAACT
TTGGTAGCGGCTGGACTTGGCTGGCCATGGACGGGGACAAGCTGAAGATT
GTGAAGACAAGCAACGCGGACTTGCCTCTCACGCAGGGGATGACGCCGTT
GCTCGTGATCGATGTGTGGGAGCACGCGTACTATCTCGATGTGCAGAACG
TGCGTGCGCAGTACGTGGACAACTTCCTGGACAAACTGGTCAACTGGGAC
TTTGTGAATGCTAATCTGGCCTGAATGAAGACCTACTGCGCTGTGTTCGG
AGCTGTCTCGCTTGCGGTGGCATCTCATGCATTTATGGTGGGCAGCCCGC
TGACAGGGGTTTCCAAGGCTCCTGCTAGCTCCTCCACTGTCCGTATGGCT
GTCGCCTTGCCCCCTTTGCCGTTTGAGGACACGGCCCTGGAACCTCTCAT
TTCGAAGCGCACGCTAGACATTCACCACGGGAAGCACCACGCCAAGTATG
TGACGGTCACGAACGAGATGATCAAGGGCACTGATCTGGAGAACGCGTCC
CTGGAGGAGATTGTGAAAGCGGCCAAAGGTAAGAATCAAGGATTGTTCAA
CAATGCGGCGCAGGTCTGGAACCATAACTTCTACTGGAACTGCATCAAGC
ccaacgggggggggaaacccacggggaaggtggcggcCTTGATCGACCGC
GACCTGGGCGGATTCGAGGCTTTCAGGAAGCAGTTCGCTGCGGACTCGAA
CGGGAACTTTGGTAGCGGCTGGACTTGGCTGGCCATGGACGGGGACAAGC
TGAAGATTGTGAAGACAAGCAACGCGGACTTGCCTCTCACGCAGGGGATG
ACGCCGTTGCTCGTGATCGATGTGTGGGAGCACGCGTACTATCTCGATGT
GCAGAACGTGCGTGCGCAGTACGTGGACAACTTCCTGGACAAACTGGTCA
ACTGGGACTTTGTGAATGCTAATCTGGCCTGA

Synonyms

Publications