|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100169g8.557.mrna |
| Orig protein id | gnl|cribi|Naga_100169g8.557 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:276039..278213 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8838 ID=rna8838|Name=rna8838|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp
ATTCAGGACTGCTTTGTCGGCCGCTTTTCCAAGCTTGATCGCCGCTGGCA
GCAGCCGGGACGGAGGAGGAGGATGGCAAGAAGACAGCGATACACGTTGT
CACAAAAGATGGGATGCACCCCTGCGGCCCCTCTAGAAAGAATCATGGCC
TCTCTGGTTATACTTTGTGCCTTAGTGAGCACTGGTTTTTCCTTCTCGAT
CACTCTATCTAAGCGCAGTACTCCTGCAAGGAAGCGGTATGATTCTTCAA
CTTGCTTGCCTTTGCAGCGGCCCTGCGCTGTTAAGACGATAGCCAGGCTG
AGCCCTGTCCACGAAGAACTCGGCTTGAGACCTCACAGTACGGGGGGCGT
TCGTGCCGACATCTTTTTGAGAAACACCACTGCCGTCTCCTCGTCCGTCT
CTACATTAGAGAGACCCCAGCCGGAACCTCCCCTACACGCGACCTCCACC
ATCCCGGAAAACGTTGAAGAGAAAAATATGCTAGCCCGCATGCGGCGAAT
GGAAGGAACGATGCAAAGTCTTGAGCGAGAAGTTAAGCGATTGGAAAGTG
CGATCGCAGTCAAAGGCAGAGGTAGAAGTCGCGCCAAGATGATCGTCATC
AATTATGACGTCGGCCCAGATGCCCAGATCGACTCTGTAGACATTGCGGT
CGGAGCCGCCGGAGCCTTCGGGCTACTGGGCCTGCTCATCGGCCGCTCTT
TGGCGTCCAACTTATGGTTCGTAGGGTTCTTGACCGGTGCTCTGGGCGCG
GGCTTCCTGGCCCGGGAGGAGGAGGGCGGGGCAGTGAGCGACGTGATCCG
GGCGGTGGGCTGGCAGGTGGCCGTCAAGACCCGGCAGCTCGTCTTTATGT
ACAAAACGGGCCGACTCAGCTACGTGTACGCAAAGAAGTGGGAGGCTTTC
GACCGGAAGTACGCAGTCACGAAGAAGATGGAGGCCCTGCAGACGCTCTC
CCTCAAAAAGTGGCGCGAGGCGCAGGAAGCGGAAAGGAAGTACGAGGTCC
GGTACCGGCTCACGGCCTTTCTGAAGGCGGGGTACAACGGCGTGGTGGAC
ACGACGGCCGCGCTCTTCAATGCCAAAGACAGGAAGGAGCTCGTGCGGAA
ACTCCCGAAACCCTTCAGGCTCCTCTTCATGTCCAAGGCGCAACGGCGGG
CGGAGGAGAGGCGCCGCGTCACGGTGCGGCGCTTTGTGGGGCTGCGAGAG
GGCCGGCCCATAGTAGAAGTGCAGGACGACGCGTGAGGGCTGCCGGGTCG
CAAAGGGCCACGAGCAGCTGTGTGAAAAGTACGAGAGTATCTACGAAGAA
AACAAGAGAGCCCAGCGGCAGGGTCGGTCCTCGCGCTTTTCTTTTTCAAT
CGGTCCGGCGCCCCCTTCAGGAGAATGGCCGTTCTCGCCGCTTACAACTC
TCGAGACCCCCCGTCCCACACCGCCCCGTGAACGCTAGTGGTATGGCTTT
CGGACTGCGAGTCTAGCGAAGACATTCAAGGAAGGCATACATCAGGCAGC
CGCCAGGTCTTTAAAAAAACGGTTGCGTAATTCCCCCTTTACCTGTCTCC
CGTGCTCTTCTTAAGCCTCGCAGAGCCAGAATAGCCCCAAAATCTAAACA
CGCCTATCAAAACATTGTAACGATTT back to topprotein sequence of rna8838 >rna8838-protein ID=rna8838-protein|Name=rna8838|organism=Nannochloropsis gaditana|type=polypeptide|length=617bp
MSSHQQQLEQQRAAEAYYRNMTPEQYQAYYNQYYAQQQQHQQYQQGGYGY
PQTATTSGNRKSRGGVASAAAAADAYQKYYQDYYQQYGVYPGGAYGQGQA
AVAGASGETYGASAGGYPHGASSHSGAASSSYHEGYTGGAGQASVGGLDA
EGVKKLVAKNERLMVKILECEKALEKTGPIPRQDLLDRVNKFKGRLQAHL
TKMATWMDKSKYERSRRFQPQKATYRTVVLENKILKEPRAAANSSLVAAS
APGQGAHQRQGSGGRAASASSFYQAATTAMQPSAAAATASTAAAATTRSR
YSGVYYDERGSVWSAWLTLAGGHNKCLGYFRQEMDAVEAQQQAISEYRTT
GQITGPFKGQLGALPEGVQPSSVQEQHIKSVAETAKKLKAEKARKRRKSA
AGGGEGEGEESEYEGSGGEAAGGSDSEREEGHGSGGLGMAGGASGGNKRK
SVKQGQGVAASAAAYEQYQRQVAQQQGAGATEAPGQQQWTPEAIAKYYED
MAKAYPEHAVYYQQQAAAHVLQQQQMAAAAAAAAGRDTGPGTGQPAALSS
LYTQQQQQLLRQQQQSYPGAMGGLGGAASAELKEGERIKVRVTVNGAALN
PEPHPLYIRKGVVATAM back to topmRNA from alignment at KK037250.1:276039..278213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8838 ID=rna8838|Name=rna8838|organism=Nannochloropsis gaditana|type=mRNA|length=2175bp|location=Sequence derived from alignment at KK037250.1:276039..278213+ (Nannochloropsis gaditana)
TGCCCCGTTAGGAACGGCCAAGCCCTCGTCGAAAGTGTTGTCTCGCTCGT
TTCGTCCTTCTTGTCGCTTCGCGGATCATCCTGCCTGACAATTTGATCTA
CCCGCCCAGTCGTGAAACATCTCTCTGAAAATGTCCTCTCACCAGCAGCA
GTTAGAGCAGCAGCGAGCGGCGGAGGCTTACTATAGGAACATGACTCCGG
AGCAATATCAGGCTTATTATAACCAGTATTATGctcaacagcagcaacac
caACAGTACCAGCAAGGAGGCTACGGCTATCCGCAAACGGCGACTACCAG
CGGTAATCGGAAATCCCGTGGTGGCGTTGCCTCGGCCGCGGCAGCCGCGG
ATGCGTACCAGAAGTACTACCAAGACTACTATCAGCAATACGGCGTGTAT
CCCGGCGGGGCGTACGGGCAAGGTCAGGCCGCCGTGGCTGGCGCCTCTGG
CGAGACATACGGGGCCTCTGCGGGTGGATATCCGCATGGCGCCAGCTCAC
ATTCCGGTGCAGCATCCTCTTCATACCATGAAGGATAcacgggcggggcg
gggcaggcctcGGTGGGGGGTTTGGACGCAGAAGGAGTGAAAAAACTGGT
CGCCAAAAACGAACGCCTCATGGTCAAGATACTGGAGTGCGAAAAAGCGT
TGGAAAAAACGGGTCCCATCCCTCGTCAAGACCTCTTGGATCGAGTGAAC
AAATTTAAAGGTCGACTGCAGGCGCATCTGACCAAGATGGCGACCTGGAT
GGACAAGAGCAAGTACGAACGCAGCAGACGGTTCCAGCCACAGAAAGCGA
CCTACCGCACGGTGGTGTTGGAGAACAAGATCCTTAAGGAACCGCGCGCG
GCTGCCAactcctccttggtcgccGCCTCGGCGCCTGGACAGGGGGCCCA
TCAGCGACaggggagcggggggcgggcggcctctgcctcctccttctacc
aagcggccaccaccgccatgcAGCcttcggccgccgccgcgacaGCGTCG
ACCGCAGCGGCCGCCACGACCCGCTCTCGGTATTCGGGCGTGTATTATGA
TGAGCGGGGGAGCGTCTGGAGCGCCTGGCTGACCCTGGCGGGGGGCCACA
ACAAGTGCCTTGGGTACTTTCGGCAGGAGatggacgcggtggaggcTCAG
CAGCAGGCAATCAGCGAGTATCGGACCACGGGGCAGATCACGGGGCCTTT
TAAAGGGCAGTTGGGAGCGTTGCCAGAGGGGGTGCAGCCGAGCAGCGTGC
AGGAGCAACACATCAAGTCGGTCGCGGAGACCGCCAAGAAGctcaaggcg
gagaaggcacgCAAGAGACGGAAGTCGGCtgcggggggcggagagggaga
gggagaggagagcgagTACGagggctcggggggggaggcggcaggcGGGT
CGGActcggaaagggaggaggggcatgggAGCGGGGGGTtggggatggcg
gggggTGCATCCGGCGGCAACAAAAGGAAATCGGTCAAGCAAGGCCAGGG
GGTCGCGGCCTCGGCAGCAGCGTACGAGCAGTACCAGCGACAGGTGGCGC
AGCAGCAAGGGGCGGGCGCGACGGAGGCCCCGGGCCAGCAACAGTGGACG
CCCGAGGCCATCGCCAAGTACTACGAGGACATGGCCAAGGCCTATCCGGA
GCACGCCGTCTACTACCAGCAGCAAGCCGCCGcgcacgtcctccagcagc
aacaaATGGCAgcggctgccgctgctgcggCGGGCCGGGACACGGGGCCC
GGGACGGGCCAGCCggcggccctctcctcgctctacacgcagcaacaaca
gcagctcCTTCGTCAGCAGCAACAGTCATATCCAGGCGCGATGGGGGGAC
TCGGGGGCGCAGCCTCGGCggagttgaaggagggagagcggatCAAGGTG
CGGGTGACGGTGAACGGGGCGGCGCTGAACCCGGAGCCCCATCCGCTCTA
TATCCGGAAGGGCGTAGTGGCCACGGCCATGTAAGCAGAAGCGAAGGGGG
CGTTGGGGCAaggatcaaggagggaggtggcgggagagTTGGCGGGTTGC
CTCGCaccgggcgagggaggacggtctGTGGGCGTGAAAGACGAACGAGG
CGGCACCAGATGAGCGTGCCAGCTCAATCGACATGACAAGCTATAAACGA
AAGAAAAGAGTTTTGCCTCGATCGA back to topCoding sequence (CDS) from alignment at KK037250.1:276039..278213+ >rna8838 ID=rna8838|Name=rna8838|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at KK037250.1:276039..278213+ (Nannochloropsis gaditana)
ATGTCCTCTCACCAGCAGCAGTTAGAGCAGCAGCGAGCGGCGGAGGCTTA
CTATAGGAACATGACTCCGGAGCAATATCAGGCTTATTATAACCAGTATT
ATGctcaacagcagcaacaccaACAGTACCAGCAAGGAGGCTACGGCTAT
CCGCAAACGGCGACTACCAGCGGTAATCGGAAATCCCGTGGTGGCGTTGC
CTCGGCCGCGGCAGCCGCGGATGCGTACCAGAAGTACTACCAAGACTACT
ATCAGCAATACGGCGTGTATCCCGGCGGGGCGTACGGGCAAGGTCAGGCC
GCCGTGGCTGGCGCCTCTGGCGAGACATACGGGGCCTCTGCGGGTGGATA
TCCGCATGGCGCCAGCTCACATTCCGGTGCAGCATCCTCTTCATACCATG
AAGGATAcacgggcggggcggggcaggcctcGGTGGGGGGTTTGGACGCA
GAAGGAGTGAAAAAACTGGTCGCCAAAAACGAACGCCTCATGGTCAAGAT
ACTGGAGTGCGAAAAAGCGTTGGAAAAAACGGGTCCCATCCCTCGTCAAG
ACCTCTTGGATCGAGTGAACAAATTTAAAGGTCGACTGCAGGCGCATCTG
ACCAAGATGGCGACCTGGATGGACAAGAGCAAGTACGAACGCAGCAGACG
GTTCCAGCCACAGAAAGCGACCTACCGCACGGTGGTGTTGGAGAACAAGA
TCCTTAAGGAACCGCGCGCGGCTGCCAactcctccttggtcgccGCCTCG
GCGCCTGGACAGGGGGCCCATCAGCGACaggggagcggggggcgggcggc
ctctgcctcctccttctaccaagcggccaccaccgccatgcAGCcttcgg
ccgccgccgcgacaGCGTCGACCGCAGCGGCCGCCACGACCCGCTCTCGG
TATTCGGGCGTGTATTATGATGAGCGGGGGAGCGTCTGGAGCGCCTGGCT
GACCCTGGCGGGGGGCCACAACAAGTGCCTTGGGTACTTTCGGCAGGAGa
tggacgcggtggaggcTCAGCAGCAGGCAATCAGCGAGTATCGGACCACG
GGGCAGATCACGGGGCCTTTTAAAGGGCAGTTGGGAGCGTTGCCAGAGGG
GGTGCAGCCGAGCAGCGTGCAGGAGCAACACATCAAGTCGGTCGCGGAGA
CCGCCAAGAAGctcaaggcggagaaggcacgCAAGAGACGGAAGTCGGCt
gcggggggcggagagggagagggagaggagagcgagTACGagggctcggg
gggggaggcggcaggcGGGTCGGActcggaaagggaggaggggcatgggA
GCGGGGGGTtggggatggcggggggTGCATCCGGCGGCAACAAAAGGAAA
TCGGTCAAGCAAGGCCAGGGGGTCGCGGCCTCGGCAGCAGCGTACGAGCA
GTACCAGCGACAGGTGGCGCAGCAGCAAGGGGCGGGCGCGACGGAGGCCC
CGGGCCAGCAACAGTGGACGCCCGAGGCCATCGCCAAGTACTACGAGGAC
ATGGCCAAGGCCTATCCGGAGCACGCCGTCTACTACCAGCAGCAAGCCGC
CGcgcacgtcctccagcagcaacaaATGGCAgcggctgccgctgctgcgg
CGGGCCGGGACACGGGGCCCGGGACGGGCCAGCCggcggccctctcctcg
ctctacacgcagcaacaacagcagctcCTTCGTCAGCAGCAACAGTCATA
TCCAGGCGCGATGGGGGGACTCGGGGGCGCAGCCTCGGCggagttgaagg
agggagagcggatCAAGGTGCGGGTGACGGTGAACGGGGCGGCGCTGAAC
CCGGAGCCCCATCCGCTCTATATCCGGAAGGGCGTAGTGGCCACGGCCAT
GTAA back to top
|