rna8851, rna8851 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8851
Unique Name	rna8851
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	642
Alignment location	KK037250.1:304413..307132 +

Link to JBrowse

Properties


Property Name	Value
Product	protein polybromo-1
Orig transcript id	gnl\|cribi\|Naga_100051g3.8878.mrna
Orig protein id	gnl\|cribi\|Naga_100051g3.8878
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:304413..307132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g3	gene8581	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8851	rna8851-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21839.1	cds8821	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:304413..307132+
coding sequence from alignment at KK037250.1:304413..307132+

mRNA sequence

>rna8851 ID=rna8851|Name=rna8851|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
ATGGACCACAGCACGTCAGAGGCCTGCCTGAAAATCCTTGGAAGGCTCAG
AAAGTCGCACCGCACTTTTGCCGCCAGCAAGGACACTTTGGTTGGTTTGA
CTGCGTATGTCGATCGAGTGGAGAACCCGTGGGACCTGGCCATGGTGGAC
AAGGCCCTGAAACACGGAGAGATCGTCTCGCCCTCCGCCTTGGTCCAGCT
CCTGCGGCGGCCCGCCAGTAATTGCCTCCGCTTTTGTATCGAGAAGGGCA
ATGCCCCGTATCGCGAAAAGGCACGGCATCTCCTCATTCAGGTGGACAGC
GAGCTGCGGGGGCATCCTTGGCTGGGGGTGGCACCGTTGCCGGCCTCGAC
CTACACGTGCCTCGACCTCTTGGAGCAGCTCGTCATCCCCCACCAGGAGC
TCCGCATGTTCTGGGCGCGCGTGGAGAACCTCGTGCATGCCTCCCTCCGT
GCGGAGTATGCGGCCAGCGTGGACCTGCCCATGGACATGGGCCGCCTGAC
CTCCGAGCTCTTGGAAGAGGGCATCTCCGCGGCCGAGTTTTTGGCCAAGG
CAGAAGTCGTCTTCAGCAACTGCATCCAGTTTTGGAGTGCTCACAACGAC
AGCGAGTCGGTGGCGCGCAGGGTCGCGTCGTTCGTTCTCTGA

protein sequence of rna8851

>rna8851-protein ID=rna8851-protein|Name=rna8851|organism=Nannochloropsis gaditana|type=polypeptide|length=880bp
MKLVQALGQLSEKAGRKATSSRYSFDKPVVVMFPQVAAAYLARIAKPMDT
STLRVQLKAHQYGSPKEFLLDMDLIFANAIAFNDGAATPYEQEVVLVSNY
LRRHLDRLALECLPLEEEYKPGERLNLSEQRRDENRQQMEEKASRQLATM
AGGDVYGRFAYQEMRELIQQLKKERRVGEFFWEEVNRNENQGYYRVIARP
ICFRDILKSMDTETGVRVGQVVADIRLIYQNALQFNSGTETLVPISRVIC
EAARLLQRRLEEKLPLVYLRIAENVERQSELREKLKVLRAEDERQRHAEL
AALTTDQNAAGLAGGEALGPKGGLAGKGAGAVSPAAAGGPSLHFPSPGVD
APSPRFRSDMEQAAGHSQSGRVGGNPAVGDLPQTGSLLANKLRKEKRREA
ELDRKHEERRRKERESKLKERITQEVWARAQKAREKMFAAKEQSSALKQK
GEEDEGGREGAMGGQQDTQNVSLGRDVSATADVRVEDNGGGAAFQPVDLS
RLGTKPGRRHSGRVERQPVRSLLAELFPTVGHDEEAKSTSLGKELDTATG
DDKQNGGGTITEDLFAQLNRVPAPEAAIRGDIDTSEKGEEEGAEDEESLS
VCSSLRDAGDDALWEDSDERARLRRLRLLLRVVRAPDILGGSEGGGHSEE
GAAGPWAPSLMHVTVIADVEDRVLGEEDRGAHGGAKRRSRRVKLQSQRPV
GLEINGGERRLILQGERQKVRAGSLEAAVALRLGGQVEVQLIVPLAPRSD
FSSTSISVPNTPALENIRYRECPVLAPLFHEAKEWCKGSQRADLDMPSAF
RWTWGRRGCQPGTAADFYHWLAGLNLAIWEEGDVAFSPSIREEERPPHCS
SPKAQSGDRCGGISTCLVLVISLEVKCDKM

mRNA from alignment at KK037250.1:304413..307132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8851 ID=rna8851|Name=rna8851|organism=Nannochloropsis gaditana|type=mRNA|length=2720bp|location=Sequence derived from alignment at KK037250.1:304413..307132+ (Nannochloropsis gaditana)
ATGAAACTCGTGCAGGCGCTCGGTCAGCTctcggagaaggcggggaggaa
ggccacgTCTTCCCGGTACAGCTTCGACAAGCCGGTGGTCGTCATGTTCC
CCCAGGTGGCAGCGGCGTACTTGGCGCGCATTGCCAAGCCCATGGATACG
TCCACGCTGCGTGTCCAGCTCAAGGCTCACCAGTACGGGTCGCCCAAAGA
ATTTCTGCTGGACATGGACCTGATTTTTGCCAACGCCATCGCCTTCAACG
ACGGAGCGGCCACGCCCTACGAGCAGGAGGTCGTCTTGGTCTCCAATTAC
CTCCGGCGGCACCTGGATAGGCTCGCGCTGGAATGCCTGccattggagga
ggaatatAAGCCCGGGGAGCGCTTGAATTTGTCGGAACAGCGCCGTGACG
AGAACAGGCagcagatggaggagaaggcgtcgCGGCAGTTGGCCACCATG
GCGGGGGGTGATGTGTACGGGCGATTTGCCTACCAAGAGATGCGGGAGCT
GATCCAGCAATTGAAGAAGGAACGACGCGTGGGGGAATTCttctgggagg
aggtgaacaGGAACGAGAACCAGGGCTACTACCGGGTCATTGCCCGGCCC
ATCTGCTTTCGCGACATTTTGAAGAGCATGGACACGGAGACGGGCGTGCG
GGTGGGGCAGGTGGTAGCAGACATCCGCTTGATTTACCAAAATGCACTCC
AATTCAACTCGGGGACGGAAACTCTCGTCCCCATATCGCGCGTTATCTGT
GAGGCCGCCCGCTTGCTCCAacggaggctggaggagaagctccCCCTCGT
CTACCTCCGAATCGCGGAGAACGTTGAGCGGCAATCAGAGCTGAGAGAGA
AGCTCAAGGTATTGCGCGCAGAAGACGAGAGACAACGCCACGCGGAGCTG
GCTGCTCTCACCACCGACCAGAACGCTGCCGGGttggcaggaggggaggc
gctggGTCCCAAAGGCGGGCTcgcggggaaaggagctgGGGCTGTCTCGC
CCGCGGCTGCCGGCGGACCAAgtcttcattttccatcTCCGGGTGTGGAT
GCGCCCTCGCCGAGGTTCAGGAGCGACATGGAACAGGCTGCGGGTCATTC
ACAAAGTGGTCGAGTGGGAGGCAACCCCGCTGTCGGCGACCTGCCACAGA
CTGGTTCCCTGCTCGCCAACAAGCTGCGCAAGgagaagcgaagggaggca
gaACTGGACAGAAAGCACGAGGaacggcgaaggaaggagcgagagagcAA
GCTGAAGGAAAGGATCACGCAGGAGGTCTGGGCTCGAGCACAAAAGGCAA
GAGAAAAAATGTTCGCAGCGAAAGAGCAGTCGTCGGCATTGAAGCagaaa
ggcgaagaggacgaggggggaagggaaggagcgatggGGGGGCAACAGGA
TACGCAGAACGTGTCGTTGGGACGGGATGTGAGTGCGACGGCGGATGTGA
GAGTGGAGGACAACGGGGGTGGGGCAGCTTTCCAGCCTGTGGACTTGTCG
CGCCTAGGGACAAAGCCAGGTCGGCGCCACTCGGGGAGAGTAGAGAGGCA
GCCGGTGCGGTCTCTGCTTGCGGAACTCTTCCCGACCGTTGGCCATGATG
AAGAGGCCAAAAGTACCTCGCTCGGGAAAGAGCTTGACACAGCCACAGGC
GATGACAAGCAGAATGGGGGGGGCACTATCACTGAGGATCTGTTCGCACA
GCTTAACAGAGTTCCAGCGCCTGAAGCAGCAATACGAGGTGACATTGATA
CGAGcgaaaagggcgaggaggaaggggcggaggatgaggagtCCCTCTCG
GTGTGTTCTTCCCTACGGGACGCGGGAGATGACGCTTTGTGGGAGGATTC
GGATGAAAGAGCACGGCTGCGGAgactgcggctgctgctgcgtgTCGTGA
GGGCCCCGGATATTCTaggggggtcggagggagggggtcacagcgaggag
ggagcagcaggcCCCTGGGCTCCGTCCTTGATGCATGTGACTGTGATagc
ggacgtggaggaccgGGTCCtgggggaagaagatcgGGGGGCGCACGGAG
GGGCGAAACGCCGGAGCCGACGTGTGAAGTTGCAGAGCCAGCGACCCGTG
GGATTGGAGATAAATGGTGGGGAGAGACGACTTATTTTGCAAGGGGAACG
GCAAAAAGTTAGAGCAGGGAGCCTCGAGGCGGCTGTGGCACTGAGACTAG
GCGGTCAGGTGGAGGTGCAGCTCATTGTGCCTTTGGCGCCCCGATCAGAC
TTTTCCAGCACTTCGATCTCGGTTCCAAATACGCCGGCGCTCGAAAATAT
CCGGTATCGTGAATGCCCCGTTTTGGCACCCCTGTTTCACGAAGCCAAGG
AGTGGTGTAAGGGGAGCCAAAGAGCCGATCTGGATATGCCTTCCGCGTTT
CGGTGGACCTGGGGCCGGCGCGGGTGCCAGCCGGGCACTGCCGCTGATTT
CTACCACTGGCTGGCTGGATTGAATTTGGCGAtatgggaggagggtgacg
tGGCTTTTTCTCCCAGTatacgggaggaggagcgtgagggaggaaatgtc
TACGTGGCTCAGCTTGTCTTTCCCGTAGGGAAGGGTGCCCTTTACGTTGG
TGGGCACCAGGTCCACCACACTGCTCTTCTCCAAAAGCACAAAGCGGAGA
TCGTTGTGGAGGAATAAGCACTTGTCTCGTGCTTGTCATTTCTCTCGAAG
TGAAATGTGATAAAATGTAG

Coding sequence (CDS) from alignment at KK037250.1:304413..307132+

>rna8851 ID=rna8851|Name=rna8851|organism=Nannochloropsis gaditana|type=CDS|length=5286bp|location=Sequence derived from alignment at KK037250.1:304413..307132+ (Nannochloropsis gaditana)
ATGAAACTCGTGCAGGCGCTCGGTCAGCTctcggagaaggcggggaggaa
ggccacgTCTTCCCGGTACAGCTTCGACAAGCCGGTGGTCGTCATGTTCC
CCCAGGTGGCAGCGGCGTACTTGGCGCGCATTGCCAAGCCCATGGATACG
TCCACGCTGCGTGTCCAGCTCAAGGCTCACCAGTACGGGTCGCCCAAAGA
ATTTCTGCTGGACATGGACCTGATTTTTGCCAACGCCATCGCCTTCAACG
ACGGAGCGGCCACGCCCTACGAGCAGGAGGTCGTCTTGGTCTCCAATTAC
CTCCGGCGGCACCTGGATAGGCTCGCGCTGGAATGCCTGccattggagga
ggaatatAAGCCCGGGGAGCGCTTGAATTTGTCGGAACAGCGCCGTGACG
AGAACAGGCagcagatggaggagaaggcgtcgCGGCAGTTGGCCACCATG
GCGGGGGGTGATGTGTACGGGCGATTTGCCTACCAAGAGATGCGGGAGCT
GATCCAGCAATTGAAGAAGGAACGACGCGTGGGGGAATTCttctgggagg
aggtgaacaGGAACGAGAACCAGGGCTACTACCGGGTCATTGCCCGGCCC
ATCTGCTTTCGCGACATTTTGAAGAGCATGGACACGGAGACGGGCGTGCG
GGTGGGGCAGGTGGTAGCAGACATCCGCTTGATTTACCAAAATGCACTCC
AATTCAACTCGGGGACGGAAACTCTCGTCCCCATATCGCGCGTTATCTGT
GAGGCCGCCCGCTTGCTCCAacggaggctggaggagaagctccCCCTCGT
CTACCTCCGAATCGCGGAGAACGTTGAGCGGCAATCAGAGCTGAGAGAGA
AGCTCAAGGTATTGCGCGCAGAAGACGAGAGACAACGCCACGCGGAGCTG
GCTGCTCTCACCACCGACCAGAACGCTGCCGGGttggcaggaggggaggc
gctggGTCCCAAAGGCGGGCTcgcggggaaaggagctgGGGCTGTCTCGC
CCGCGGCTGCCGGCGGACCAAgtcttcattttccatcTCCGGGTGTGGAT
GCGCCCTCGCCGAGGTTCAGGAGCGACATGGAACAGGCTGCGGGTCATTC
ACAAAGTGGTCGAGTGGGAGGCAACCCCGCTGTCGGCGACCTGCCACAGA
CTGGTTCCCTGCTCGCCAACAAGCTGCGCAAGgagaagcgaagggaggca
gaACTGGACAGAAAGCACGAGGaacggcgaaggaaggagcgagagagcAA
GCTGAAGGAAAGGATCACGCAGGAGGTCTGGGCTCGAGCACAAAAGGCAA
GAGAAAAAATGTTCGCAGCGAAAGAGCAGTCGTCGGCATTGAAGCagaaa
ggcgaagaggacgaggggggaagggaaggagcgatggGGGGGCAACAGGA
TACGCAGAACGTGTCGTTGGGACGGGATGTGAGTGCGACGGCGGATGTGA
GAGTGGAGGACAACGGGGGTGGGGCAGCTTTCCAGCCTGTGGACTTGTCG
CGCCTAGGGACAAAGCCAGGTCGGCGCCACTCGGGGAGAGTAGAGAGGCA
GCCGGTGCGGTCTCTGCTTGCGGAACTCTTCCCGACCGTTGGCCATGATG
AAGAGGCCAAAAGTACCTCGCTCGGGAAAGAGCTTGACACAGCCACAGGC
GATGACAAGCAGAATGGGGGGGGCACTATCACTGAGGATCTGTTCGCACA
GCTTAACAGAGTTCCAGCGCCTGAAGCAGCAATACGAGGTGACATTGATA
CGAGcgaaaagggcgaggaggaaggggcggaggatgaggagtCCCTCTCG
GTGTGTTCTTCCCTACGGGACGCGGGAGATGACGCTTTGTGGGAGGATTC
GGATGAAAGAGCACGGCTGCGGAgactgcggctgctgctgcgtgTCGTGA
GGGCCCCGGATATTCTaggggggtcggagggagggggtcacagcgaggag
ggagcagcaggcCCCTGGGCTCCGTCCTTGATGCATGTGACTGTGATagc
ggacgtggaggaccgGGTCCtgggggaagaagatcgGGGGGCGCACGGAG
GGGCGAAACGCCGGAGCCGACGTGTGAAGTTGCAGAGCCAGCGACCCGTG
GGATTGGAGATAAATGGTGGGGAGAGACGACTTATTTTGCAAGGGGAACG
GCAAAAAGTTAGAGCAGGGAGCCTCGAGGCGGCTGTGGCACTGAGACTAG
GCGGTCAGGTGGAGGTGCAGCTCATTGTGCCTTTGGCGCCCCGATCAGAC
TTTTCCAGCACTTCGATCTCGGTTCCAAATACGCCGGCGCTCGAAAATAT
CCGGTATCGTGAATGCCCCGTTTTGGCACCCCTGTTTCACGAAGCCAAGG
AGTGGTGTAAGGGGAGCCAAAGAGCCGATCTGGATATGCCTTCCGCGTTT
CGGTGGACCTGGGGCCGGCGCGGGTGCCAGCCGGGCACTGCCGCTGATTT
CTACCACTGGCTGGCTGGATTGAATTTGGCGAtatgggaggagggtgacg
tGGCTTTTTCTCCCAGTatacgggaggaggagcGTCCACCACACTGCTCT
TCTCCAAAAGCACAAAGCGGAGATCGTTGTGGAGGAATAAGCACTTGTCT
CGTGCTTGTCATTTCTCTCGAAGTGAAATGTGATAAAATGTAGATGAAAC
TCGTGCAGGCGCTCGGTCAGCTctcggagaaggcggggaggaaggccacg
TCTTCCCGGTACAGCTTCGACAAGCCGGTGGTCGTCATGTTCCCCCAGGT
GGCAGCGGCGTACTTGGCGCGCATTGCCAAGCCCATGGATACGTCCACGC
TGCGTGTCCAGCTCAAGGCTCACCAGTACGGGTCGCCCAAAGAATTTCTG
CTGGACATGGACCTGATTTTTGCCAACGCCATCGCCTTCAACGACGGAGC
GGCCACGCCCTACGAGCAGGAGGTCGTCTTGGTCTCCAATTACCTCCGGC
GGCACCTGGATAGGCTCGCGCTGGAATGCCTGccattggaggaggaatat
AAGCCCGGGGAGCGCTTGAATTTGTCGGAACAGCGCCGTGACGAGAACAG
GCagcagatggaggagaaggcgtcgCGGCAGTTGGCCACCATGGCGGGGG
GTGATGTGTACGGGCGATTTGCCTACCAAGAGATGCGGGAGCTGATCCAG
CAATTGAAGAAGGAACGACGCGTGGGGGAATTCttctgggaggaggtgaa
caGGAACGAGAACCAGGGCTACTACCGGGTCATTGCCCGGCCCATCTGCT
TTCGCGACATTTTGAAGAGCATGGACACGGAGACGGGCGTGCGGGTGGGG
CAGGTGGTAGCAGACATCCGCTTGATTTACCAAAATGCACTCCAATTCAA
CTCGGGGACGGAAACTCTCGTCCCCATATCGCGCGTTATCTGTGAGGCCG
CCCGCTTGCTCCAacggaggctggaggagaagctccCCCTCGTCTACCTC
CGAATCGCGGAGAACGTTGAGCGGCAATCAGAGCTGAGAGAGAAGCTCAA
GGTATTGCGCGCAGAAGACGAGAGACAACGCCACGCGGAGCTGGCTGCTC
TCACCACCGACCAGAACGCTGCCGGGttggcaggaggggaggcgctggGT
CCCAAAGGCGGGCTcgcggggaaaggagctgGGGCTGTCTCGCCCGCGGC
TGCCGGCGGACCAAgtcttcattttccatcTCCGGGTGTGGATGCGCCCT
CGCCGAGGTTCAGGAGCGACATGGAACAGGCTGCGGGTCATTCACAAAGT
GGTCGAGTGGGAGGCAACCCCGCTGTCGGCGACCTGCCACAGACTGGTTC
CCTGCTCGCCAACAAGCTGCGCAAGgagaagcgaagggaggcagaACTGG
ACAGAAAGCACGAGGaacggcgaaggaaggagcgagagagcAAGCTGAAG
GAAAGGATCACGCAGGAGGTCTGGGCTCGAGCACAAAAGGCAAGAGAAAA
AATGTTCGCAGCGAAAGAGCAGTCGTCGGCATTGAAGCagaaaggcgaag
aggacgaggggggaagggaaggagcgatggGGGGGCAACAGGATACGCAG
AACGTGTCGTTGGGACGGGATGTGAGTGCGACGGCGGATGTGAGAGTGGA
GGACAACGGGGGTGGGGCAGCTTTCCAGCCTGTGGACTTGTCGCGCCTAG
GGACAAAGCCAGGTCGGCGCCACTCGGGGAGAGTAGAGAGGCAGCCGGTG
CGGTCTCTGCTTGCGGAACTCTTCCCGACCGTTGGCCATGATGAAGAGGC
CAAAAGTACCTCGCTCGGGAAAGAGCTTGACACAGCCACAGGCGATGACA
AGCAGAATGGGGGGGGCACTATCACTGAGGATCTGTTCGCACAGCTTAAC
AGAGTTCCAGCGCCTGAAGCAGCAATACGAGGTGACATTGATACGAGcga
aaagggcgaggaggaaggggcggaggatgaggagtCCCTCTCGGTGTGTT
CTTCCCTACGGGACGCGGGAGATGACGCTTTGTGGGAGGATTCGGATGAA
AGAGCACGGCTGCGGAgactgcggctgctgctgcgtgTCGTGAGGGCCCC
GGATATTCTaggggggtcggagggagggggtcacagcgaggagggagcag
caggcCCCTGGGCTCCGTCCTTGATGCATGTGACTGTGATagcggacgtg
gaggaccgGGTCCtgggggaagaagatcgGGGGGCGCACGGAGGGGCGAA
ACGCCGGAGCCGACGTGTGAAGTTGCAGAGCCAGCGACCCGTGGGATTGG
AGATAAATGGTGGGGAGAGACGACTTATTTTGCAAGGGGAACGGCAAAAA
GTTAGAGCAGGGAGCCTCGAGGCGGCTGTGGCACTGAGACTAGGCGGTCA
GGTGGAGGTGCAGCTCATTGTGCCTTTGGCGCCCCGATCAGACTTTTCCA
GCACTTCGATCTCGGTTCCAAATACGCCGGCGCTCGAAAATATCCGGTAT
CGTGAATGCCCCGTTTTGGCACCCCTGTTTCACGAAGCCAAGGAGTGGTG
TAAGGGGAGCCAAAGAGCCGATCTGGATATGCCTTCCGCGTTTCGGTGGA
CCTGGGGCCGGCGCGGGTGCCAGCCGGGCACTGCCGCTGATTTCTACCAC
TGGCTGGCTGGATTGAATTTGGCGAtatgggaggagggtgacgtGGCTTT
TTCTCCCAGTatacgggaggaggagcGTCCACCACACTGCTCTTCTCCAA
AAGCACAAAGCGGAGATCGTTGTGGAGGAATAAGCACTTGTCTCGTGCTT
GTCATTTCTCTCGAAGTGAAATGTGATAAAATGTAG

Synonyms

Publications