rna8837, rna8837 (mRNA) Nannochloropsis gaditana

Overview
Namerna8837
Unique Namerna8837
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1084
Alignment locationKK037250.1:273965..275725 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g7.558.mrna
Orig protein idgnl|cribi|Naga_100169g7.558
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:273965..275725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g7gene8567Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8837rna8837-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21867.1cds8807Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8837 ID=rna8837|Name=rna8837|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp
TCCTACGGACGTTCTGACCATTCCATCCCCACGCTACTTGTACCCACATA
ATTGAAATTAGAATTCAGACGCCGCGTCACAAAGATGCCTTTGTACGACC
ATGCTTCATTGATCGGAGAGGAAGATAAGGCATGGGGGGAGACCCCAGGA
GGAGGCTCACCCTTAACGAACAACTTGATAGTGCGTGGGCCTGGGGGACA
GTGCTACCCTCTCAACGTGCAGGGCGACATGCGCGTCCAGGATCTCAAAG
CCCAGGTTGCGACCGCGATAGGCGTGGCAGTTGAGGAGCAGTACCTTCTG
CATCGGTGCAAGATTTTGCAAGACCATGAGGCATTGGCCTCGTATGACCT
TGGCACACAGCACCACCTTTCCAAGAAGGCGATGGCGACGTACCAAATGC
CCACAGTAGAAGTGGGAATTCGTCAGCGCGGTGGCTGTTTTATTGTCACC
TTCACCCTCCTTACCATTCTCTTTTTTGCGACACTCTGTGCGCCTTTGAC
GTGTGGGACTTCCCTGTGCCTATACCTGTTCCTGCTCCCGCCGGTCTTTA
TCCTGCCCTTCTTTTGCCTGTGAGGGGGAGTCCAGGTTGAAGTAGGGAAG
CGACGGTATTTTTTTTCCTATCCTAGAATTAGTCATCGAATCCGAGCGCA
GTGTTGAAGCGCCAGGACGGGTATAGGGAGGTTTCGGGTTCGGGCAGCGT
GGCAGAATGCGATGGACATTTTGGGGGGTAGCCAATTTTGAGGGGACGGA
AAGATCGTTTCAATGTTTTGATAGGCGTGTTAAAATCGTTACAATGTTTT
GATAGGCGTGTTTAGATTTTGGGGCTATTCTGGCTCTGCGAGGCTTAAGA
AGAGCACGGGAGACAGGTAAAGGGGGAATTACGCAACCGTTTTTTTAAAG
ACCTGGCGGCTGCCTGATGTATGCCTTCCTTGAATGTCTTCGCTAGACTC
GCAGTCCGAAAGCCATACCACTAGCGTTCACGGGGCGGTGTGGGACGGGG
GGTCTCGAGAGTTGTAAGCGGCGAGAACGGCCATTCTCCTGAAGGGGGCG
CCGGACCGATTGAAAAAGAAAAGCGCGAGGACCG
back to top

protein sequence of rna8837

>rna8837-protein ID=rna8837-protein|Name=rna8837|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MARRQRYTLSQKMGCTPAAPLERIMASLVILCALVSTGFSFSITLSKRST
PARKRYDSSTCLPLQRPCAVKTIARLSPVHEELGLRPHSTGGVRADIFLR
NTTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSL
EREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFG
LLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVA
VKTRQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREA
QEAERKYEVRYRLTAFLKAGYNGVVDTTAALFNAKDRKELVRKLPKPFRL
LFMSKAQRRAEERRRVTVRRFVGLREGRPIVEVQDDA
back to top

mRNA from alignment at KK037250.1:273965..275725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8837 ID=rna8837|Name=rna8837|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp|location=Sequence derived from alignment at KK037250.1:273965..275725- (Nannochloropsis gaditana)
ATTCAGGACTGCTTTGTCGGCCGCTTTTCCAAGCTTGATCGCCGCTGGCA
GCAGCCGGGACGGAGGAGGAGGATGGCAAGAAGACAGCGATACACGTTGT
CACAAAAGATGGGATGCACCCCTGCGGCCCCTCTAGAAAGAATCATGGCC
TCTCTGGTTATACTTTGTGCCTTAGTGAGCACTGGTTTTTCCTTCTCGAT
CACTCTATCTAAGCGCAGTACTCCTGCAAGGAAGCGGTATGATTCTTCAA
CTTGCTTGCCTTTGCAGCGGCCCTGCGCTGTTAAGACGATAGCCAGGCTG
AGCCCTGTCCACGAAGAACTCGGCTTGAGACCTCACAGTACGGGGGGCGT
TCGTGCCGACATCTTTTTGAGAAACACCACTGCCGTCTCCTCGTCCGTCT
CTACATTAGAGAGACCCCAGCCGGAACCTCCCCTACACGCGACCTCCACC
ATCCCGGAAAACGTTGAAGAGAAAAATATGCTAGCCCGCATGCGGCGAAT
GGAAGGAACGATGCAAAGTCTTGAGCGAGAAGTTAAGCGATTGGAAAGTG
CGATCGCAGTCAAAGGCAGAGGTAGAAGTCGCGCCAAGATGATCGTCATC
AATTATGACGTCGGCCCAGATGCCCAGATCGACTCTGTAGACATTGCGGT
CGGAGCCGCCGGAGCCTTCGGGCTACTGGGCCTGCTCATCGGCCGCTCTT
TGGCGTCCAACTTATGGTTCGTAGGGTTCTTGACCGGTGCTCTGGGCGCG
GGCTTCCTGGCCCGGGAGGAGGAGGGCGGGGCAGTGAGCGACGTGATCCG
GGCGGTGGGCTGGCAGGTGGCCGTCAAGACCCGGCAGCTCGTCTTTATGT
ACAAAACGGGCCGACTCAGCTACGTGTACGCAAAGAAGTGGGAGGCTTTC
GACCGGAAGTACGCAGTCACGAAGAAGATGGAGGCCCTGCAGACGCTCTC
CCTCAAAAAGTGGCGCGAGGCGCAGGAAGCGGAAAGGAAGTACGAGGTCC
GGTACCGGCTCACGGCCTTTCTGAAGGCGGGGTACAACGGCGTGGTGGAC
ACGACGGCCGCGCTCTTCAATGCCAAAGACAGGAAGGAGCTCGTGCGGAA
ACTCCCGGTGAGGGATAAAGGGAGGAGACGGCTCGACGTCATGCCCGGAG
CTCCGGGCACTTACTCTCTTTCGCGCCCCACTGCCCGGCCTACCTTTCCT
CCTGCTCATCCTCGATCTTTCCATTTCCTCCCACCGAGGCAGAAACCCTT
CAGGCTCCTCTTCATGTCCAAGGCGCAACGGCGGGCGGAGGAGAGGCGCC
GCGTCACGGTGCGGCGCTTTGTGGGGCTGCGAGAGGGCCGGCCCATAGTA
GAAGTGCAGGACGACGCGTGAGGGCTGCCGGGTCGCAAAGGGCCACGAGC
AGCTGTGTGAAAAGTACGAGAGTATCTACGAAGAAAACAAGAGAGCCCAG
CGGCAGGGTCGGTCCTCGCGCTTTTCTTTTTCAATCGGTCCGGCGCCCCC
TTCAGGAGAATGGCCGTTCTCGCCGCTTACAACTCTCGAGACCCCCCGTC
CCACACCGCCCCGTGAACGCTAGTGGTATGGCTTTCGGACTGCGAGTCTA
GCGAAGACATTCAAGGAAGGCATACATCAGGCAGCCGCCAGGTCTTTAAA
AAAACGGTTGCGTAATTCCCCCTTTACCTGTCTCCCGTGCTCTTCTTAAG
CCTCGCAGAGCCAGAATAGCCCCAAAATCTAAACACGCCTATCAAAACAT
TGTAACGATTT
back to top

Coding sequence (CDS) from alignment at KK037250.1:273965..275725-

>rna8837 ID=rna8837|Name=rna8837|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at KK037250.1:273965..275725- (Nannochloropsis gaditana)
AAACCCTTCAGGCTCCTCTTCATGTCCAAGGCGCAACGGCGGGCGGAGGA
GAGGCGCCGCGTCACGGTGCGGCGCTTTGTGGGGCTGCGAGAGGGCCGGC
CCATAGTAGAAGTGCAGGACGACGCGTGAATGGCAAGAAGACAGCGATAC
ACGTTGTCACAAAAGATGGGATGCACCCCTGCGGCCCCTCTAGAAAGAAT
CATGGCCTCTCTGGTTATACTTTGTGCCTTAGTGAGCACTGGTTTTTCCT
TCTCGATCACTCTATCTAAGCGCAGTACTCCTGCAAGGAAGCGGTATGAT
TCTTCAACTTGCTTGCCTTTGCAGCGGCCCTGCGCTGTTAAGACGATAGC
CAGGCTGAGCCCTGTCCACGAAGAACTCGGCTTGAGACCTCACAGTACGG
GGGGCGTTCGTGCCGACATCTTTTTGAGAAACACCACTGCCGTCTCCTCG
TCCGTCTCTACATTAGAGAGACCCCAGCCGGAACCTCCCCTACACGCGAC
CTCCACCATCCCGGAAAACGTTGAAGAGAAAAATATGCTAGCCCGCATGC
GGCGAATGGAAGGAACGATGCAAAGTCTTGAGCGAGAAGTTAAGCGATTG
GAAAGTGCGATCGCAGTCAAAGGCAGAGGTAGAAGTCGCGCCAAGATGAT
CGTCATCAATTATGACGTCGGCCCAGATGCCCAGATCGACTCTGTAGACA
TTGCGGTCGGAGCCGCCGGAGCCTTCGGGCTACTGGGCCTGCTCATCGGC
CGCTCTTTGGCGTCCAACTTATGGTTCGTAGGGTTCTTGACCGGTGCTCT
GGGCGCGGGCTTCCTGGCCCGGGAGGAGGAGGGCGGGGCAGTGAGCGACG
TGATCCGGGCGGTGGGCTGGCAGGTGGCCGTCAAGACCCGGCAGCTCGTC
TTTATGTACAAAACGGGCCGACTCAGCTACGTGTACGCAAAGAAGTGGGA
GGCTTTCGACCGGAAGTACGCAGTCACGAAGAAGATGGAGGCCCTGCAGA
CGCTCTCCCTCAAAAAGTGGCGCGAGGCGCAGGAAGCGGAAAGGAAGTAC
GAGGTCCGGTACCGGCTCACGGCCTTTCTGAAGGCGGGGTACAACGGCGT
GGTGGACACGACGGCCGCGCTCTTCAATGCCAAAGACAGGAAGGAGCTCG
TGCGGAAACTCCCGAAACCCTTCAGGCTCCTCTTCATGTCCAAGGCGCAA
CGGCGGGCGGAGGAGAGGCGCCGCGTCACGGTGCGGCGCTTTGTGGGGCT
GCGAGAGGGCCGGCCCATAGTAGAAGTGCAGGACGACGCGTGAATGGCAA
GAAGACAGCGATACACGTTGTCACAAAAGATGGGATGCACCCCTGCGGCC
CCTCTAGAAAGAATCATGGCCTCTCTGGTTATACTTTGTGCCTTAGTGAG
CACTGGTTTTTCCTTCTCGATCACTCTATCTAAGCGCAGTACTCCTGCAA
GGAAGCGGTATGATTCTTCAACTTGCTTGCCTTTGCAGCGGCCCTGCGCT
GTTAAGACGATAGCCAGGCTGAGCCCTGTCCACGAAGAACTCGGCTTGAG
ACCTCACAGTACGGGGGGCGTTCGTGCCGACATCTTTTTGAGAAACACCA
CTGCCGTCTCCTCGTCCGTCTCTACATTAGAGAGACCCCAGCCGGAACCT
CCCCTACACGCGACCTCCACCATCCCGGAAAACGTTGAAGAGAAAAATAT
GCTAGCCCGCATGCGGCGAATGGAAGGAACGATGCAAAGTCTTGAGCGAG
AAGTTAAGCGATTGGAAAGTGCGATCGCAGTCAAAGGCAGAGGTAGAAGT
CGCGCCAAGATGATCGTCATCAATTATGACGTCGGCCCAGATGCCCAGAT
CGACTCTGTAGACATTGCGGTCGGAGCCGCCGGAGCCTTCGGGCTACTGG
GCCTGCTCATCGGCCGCTCTTTGGCGTCCAACTTATGGTTCGTAGGGTTC
TTGACCGGTGCTCTGGGCGCGGGCTTCCTGGCCCGGGAGGAGGAGGGCGG
GGCAGTGAGCGACGTGATCCGGGCGGTGGGCTGGCAGGTGGCCGTCAAGA
CCCGGCAGCTCGTCTTTATGTACAAAACGGGCCGACTCAGCTACGTGTAC
GCAAAGAAGTGGGAGGCTTTCGACCGGAAGTACGCAGTCACGAAGAAGAT
GGAGGCCCTGCAGACGCTCTCCCTCAAAAAGTGGCGCGAGGCGCAGGAAG
CGGAAAGGAAGTACGAGGTCCGGTACCGGCTCACGGCCTTTCTGAAGGCG
GGGTACAACGGCGTGGTGGACACGACGGCCGCGCTCTTCAATGCCAAAGA
CAGGAAGGAGCTCGTGCGGAAACTCCCG
back to top
Synonyms
Publications