rna8836, rna8836 (mRNA) Nannochloropsis gaditana

Overview
Namerna8836
Unique Namerna8836
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2035
Alignment locationKK037250.1:273183..274266 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g6.562.mrna
Orig protein idgnl|cribi|Naga_100169g6.562
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:273183..274266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g6gene8566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8836rna8836-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21871.1cds8806Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8836 ID=rna8836|Name=rna8836|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp
CCTCACTTGCGATTCCTCCACTCTCTCGATCTGCCCGACAGGCCTCAAAG
GGTAATGAGCCGGAAAGGTATGGCTCTCTTCCCCGCAAAAGCGTCATGGC
AGTTCACTCTGGTGATGGTGTTGTCCAGCATTGCATCACTGACCGTACAA
GCCTTCACGGCTCCATGCCGCGCCTCACAGTTGCTGGGGAGGAGGTCGGT
GCAGCTACCGTCTCCTCCTACTTTCTCAGTAGGTTCAATACGAATGTCAG
CTGGCAGTCCGCCCAGGGATGACAAGTACTTGCTTGACGGTGAGACAGAA
GTTTTTTGTAACCGGGAAATCAATATGCAGCAGATCCGGGCCATTGGGTT
CGACATGGACTATACTCTCGCTCAGTACAACCTGGCCTTCGAGCTGCTCG
CCTACGACGGGGCCAAGCAGAAGCTTGTCGACACCTTTCGATACCCTGAA
GCTGTGGCTAGTTTCGAGTATGATTCTACGTACTTTCGGCGGGGACTCGT
GATCGACAAAGAGAGAGGGAACGTGATCAAGATGGACAGGCATAAGTACG
TCCGACAAGCCTACCACGGCTTCTCCCCCCTCCCGTCCGCCGTCCGAAAA
AGCCTGTACATGGCCAGCTCTGAGAATATTCCGCTATATACCGAGAGCAC
GTTTGTGAACATCGACACTCTCTTCCTCCTCGTGGACGCCTACCTCTTCG
CCCAGCTGGTCGAGTACAAGGACCGGCACCCGAGCGAGATCAAGCACTCC
TACGCCGCCATCTACTCGCACATCCGCCAATGCGTGGACCTGTGCCACCG
CGACGGGGTCATCAAGGACCGAGTGGCGGAGGACCCGGGGGCCTACATCG
TCCCTGATCCGGGCATGGTGACCATGCTCGAGCAATACAAGGAGAGCGGG
CGGAAGACCTTCCTGGTCACCAACAGCCTGTGGGAATACACGGATGTGGT
GATGAATTTCTTGGTCGGGAACAAGGGCCCGCGCAACCAAGACTGGCTGG
ACCTGTTCGAGGTCGTGATCGTGGGAAGCCGGAAGCCGGCCTTTCTGGAG
GATCGGTCCGCCTACATGATGCGGGTCGCCCCCGCGGACGGTTCCTTGCG
CAATGTGGACGGCGTGGAGGGGCCCGTGGACGCCTTCTTGGCGCAGGGCA
AGGTCTTCCAGGGCGGGAACTGGAAGCATTTGCTGGAGATGCTCAAGCTC
ACCTCGGGGGACAACGTCCTCTACGTGGGCGACCACATGTACAGCGACAT
CCTCAGAAGCAAGAGAAGTCTGGGCTGGCGGACCTGTCTGGTGATCCCGG
AGCTGGCGGGGGAGGTGGCGGCCTTGCAGCAGTACGCGGGCCTGGACGCA
GGCTTGCAAGAACTGAGAAGACGACGGCTGGTCATGGACGAGGAGATGGA
CTCTCTGTACAAGTCAATTCAGGTGTTGCGCCGGGAGGAAAAGCAGGGCG
CTCAGGGCGGGGCGAGCACAGAGCCTTCTCCCGAGCTAAAGAAACTGACG
CGGCAACTGCAAGAGCTGGAGGAGGCGGGCGAGCGACTGGACGACACTAT
CAAGGCGGGCTGCTCCGACTACCACCACAAGTTCCACCGGGTGTGGGGCA
AGCTTTTTGAGTCCGGATTCCAGGAAAGTCGCTTTGCGAAGCAAGTTTCC
ACCTACGCCTGCGTGTACACAAAGAAAGCCTCGAACCTGGGCATGGTCTC
GCCGGAGCGCTGGTTCCGGACGGTTCGAGATAGCATGCCTCACGACGTTT
ACTTGGCCCTAGGCTTGGGGGGGGCAAGTCAAACCGAGATGGTGGGTGCG
GACGCGGGGGATCCTCGTTGAGGGGGAGACGAGGGGGGGCAAAGGTACGG
AGGGAAAACAGAAAGCATGAAGGCGAAGGCCAGGTGCCGGGTTGCTCCAA
GGTCTGTCGCGGGGACAGGAGACTACTGGAAGATGACGGGCCCGTCTTTC
GCGGCTCGAAGAATTGTATACATGGTCTAGAAACTGTAGCGTACTCTGCA
AAGCAAAAATATACCAGGCTAAAGTCAGATTTTTC
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protein sequence of rna8836

>rna8836-protein ID=rna8836-protein|Name=rna8836|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MPLYDHASLIGEEDKAWGETPGGGSPLTNNLIVRGPGGQCYPLNVQGDMR
VQDLKAQVATAIGVAVEEQYLLHRCKILQDHEALASYDLGTQHHLSKKAM
ATYQMPTVEVGIRQRGGCFIVTFTLLTILFFATLCAPLTCGTSLCLYLFL
LPPVFILPFFCL
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mRNA from alignment at KK037250.1:273183..274266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8836 ID=rna8836|Name=rna8836|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp|location=Sequence derived from alignment at KK037250.1:273183..274266+ (Nannochloropsis gaditana)
TCCTACGGACGTTCTGACCATTCCATCCCCACGCTACTTGTACCCACATA
ATTGAAATTAGAATTCAGACGCCGCGTCACAAAGATGCCTTTGTACGACC
ATGCTTCATTGATCGGAGAGGAAGATAAGGCATGGGGGGAGAccccagga
ggaggctcaCCCTTAACGAACAACTTGATAGTGCGTGGGCCTGGGGGACA
GTGCTACCCTCTCAACGTGCAGGGCGACATGCGCGTCCAGGATCTCAAAG
CCCAGGTTGCGACCGCGATAGGCGTGGCAGTTGAGGAGCAGTACCTTCTG
CATCGGTGCAAGATTTTGCAAGACCATGAGGCATTGGCCTCGTATGACCT
TGGCACACAGCACCACCTTTccaagaaggcgatggcgacGTACCAAATGC
CCACAGTAGAAGTGGGAATTCGTCAGCGCGGTGGCTGTTTTATTGTCACC
TTCACCCTCCTTACCATTCTCTTTTTTGCGACACTCTGTGCGCCTTTGAC
GTGTGGGACTTCCCTGTGCCTATACCtgttcctgctcccgccGGTCTTTA
TCCTGCCCTTCTTTTGCCTGTGAGGGGGAGTCCAGGTTGAAGTAGGGAAG
CGACggtattttttttcctatcCTAGAATTAGTCATCGAATCCGAGCGCA
GTGTTGAAGCGCCAGGACGGGTATAGGGAGGTTTCGGGTTCGGGCAGCGT
GGCAGAATGCGATGGACATTTTGGGGGGTAGCCAATTTTGAGGGGACGGA
AAGATCGTTTCAATGTTTTGATAGGCGTGTTAAAATCGTTACAATGTTTT
GATAGGCGTGTTTAGATTTTGGGGCTATTCTGGCTCTGCGAGGCTTAAGA
AGAGCACGGGAGACAGGTAAAGGGGGAATTACGCAACCGTTTTTTTAAAG
ACCTGGCGGCTGCCTGATGTATGCCTTCCTTGAATGTCTTCGCTAGACTC
GCAGTCCGAAAGCCATACCACTAGCGTTCACGGGGCGGTGTGGGACGGGG
GGTCTCGAGAGTTGTAAGCGGCGAGAACGGCCATTCTCCTGAAGGGGGCG
CCGGACCgattgaaaaagaaaagcgcgAGGACCG
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Coding sequence (CDS) from alignment at KK037250.1:273183..274266+

>rna8836 ID=rna8836|Name=rna8836|organism=Nannochloropsis gaditana|type=CDS|length=489bp|location=Sequence derived from alignment at KK037250.1:273183..274266+ (Nannochloropsis gaditana)
ATGCCTTTGTACGACCATGCTTCATTGATCGGAGAGGAAGATAAGGCATG
GGGGGAGAccccaggaggaggctcaCCCTTAACGAACAACTTGATAGTGC
GTGGGCCTGGGGGACAGTGCTACCCTCTCAACGTGCAGGGCGACATGCGC
GTCCAGGATCTCAAAGCCCAGGTTGCGACCGCGATAGGCGTGGCAGTTGA
GGAGCAGTACCTTCTGCATCGGTGCAAGATTTTGCAAGACCATGAGGCAT
TGGCCTCGTATGACCTTGGCACACAGCACCACCTTTccaagaaggcgatg
gcgacGTACCAAATGCCCACAGTAGAAGTGGGAATTCGTCAGCGCGGTGG
CTGTTTTATTGTCACCTTCACCCTCCTTACCATTCTCTTTTTTGCGACAC
TCTGTGCGCCTTTGACGTGTGGGACTTCCCTGTGCCTATACCtgttcctg
ctcccgccGGTCTTTATCCTGCCCTTCTTTTGCCTGTGA
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Synonyms
Publications