EWM21867.1, cds8807 (CDS) Nannochloropsis gaditana

Overview
NameEWM21867.1
Unique Namecds8807
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:274619..275653 -
Alignment locationKK037250.1:274355..274483 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21867.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g7.558.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:274619..275653 -
KK037250.1supercontigKK037250.1:274355..274483 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21867.1 vs. NCBI_GenBank
Match: gi|585102210|gb|EWM21867.1| (hypothetical protein Naga_100169g7 [Nannochloropsis gaditana])

HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query:    1 MARRQRYTLSQKMGCTPAAPLERIMASLVILCALVSTGFSFSITLSKRSTPARKRYDSSTCLPLQRPCAVKTIARLSPVHEELGLRPHSTGGVRADIFLRNTTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSLEREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKTRQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAGYNGVVDTTAALFNAKDRKELVRKLPKPFRLLFMSKAQRRAEERRRVTVRRFVGLREGRPIVEVQDDA 387
            MARRQRYTLSQKMGCTPAAPLERIMASLVILCALVSTGFSFSITLSKRSTPARKRYDSSTCLPLQRPCAVKTIARLSPVHEELGLRPHSTGGVRADIFLRNTTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSLEREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKTRQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAGYNGVVDTTAALFNAKDRKELVRKLPKPFRLLFMSKAQRRAEERRRVTVRRFVGLREGRPIVEVQDDA
Sbjct:    1 MARRQRYTLSQKMGCTPAAPLERIMASLVILCALVSTGFSFSITLSKRSTPARKRYDSSTCLPLQRPCAVKTIARLSPVHEELGLRPHSTGGVRADIFLRNTTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSLEREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKTRQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAGYNGVVDTTAALFNAKDRKELVRKLPKPFRLLFMSKAQRRAEERRRVTVRRFVGLREGRPIVEVQDDA 387          
BLAST of EWM21867.1 vs. NCBI_GenBank
Match: gi|298706958|emb|CBJ29777.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.5666 bits (192), Expect = 2.511e-12
Identity = 60/184 (32.61%), Postives = 97/184 (52.72%), Query Frame = 0
Query:  147 MQSLEREVKRL--ESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKTR-------QLVFMYKTGRLSYVYAKKWEAFDRKYAVTKK-MEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAG 320
            +   ERE+KR+  E ++A   R   R +  +I          D+    +GAA A  + G+++G S+  NLW VG +TGAL    L+R    G V  +    G QVA+  +       Q VF+YKTG+LSY Y + +E +D+ + ++ K  E +  +S    +EA E +R+Y++R +    L+AG
Sbjct:  128 LSETERELKRIQKEGSLAKTNRSEVRDRKFII----------DTRAKMLGAAFAGSVAGMIVGWSVLPNLWLVGGVTGALAFAALSRSST-GTVGTICSTCGIQVALMYKDVRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSAKYTETVAKVS----KEALELDRQYKIRQKT---LRAG 293          
BLAST of EWM21867.1 vs. NCBI_GenBank
Match: gi|1210521474|dbj|GAX19464.1| (hypothetical protein FisN_19Hh038 [Fistulifera solaris])

HSP 1 Score: 65.0846 bits (157), Expect = 8.383e-8
Identity = 39/136 (28.68%), Postives = 70/136 (51.47%), Query Frame = 0
Query:  184 AQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKT-------RQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQT------LSLKKWREAQEAERK 306
            +++D   +  G + A  LLG+++G S+  NLW  G + GA+    +   +E    S ++  +G ++A  +         L FMYKTG+LSY Y +++ A D+K+A+  K++A         +   KW +  E  R+
Sbjct:  301 SKLDLNALKKGNSVAGLLLGMILGISILPNLWLFGSIVGAVYGYNITPLDELNVASRIVTQLGRKIARASLSVYDSANTLFFMYKTGQLSYEYYQRYAALDQKFAIQDKIDAFNARFAEGKVKFDKWEKENEVGRR 436          
BLAST of EWM21867.1 vs. NCBI_GenBank
Match: gi|1072237580|gb|OEU22307.1| (hypothetical protein FRACYDRAFT_259021 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.929 bits (154), Expect = 2.258e-7
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 0
Query:  190 DIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREE-------------EGGAVSDVIRAVGWQVAVKTRQLV-------FMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAGY 321
            DI  G   A    G ++G ++  NLW VGF +GA+    + +E              E   ++  + A G Q+A    Q         F+YKTG+LSY Y K +E  D K+A+  K++A   +  +  ++  + E+  EV  ++ A L+  +
Sbjct:  231 DIQRGTTIAGSFSGFILGATILPNLWLVGFFSGAIYGYEITKENPLSITQQGQIHTIEPNIIARFLIAFGKQLAKIYLQFADYGKAMWFLYKTGQLSYEYYKTYETLDNKFAIQNKVDAWNRVFGEGKQKFDDWEKNNEVGRKMLAGLRTAW 382          
BLAST of EWM21867.1 vs. NCBI_GenBank
Match: gi|1210524752|dbj|GAX16460.1| (hypothetical protein FisN_19Lh038 [Fistulifera solaris])

HSP 1 Score: 62.003 bits (149), Expect = 7.973e-7
Identity = 37/136 (27.21%), Postives = 68/136 (50.00%), Query Frame = 0
Query:  184 AQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGGAVSDVIRAVGWQVAVKT-------RQLVFMYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQT------LSLKKWREAQEAERK 306
            +++D   +  G   A  LLG+++  S+  NLW  G + GA+    +   ++    S V+  +G ++A  +         L FMYKTG+LSY Y +++ A D+++A+  K++A         +   KW +  E  R+
Sbjct:  221 SKLDFSSLKKGNLVAGLLLGMILAMSILPNLWLFGSIVGAIYGYNITPLDQDNIASRVVSHLGRRIARASLSVYDSANTLFFMYKTGQLSYKYYQRYAALDQRFAIQDKIDAFNARFAEGKVKFDKWEKENEVGRR 356          
The following BLAST results are available for this feature:
BLAST of EWM21867.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102210|gb|EWM21867.1|0.000e+0100.00hypothetical protein Naga_100169g7 [Nannochloropsi... [more]
gi|298706958|emb|CBJ29777.1|2.511e-1232.61expressed unknown protein [Ectocarpus siliculosus][more]
gi|1210521474|dbj|GAX19464.1|8.383e-828.68hypothetical protein FisN_19Hh038 [Fistulifera sol... [more]
gi|1072237580|gb|OEU22307.1|2.258e-727.63hypothetical protein FRACYDRAFT_259021 [Fragilario... [more]
gi|1210524752|dbj|GAX16460.1|7.973e-727.21hypothetical protein FisN_19Lh038 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8837rna8837Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications