EWM21824.1, cds8843 (CDS) Nannochloropsis gaditana

Overview
NameEWM21824.1
Unique Namecds8843
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:360984..361131 +
Alignment locationKK037250.1:361303..361458 +
Alignment locationKK037250.1:361594..361865 +
Alignment locationKK037250.1:361987..362118 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21824.1
Productsuperoxide dismutase
Orig transcript idgnl|cribi|Naga_100051g29.8863.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:360984..361131 +
KK037250.1supercontigKK037250.1:361303..361458 +
KK037250.1supercontigKK037250.1:361594..361865 +
KK037250.1supercontigKK037250.1:361987..362118 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004784superoxide dismutase activity
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR019833Mn/Fe_SOD_BS
IPR019832Mn/Fe_SOD_C
IPR019831Mn/Fe_SOD_N
IPR001189Mn/Fe_SOD
Homology
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|585102166|gb|EWM21824.1| (superoxide dismutase [Nannochloropsis gaditana])

HSP 1 Score: 487.649 bits (1254), Expect = 2.316e-174
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA
Sbjct:    1 MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|1101034806|gb|OIN98432.1| (superoxide dismutase [Desulfovibrionaceae bacterium CG1_02_65_16])

HSP 1 Score: 264.233 bits (674), Expect = 1.031e-86
Identity = 119/188 (63.30%), Postives = 141/188 (75.00%), Query Frame = 0
Query:   47 PLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANL 234
            PLP++  ALEP+IS RTL+ H+GKHHA YV    +++ G+ LE  SLEEIVKA+  K  GLFNNAAQ WNH FYW C+KP GGG PTGK+AA I    GGF+AFRK F   + G FGSGW WL  +G KLK++ T+NAD PL  G TPLLV+DVWEHAYYLD QN RA Y++ F+DKLVNWDFV ANL
Sbjct:   10 PLPYDKAALEPVISARTLEFHYGKHHAAYVANVKKLLPGSGLEGKSLEEIVKASAAKGGGLFNNAAQSWNHAFYWKCMKPGGGGAPTGKLAAAISASFGGFDAFRKAFVGAAAGQFGSGWGWLVEEGGKLKVMATANADTPLAHGATPLLVVDVWEHAYYLDYQNRRADYLNAFMDKLVNWDFVAANL 197          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|1189883660|ref|WP_085883764.1| (superoxide dismutase [Fe] [Oceanibacterium hippocampi] >gi|1188043345|emb|SLN55888.1| Superoxide dismutase [Fe] [Oceanibacterium hippocampi])

HSP 1 Score: 261.151 bits (666), Expect = 2.182e-85
Identity = 123/197 (62.44%), Postives = 141/197 (71.57%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGK--NQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            M + LP LP++  ALEP IS RTL+ HHGKHH  YVT  N+MI+GTDL  ASLE I+KA+ GK    G+FNNAAQVWNH FYWN + P GGGKPTG +AA ID DLGG++AF + F       FGSGW WL +DG KLK+ KT NADLPL  G T +L  DVWEHAYYLD QN R  Y+  FL  LVNWDF NANLA
Sbjct:    1 MTIELPNLPYDKAALEPHISARTLEFHHGKHHQTYVTNLNKMIEGTDLAGASLEAIIKASAGKADKAGIFNNAAQVWNHTFYWNSMAPKGGGKPTGAIAAKIDSDLGGYDAFAEAFKNAGATQFGSGWAWLVLDGGKLKVTKTPNADLPLAHGQTAILTADVWEHAYYLDYQNRRPDYLATFLSSLVNWDFANANLA 197          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|1082339933|gb|OFX05334.1| (superoxide dismutase [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12])

HSP 1 Score: 260.766 bits (665), Expect = 2.826e-85
Identity = 118/193 (61.14%), Postives = 142/193 (73.58%), Query Frame = 0
Query:   43 VALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            + LP LP++  AL P IS+ T++ H+GKHH  YV   N +I+G  L  ASLEEIV+AAKG +QGLFNNAAQVWNH FYW  ++PNGGG P G +AA+IDR  GG++AF +QFA    G FGSGW WL   GDKL+I KT NA+ PLT+G+TPLL +DVWEHAYYLD QN R  Y+  FL  LVNWDF N NLA
Sbjct:    2 IELPELPYDRKALAPHISENTINFHYGKHHKAYVDKVNSLIEGGKLATASLEEIVRAAKGTDQGLFNNAAQVWNHTFYWRSMRPNGGGAPKGDIAAMIDRSFGGYDAFSRQFADAGAGQFGSGWAWLVKAGDKLEIRKTPNAETPLTEGVTPLLTMDVWEHAYYLDYQNQRPTYIGKFLSDLVNWDFANENLA 194          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|737581723|ref|WP_035552873.1| (superoxide dismutase [Hyphomonas atlantica] >gi|630778270|gb|KCZ59723.1| superoxide dismutase [Hyphomonas atlantica])

HSP 1 Score: 258.07 bits (658), Expect = 3.967e-84
Identity = 124/198 (62.63%), Postives = 145/198 (73.23%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVK--AAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQ-GMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            MA +LP LP+E  AL P IS+ TL+ HHGKHHA YV   N +I+GTDLEN SLE I+K  AA     GLFNNAAQVWNH FYW+C+KP+GGGKP GKVA LIDRDLGG++ F K F A   G FGSGW WL     KL I KT NA+ P+T  G TP+L +DVWEHAYYLD QN R  Y+D+F++ L+NWDFVN NLA
Sbjct:    1 MAFSLPDLPYERDALAPHISEETLNFHHGKHHAAYVNNLNGLIEGTDLENESLESIIKTAAADSGKAGLFNNAAQVWNHTFYWHCMKPSGGGKPHGKVAELIDRDLGGYDQFVKDFKAAGGGQFGSGWAWLVYKDGKLHITKTPNAETPVTDMGATPVLTMDVWEHAYYLDYQNSRPNYMDSFINNLINWDFVNQNLA 198          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|749071203|ref|WP_040098145.1| (superoxide dismutase [Geoalkalibacter ferrihydriticus] >gi|748431771|gb|KIH76973.1| superoxide dismutase [Geoalkalibacter ferrihydriticus DSM 17813] >gi|1086473516|emb|SDL41562.1| superoxide dismutase, Fe-Mn family [Geoalkalibacter ferrihydriticus])

HSP 1 Score: 257.684 bits (657), Expect = 4.311e-84
Identity = 117/197 (59.39%), Postives = 143/197 (72.59%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQ--GLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            M + LP LPF   ALEP IS RT + HHGKHH  YV   N++++G+DL+  S+EEI+K   G +   G+FNN AQVWNH FYW C+KP GGG+P+GK+A  I  D GGF+ F ++F A     FGSGW WL +DG KLK+ KT+NA+ PLTQGMTPLL +DVWEHAYYLD QN R  Y+  F+DKLVNWDFVNANL 
Sbjct:    1 MTLVLPELPFAPNALEPHISARTFEFHHGKHHKAYVDNGNKLLEGSDLKGLSMEEIMKKTAGDSAKAGIFNNVAQVWNHAFYWKCMKPGGGGQPSGKIAEKIKADFGGFDKFVEEFKAAGATQFGSGWAWLVLDGGKLKVTKTANAECPLTQGMTPLLTMDVWEHAYYLDYQNRRPDYIATFIDKLVNWDFVNANLG 197          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|504964556|ref|WP_015151658.1| (superoxide dismutase [Oscillatoria acuminata] >gi|428004206|gb|AFY85049.1| superoxide dismutase [Oscillatoria acuminata PCC 6304])

HSP 1 Score: 257.684 bits (657), Expect = 5.744e-84
Identity = 113/192 (58.85%), Postives = 141/192 (73.44%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAA--KGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFV 230
            M   LPPLPF+ TALEP +SK TL+ HH KHHAKYV+  N+M+KGTD+E+ S+EE++KA        GLFNNAAQ WNH FYWNCIKP+GGGKP+G +A  I  D G F+ F+++F   ++  FGSGW WL +D   LK+ KTSNA+ P+  GMTPLL IDVWEHAYYLD QN R  Y++ F+  L+NWDFV
Sbjct:    1 MTYELPPLPFDYTALEPHVSKSTLEFHHDKHHAKYVSNYNDMVKGTDMESKSIEEVIKATYNDSSKSGLFNNAAQAWNHTFYWNCIKPSGGGKPSGALADKIAADFGSFDKFKEEFTTAASTQFGSGWAWLVLDKGTLKVTKTSNAENPIAMGMTPLLTIDVWEHAYYLDYQNKRPDYIETFISSLINWDFV 192          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|515873970|ref|WP_017304553.1| (superoxide dismutase [Spirulina subsalsa])

HSP 1 Score: 254.603 bits (649), Expect = 6.866e-83
Identity = 116/197 (58.88%), Postives = 141/197 (71.57%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGK--NQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            MA  LPPLP++ TAL+P ISK TL+ HH KHHA YV   N  ++GTD ++ S+EE++KA  G     G+FNNAAQ WNH+FYWNC+KPNGGG PTG +A  I  D G FEAF++ FA      FGSGW WL +DG  LK+ KT NA+ P+T G TPLL +DVWEHAYYLD QN R +Y++ FL  LVNWDFV  NLA
Sbjct:    1 MAYQLPPLPYDYTALDPYISKSTLEFHHDKHHAAYVNNYNAAVQGTDYDSQSIEEVIKAVAGDPDKAGIFNNAAQAWNHSFYWNCMKPNGGGTPTGALADKIAADFGSFEAFKEAFAKAGATQFGSGWAWLVLDGGTLKVTKTLNAENPMTAGQTPLLTMDVWEHAYYLDYQNARPKYIETFLSSLVNWDFVAQNLA 197          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|656720185|gb|KEF42890.1| (superoxide dismutase [Cyanobium sp. CACIAM 14])

HSP 1 Score: 254.603 bits (649), Expect = 7.095e-83
Identity = 120/197 (60.91%), Postives = 142/197 (72.08%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGK--NQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            MA  LP LP+   ALEP IS++TL+ HHGKHHA YVT  N+ I+GTDLE  SLEE++ A  G     G+FNNAAQVWNH+FYW C+KP GGG+P+G +A  I+ D G FEAF++QF       FGSGW WL +DG  LKI KT+NADLPL  G   LL +DVWEHAYYLD QN R  Y+  FLDKLVNW+FV ANLA
Sbjct:    1 MAHQLPELPYGLDALEPHISRQTLEFHHGKHHAAYVTNLNKAIEGTDLEGKSLEEVILAVAGDAGKAGVFNNAAQVWNHSFYWQCMKPGGGGEPSGALAEKINADFGSFEAFKEQFKTAGATQFGSGWAWLVLDGGTLKITKTANADLPLAHGQKALLTMDVWEHAYYLDYQNRRPDYMTTFLDKLVNWEFVAANLA 197          
BLAST of EWM21824.1 vs. NCBI_GenBank
Match: gi|1071033854|ref|WP_069791939.1| (superoxide dismutase [Cyanobacterium sp. IPPAS B-1200] >gi|1070622227|gb|OEJ77400.1| superoxide dismutase [Cyanobacterium sp. IPPAS B-1200])

HSP 1 Score: 254.603 bits (649), Expect = 7.173e-83
Identity = 117/197 (59.39%), Postives = 142/197 (72.08%), Query Frame = 0
Query:   41 MAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKG--KNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
            M   L PLP++ TALEP ISK TL+ HH KHHA YV+  N+ +KGT+LE+ S+EE++K+  G     G+FNNAAQ WNH+FYW C+KPNGGG PTG++AA ID D G F+ F + F A     FGSGW WL +D   LK+ KT NAD P+T G TPLL +DVWEHAYYLD QN R  Y+D+FL KLVNWDFV  NLA
Sbjct:    1 MTYELAPLPYDYTALEPCISKSTLEFHHDKHHAAYVSKYNDAVKGTELESKSIEEVIKSIAGDASKAGVFNNAAQAWNHSFYWQCMKPNGGGTPTGELAAKIDADFGSFDKFVEAFKAAGATQFGSGWAWLVLDNGTLKVTKTGNADNPITAGQTPLLTMDVWEHAYYLDYQNKRPAYIDDFLGKLVNWDFVAQNLA 197          
The following BLAST results are available for this feature:
BLAST of EWM21824.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102166|gb|EWM21824.1|2.316e-174100.00superoxide dismutase [Nannochloropsis gaditana][more]
gi|1101034806|gb|OIN98432.1|1.031e-8663.30superoxide dismutase [Desulfovibrionaceae bacteriu... [more]
gi|1189883660|ref|WP_085883764.1|2.182e-8562.44superoxide dismutase [Fe] [Oceanibacterium hippoca... [more]
gi|1082339933|gb|OFX05334.1|2.826e-8561.14superoxide dismutase [Alphaproteobacteria bacteriu... [more]
gi|737581723|ref|WP_035552873.1|3.967e-8462.63superoxide dismutase [Hyphomonas atlantica] >gi|63... [more]
gi|749071203|ref|WP_040098145.1|4.311e-8459.39superoxide dismutase [Geoalkalibacter ferrihydriti... [more]
gi|504964556|ref|WP_015151658.1|5.744e-8458.85superoxide dismutase [Oscillatoria acuminata] >gi|... [more]
gi|515873970|ref|WP_017304553.1|6.866e-8358.88superoxide dismutase [Spirulina subsalsa][more]
gi|656720185|gb|KEF42890.1|7.095e-8360.91superoxide dismutase [Cyanobium sp. CACIAM 14][more]
gi|1071033854|ref|WP_069791939.1|7.173e-8359.39superoxide dismutase [Cyanobacterium sp. IPPAS B-1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8873rna8873Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications