rna8833, rna8833 (mRNA) Nannochloropsis gaditana

Overview
Namerna8833
Unique Namerna8833
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1764
Alignment locationKK037250.1:269731..270307 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100169g3.555.mrna
Orig protein idgnl|cribi|Naga_100169g3.555
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:269731..270307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g3gene8563Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8833rna8833-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21864.1cds8803Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8833 ID=rna8833|Name=rna8833|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp
TTATATACCTCCGTGCCACAAAATGTGCCGCATAAAAGCACAACTTCCTC
GTTCAGGACGATTCGAGCTGAGCTTTTCACTGCCAACATGGGATCAAAGA
TAAAGATCTCTGTACTACCTCGTGTGGTACTGCTCGGCCGTGGGGCGCGA
CAGAGAGATCATCTCTCAAGTCCAAAAACATGCCACATGCATCCAAAAGA
ATTATGATAGGTAATGCTTCGATAGCTTGAGCATATCTGAGGTGCCACCA
TCCACAGCACTGACACAAGTCACCCATGCAAATTACTTTGTCCTGTTCCA
AATTTTGGCACATATCCAGCATTGAAGTTCAGCAGTTGCAGAGAGATGAG
ACTAGTTTTTCGAACCCTGGTCTTTGCTTCTCCGGTTTTTGTCTTTAAAG
TATCCTCCTCAATAGCCGTCAGCTTAAGCTGAGAACTTGCCATGTCTTTG
AGCACTCTGAGAATCACGTTGTTGGCATTTTCTGAGTTGTGCTCTCACCT
AGCTCGAATGATTGTAAACGCTTTTACTTTCCGTCTCATGTTGATGCAAC
GATACGACGTAGGCTAAGGCTTTATTTCCCCCCCTAGGACTGATTCTTTG
TCCAAAAAGCAGTTGTACTCGTATCTGATCGAAGAGAGTCCTTGCAGTGG
CCGTAGCCCTTCTCTCCCCTCGCTCTGTCTCATCCCCCCTCTATTTCATT
TGTAGACGACCATACAGAGATGCTCCGTGGAGTGGCGTAAAGGATACACG
CATGGCAAAGGAGAGAAAAGAAGGGATAGTTGGTCTGGCACAGGCGTCGA
GCAGTCAAACCCCCATCTGCTTTGGTTTTCACAAAAAGAGGAACACCCCC
TCAAAGCCTCCTGGTGCTATTTCCTGTGTATTTACAGCGGAGGAAGAGGA
GGAGGAAAGTAGCATCGACAACACTACGGTTGGCAAGCTGAGGTTGCAAG
CACTTACGATGAATGAAGCTAATCCTACTGATCGGCCCGCGTCGGGCCAA
ATGCTTAGCATGCACGAGAAGCGACAAGCGGATGTCAATGCGCTTCGGGA
AGCCGGCAACAATAGTGCCGCAGCTGGCAACATGCGCACAGCTTTGAACA
TCTTTGAACAAGCGCTAGGACTCGCCCCGACCGACGCAGTGCTTTACGAG
CTTAAATCCCAGTGCCACTTGTCGCTGGAAGAGTACCTGGAGGCCGTGAA
GGCAGCGAGAAAGGCGGTGGAATTGGCTCCTCATTGGAACGAAGGGGCTC
TCACCTTGGGCCGCGCTCTCATGTCTCTGGGAGAAGTCAGGTCGGCCGTG
GAGGTATTGAGCAGGTTGCTGGGCAAGGACGGTGGAAACGAGGAAGTGCG
CGAGGAGCTAATTTACGCCAATGAGGCTTTGATGGAGTTGCAGCGGCGGG
AGGCGGACTTCGATTTACAGTTGCATGGTCGGGCGGGTCTGGATAAGCGA
GAGCTGGAGGTCGCCCGCGCAAAGAAACACATGTTGTCGCGGGGCGCGAA
TGTGTCGTCGGATTGCTGGCTGGGGGGATCCGAAGGCTCAGAAGGAGAGA
ATGGGGACAGAGGGGAACGGGCGGGTGGGATGGGCGGTGGGACGGAGGAA
ATGCCACGGAGTAATTGGTGAGGACCCGTGGTGAAACGAGCACAGAAGGG
CATCCTGCTCGGCGTGGCGAGATGGACCATAGATCGGCGACAAAGGTAGG
CTGTACAAAGAACGCTCATGATTGTAAACAAACGAAAAGCAACGACTCGC
CGTGAGCAAGCATG
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protein sequence of rna8833

>rna8833-protein ID=rna8833-protein|Name=rna8833|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MLDMCQNLEQDKVICMGDLCQCCGWWHLRYAQAIEALPIIILLDACGMFL
DLRDDLSVAPHGRAVPHELCFYAAHFVARRYIKRCGLSKQKRPGRPSPNK
LQTVRCMAHCGTDVLRHLKLVYVHGRHAGLVSYPERI
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mRNA from alignment at KK037250.1:269731..270307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8833 ID=rna8833|Name=rna8833|organism=Nannochloropsis gaditana|type=mRNA|length=577bp|location=Sequence derived from alignment at KK037250.1:269731..270307+ (Nannochloropsis gaditana)
ATGCTGGATATGTGCCAAAATTTGGAACAGGACAAAGTAATTTGCATGGG
TGACTTGTGTCAGTGCTGTGGATGGTGGCACCTCAGATATGCTCAAGCTA
TCGAAGCATTACCTATCATAATTCTTTTGGATGCATGTGGCATGTTTTTG
GACTTGAGAGATGATCTCTCTGTCGCGCCCCACGGCCGAGCAGTACCACA
CGAGGTAGTACAGAGATCTTTATCTTTGATCCCATGTTGGCAGTGAAAAG
CTCAGCTCGAATCGTCCTGAACGAGGAAGTTGTGCTTTTATGCGGCACAT
TTTGTGGCACGGAGGTATATAAAGAGATGTGGACTTTCGAAACAAAAGCG
GTGATTCTGAGAAATTAGCGGCATCGTCCCGCCAAGCGGATGGTATTGCA
TGTTAGTCAAGTTGGCGGCGGAATGACTGAGCATGAAGGCCGGGACGCCC
TTCTCCAAACAAATTGCAAACAGTCAGGTGCATGGCCCACTGTGGCACGG
ACGTCTTGCGGCACTTGAAGCTCGTGTACGTGCATGGTCGCCATGCTGGT
CTCGTTTCCTATCCTGAGCGTATTTAG
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Coding sequence (CDS) from alignment at KK037250.1:269731..270307+

>rna8833 ID=rna8833|Name=rna8833|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at KK037250.1:269731..270307+ (Nannochloropsis gaditana)
ATGCTGGATATGTGCCAAAATTTGGAACAGGACAAAGTAATTTGCATGGG
TGACTTGTGTCAGTGCTGTGGATGGTGGCACCTCAGATATGCTCAAGCTA
TCGAAGCATTACCTATCATAATTCTTTTGGATGCATGTGGCATGTTTTTG
GACTTGAGAGATGATCTCTCTGTCGCGCCCCACGGCCGAGCAGTACCACA
CGAGTTGTGCTTTTATGCGGCACATTTTGTGGCACGGAGGTATATAAAGA
GATGTGGACTTTCGAAACAAAAGCGGCCGGGACGCCCTTCTCCAAACAAA
TTGCAAACAGTCAGGTGCATGGCCCACTGTGGCACGGACGTCTTGCGGCA
CTTGAAGCTCGTGTACGTGCATGGTCGCCATGCTGGTCTCGTTTCCTATC
CTGAGCGTATTTAGATGCTGGATATGTGCCAAAATTTGGAACAGGACAAA
GTAATTTGCATGGGTGACTTGTGTCAGTGCTGTGGATGGTGGCACCTCAG
ATATGCTCAAGCTATCGAAGCATTACCTATCATAATTCTTTTGGATGCAT
GTGGCATGTTTTTGGACTTGAGAGATGATCTCTCTGTCGCGCCCCACGGC
CGAGCAGTACCACACGAGTTGTGCTTTTATGCGGCACATTTTGTGGCACG
GAGGTATATAAAGAGATGTGGACTTTCGAAACAAAAGCGGCCGGGACGCC
CTTCTCCAAACAAATTGCAAACAGTCAGGTGCATGGCCCACTGTGGCACG
GACGTCTTGCGGCACTTGAAGCTCGTGTACGTGCATGGTCGCCATGCTGG
TCTCGTTTCCTATCCTGAGCGTATTTAGATGCTGGATATGTGCCAAAATT
TGGAACAGGACAAAGTAATTTGCATGGGTGACTTGTGTCAGTGCTGTGGA
TGGTGGCACCTCAGATATGCTCAAGCTATCGAAGCATTACCTATCATAAT
TCTTTTGGATGCATGTGGCATGTTTTTGGACTTGAGAGATGATCTCTCTG
TCGCGCCCCACGGCCGAGCAGTACCACACGAGTTGTGCTTTTATGCGGCA
CATTTTGTGGCACGGAGGTATATAAAGAGATGTGGACTTTCGAAACAAAA
GCGGCCGGGACGCCCTTCTCCAAACAAATTGCAAACAGTCAGGTGCATGG
CCCACTGTGGCACGGACGTCTTGCGGCACTTGAAGCTCGTGTACGTGCAT
GGTCGCCATGCTGGTCTCGTTTCCTATCCTGAGCGTATTTAG
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Synonyms
Publications