rna8825, rna8825 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8825
Unique Name	rna8825
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1422
Alignment location	KK037250.1:254127..256427 +

Link to JBrowse

Properties


Property Name	Value
Product	epidermal retinol dehydrogenase 2
Orig transcript id	gnl\|cribi\|Naga_100159g6.6560.mrna
Orig protein id	gnl\|cribi\|Naga_100159g6.6560
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:254127..256427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g6	gene8556	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8825	rna8825-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21882.1	cds8795	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:254127..256427+
coding sequence from alignment at KK037250.1:254127..256427+

mRNA sequence

>rna8825 ID=rna8825|Name=rna8825|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp
TCGTGCGGACTTGGATTTTTTTACACTCTGTGTGTTCACCACATGACATC
TGTGCATTTGCGTTTATGGAGATGCTTTGCGTGGTATGTAAATGGCTGGG
CGGGGCTGTTGCCTCCCTACCCTTTGCCCTCGCCGAGGAAGGGTGGGTGT
GGTGGATGGCGCAGTCACGTGCAGCCTGGAGGTGTCGCACTTCCATCGTG
ATCCCTCTACTCGAATGTTACCTATATGTGTAGTCCTATGAGGGGCCATG
GAAGGAGTGGAAGCTTAATTTGTTCGGGCATGCCACTCTGTCCCTCGTTT
ATCTCCCCACCCACCACCTCCCACGCAAACGCTTTTCCCTTCTCATCTCT
TATTTTAAAGGAGGCCGTAGCTCTTTACACACTGCCACCATGAAGCTCAA
CATTGCCAACCCTCAGACGGGTCAGCAGCATGTGGTAGAAATTGACGACG
AGAAGCGTCTGCGAGCTTTCTACGACCGGCGTATTTCGCAGGAGGTGGAC
GGGGAACACATTGGGGACGAGTTCAAGGGCTATGTATTCAAAATCTCTGG
CGGCAACGACAAACAGGGGTTCCCCATGAAGCAGGGCGTGCTCACCGACC
AGCGCGTCCGTCTCCTCTTGCGCAAGGGCTTGTCCTGCTATCGAGCCCGC
CGAAAGGGTGAGCGCAAGCGCAAGTCTGTCCGCGGCGCTATCGTCGGACC
TGACCTGTCGGTGCTGAACCTAGTTTTGGTGAAGCGGGGGGAGGAGGATG
TGGTCGGCCTCACAGACAGTGCGGTCCCTCGTCGCCTGGGCCCCAAGCGC
GCGAACAACATTCGCAAGCTTTTCAACTTGTCCAAAGATGCAGACGTCAC
CACATATCCTGTTGAGCGCAAGTTTGAGAATAAGAAGGGAAAAACTGTCG
TCAAGAAACCCAAAATCCAGCGGCTCATCACACCCCTTCGTCTCCAGCAT
AAGCGCCGGCGTTTGGAAGCGAAAAAGGCAGCCACGACCAAGGCTAAAGC
TGAGGCCGCAGAGTACCATCGCATCTTCCAGCAGCGCCTCAATGAACGGA
AAGAGTCTCGCCGGTCCGCCATCTCCAAGCGTCGTTCCTCCAGACGTGCG
TCTGCCAAGGTCGAATAAACCCTGCACACATCGTCGGAAATTGACAAAAA
ATATCAGGAAGTATGATTGTTCAGTTGAGCACTGGCGACGTTTATCGACA
GGATAGAGGTTAATCGATTGATGTAGTGAGAGAAGCAATGCATCTTCAGC
ATTGGAGAAAGAAAGCACAGAAATGTGGTGCAGTGTTGGCGGTGTATTAG
GCCCGCTCATACTCATGGAAAGTGAGGACAGGCGAGGACTGAAACGCTGC
TGGGATGTTCAGCAATGCTGGGGGTGCATTTGAACGAAGTCTCAAAGAAG
AGAATAACCGAACACAACCAGC

protein sequence of rna8825

>rna8825-protein ID=rna8825-protein|Name=rna8825|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MGHDPRRNLGVAWRARELWRILSIALIYFWSPHTLTVEETRTSRQASFPI
TDKPRLQSQGVPAAYKMSPWKETVADVWAHIYGFIQCVGAILWSLVLLQV
EYFDLLFPKRKSFRGETILITGGASGIGRLMALKFAAYENTTIIIWDLNE
GAMKAVAREVEGIGARVFTYKVDVSKRERVYEVAKQMRKDVGKSVSVLVN
NAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTIKAFLPAMVEANHGHIIT
VASTAGLVGVDGLADYCTSKAAAISFHEGIRTEVRRLKRPGIRMTLVNPY
FIDTGMFTGAKTKAPILLPILQPEYVATSIIDAAEKNRNLLNLPRYTYIL
MVTNGVPALVRDFIYDFMGIGENMADFKQTRTKSLKEQ

mRNA from alignment at KK037250.1:254127..256427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8825 ID=rna8825|Name=rna8825|organism=Nannochloropsis gaditana|type=mRNA|length=2301bp|location=Sequence derived from alignment at KK037250.1:254127..256427+ (Nannochloropsis gaditana)
AACTTAGTCCGCTTCCCTCACGTTCGTACacttgcctgcctccctttgcG
TGCCCCGGGCATGGGACACGACCCACGCAGAAATTTGGGTGTAGCTTGGA
GAGCACGTGAATTGTGGCGGATATTATCCATCGCCTTGATTTATTTTTGG
AGCCCACACACACTCACCGTAGAGGAAACTCGCACCTCGCGCCaagcttc
ctttcccatcaCCGACAAACCTCGCCTTCAAAGTCAGGGGGTGCCAGCAG
CCTATAAAATGAGCCCTTGGAAAGAAACCGTCGCAGACGTATGGGCGCAC
ATCTACGGCTTTATACAATGTGTAGGGGCCATTCTTTGGTCACTGGTTTT
ACTCCAGGTCGAATATTTTGACCTTCTATTCCCTAAACGGAAGAGCTTCC
GCGGCGAGACTATACTTATCACAGGTACGCGACACCCGCCTTTCGAGTGA
GCTTATCGGCATCTTAATGCTAAATGTGTTGCTATGTAAAATACCATGGA
TTTTttcttgctgttgctgaTAAGTCTTCCGCTTCTCTTGTTCACAGGCG
GTGCAAGCGGCATAGGACGTCTCATGGCCTTAAAGGTGAATTTTTCATAA
GAGGGGTGACGGGGGAAGCGGGGCTGAAAATAATTGGCCACTGATAGATT
GTTGTGCTTTGTTTGTGATGATTGGCCGCTGTGTGCGTGCTGTCCACGTC
ACAGCCTGGGCTAGAATTCacaccttccttctttgcccGCAAGCGCTCTA
CCCTCATTGATTTGCACATCTGCTCCTTTTTTATTTCTCCTCACGACAGT
TTGCAGCCTATGAAAATACCACCATCATCATTTGGGACCTGAATGAGGGA
GCCATGAAGGCAGTAGCGCGGGAAGTCGAAGGCATTGGCGCCCGGGTCTT
CACCTACAAGGTGGACGTGAGCAAGCGGGAGCGCGTCTACGAGGTGGCGA
AGCAGATGCGAAAAGACGTCGGGAAGAGCGTGAGTGTGCTGGTGAATAAT
GCAGGCATTGTGGCCGGCAAGCCTTTCTTGGAAGGGGACGACGCTTACTC
GCTCAAGACCATGGAGGTGAACGTGATCGCCCACTTCTGGACGATCAAGG
CCTTCTTGCCggccatggtggaggccaaCCACGGGCACATCATCACCGTG
GCGAGCACGGCGGGTCTGGTGGGAGTGGACGGGCTGGCTGACTACTGCAc
gagcaaggcggcggccatctCTTTCCACGAGGGAATTCGCACCGAAGTGC
GACGCTTGAAACGCCCGGGCATCCGCATGACCCTTGTCAACCCCTACTTT
ATCGACACGGGCATGTTCACCGGCGCCAAGACCAAGGCACCCATCCTCTT
GCCGATCCTGCAACCTGAGTATGTGGCGACCTCCATCATCGACGCGGCAG
AGAAGAACAGGAACTTGCTGAACCTGCCCCGGTACACGTACATCCTGATG
GTGACCAACGGCGTGCCGGCCTTGGTTCGCGATTTTATTTACGACTTTAT
GGGCATCGGAGAGAATATGGCGGACTTCAAGCAGACACGGACAAAGTCGC
TGAAGGAGCAGTAGGttgatgggggggggaaggacaaggacgccCGGCGT
TAAAGGGGGGGACACGCAGGCGCAACGTTTCCCGAACTCCGCCACTGGGT
AGTGCTTGTCACAACAAAGCAACACGTCAGGAAACCAAAGACAAAATTAC
GGTCCAAAATGTAGATAGTACATGGTATGAGAGGGGCAACAGAAAGAGAG
CGGAGGCTGAGTGACGCAGAGGGCGGCCAGGAGGATGGatcgaggacggg
ggcagcGAGGGCGTTGTGTGGTAGGGATAGGTGTCTGGAGCCTGATGGTT
GAGAAGGCGAAAGCCCCGCCCGATTCGAGTAGGCTGTCTCGTATCGGCTC
GCACGTGACAATATGAAATGATATCCAGTAAATTAAATGACAAATGCACA
CCATTGAGCGACGCCGAGGAGAAGACGCCACTTttgagggagcgagaaaa
GAGTGCGAGCGCCGCCAACGTTTCGTGTCCAAAGCTACCGAGGATAAGCT
TAGGGCCGTGTCCGCGTGTACGGTGAaaagatgagaaagaaaCATTTACC
CCTAGAAAACGACCCGGACTTCCAAGCTTGTCGAGACGGTCGTCACTCAC
TGGCGATGCCTGGTCCGAATCACGGGCCTCCGCATAATTGTACGTGAGCC
ATTCATTAAAGTAAAGTATGCGGTGCAACCACCACGTTCTACCCAAAGAG
TCGATGCATTGAGTGGGAGAAGACACACGACAGGAGCCAAACGGGCAGCG
C

Coding sequence (CDS) from alignment at KK037250.1:254127..256427+

>rna8825 ID=rna8825|Name=rna8825|organism=Nannochloropsis gaditana|type=CDS|length=3501bp|location=Sequence derived from alignment at KK037250.1:254127..256427+ (Nannochloropsis gaditana)
ATGGGACACGACCCACGCAGAAATTTGGGTGTAGCTTGGAGAGCACGTGA
ATTGTGGCGGATATTATCCATCGCCTTGATTTATTTTTGGAGCCCACACA
CACTCACCGTAGAGGAAACTCGCACCTCGCGCCaagcttcctttcccatc
aCCGACAAACCTCGCCTTCAAAGTCAGGGGGTGCCAGCAGCCTATAAAAT
GAGCCCTTGGAAAGAAACCGTCGCAGACGTATGGGCGCACATCTACGGCT
TTATACAATGTGTAGGGGCCATTCTTTGGTCACTGGTTTTACTCCAGGTC
GAATATTTTGACCTTCTATTCCCTAAACGGAAGAGCTTCCGCGGCGAGAC
TATACTTATCACAGGCGGTGCAAGCGGCATAGGACGTCTCATGGCCTTAA
AGTTTGCAGCCTATGAAAATACCACCATCATCATTTGGGACCTGAATGAG
GGAGCCATGAAGGCAGTAGCGCGGGAAGTCGAAGGCATTGGCGCCCGGGT
CTTCACCTACAAGGTGGACGTGAGCAAGCGGGAGCGCGTCTACGAGGTGG
CGAAGCAGATGCGAAAAGACGTCGGGAAGAGCGTGAGTGTGCTGGTGAAT
AATGCAGGCATTGTGGCCGGCAAGCCTTTCTTGGAAGGGGACGACGCTTA
CTCGCTCAAGACCATGGAGGTGAACGTGATCGCCCACTTCTGGACGATCA
AGGCCTTCTTGCCggccatggtggaggccaaCCACGGGCACATCATCACC
GTGGCGAGCACGGCGGGTCTGGTGGGAGTGGACGGGCTGGCTGACTACTG
CAcgagcaaggcggcggccatctCTTTCCACGAGGGAATTCGCACCGAAG
TGCGACGCTTGAAACGCCCGGGCATCCGCATGACCCTTGTCAACCCCTAC
TTTATCGACACGGGCATGTTCACCGGCGCCAAGACCAAGGCACCCATCCT
CTTGCCGATCCTGCAACCTGAGTATGTGGCGACCTCCATCATCGACGCGG
CAGAGAAGAACAGGAACTTGCTGAACCTGCCCCGGTACACGTACATCCTG
ATGGTGACCAACGGCGTGCCGGCCTTGGTTCGCGATTTTATTTACGACTT
TATGGGCATCGGAGAGAATATGGCGGACTTCAAGCAGACACGGACAAAGT
CGCTGAAGGAGCAGTAGATGGGACACGACCCACGCAGAAATTTGGGTGTA
GCTTGGAGAGCACGTGAATTGTGGCGGATATTATCCATCGCCTTGATTTA
TTTTTGGAGCCCACACACACTCACCGTAGAGGAAACTCGCACCTCGCGCC
aagcttcctttcccatcaCCGACAAACCTCGCCTTCAAAGTCAGGGGGTG
CCAGCAGCCTATAAAATGAGCCCTTGGAAAGAAACCGTCGCAGACGTATG
GGCGCACATCTACGGCTTTATACAATGTGTAGGGGCCATTCTTTGGTCAC
TGGTTTTACTCCAGGTCGAATATTTTGACCTTCTATTCCCTAAACGGAAG
AGCTTCCGCGGCGAGACTATACTTATCACAGGCGGTGCAAGCGGCATAGG
ACGTCTCATGGCCTTAAAGTTTGCAGCCTATGAAAATACCACCATCATCA
TTTGGGACCTGAATGAGGGAGCCATGAAGGCAGTAGCGCGGGAAGTCGAA
GGCATTGGCGCCCGGGTCTTCACCTACAAGGTGGACGTGAGCAAGCGGGA
GCGCGTCTACGAGGTGGCGAAGCAGATGCGAAAAGACGTCGGGAAGAGCG
TGAGTGTGCTGGTGAATAATGCAGGCATTGTGGCCGGCAAGCCTTTCTTG
GAAGGGGACGACGCTTACTCGCTCAAGACCATGGAGGTGAACGTGATCGC
CCACTTCTGGACGATCAAGGCCTTCTTGCCggccatggtggaggccaaCC
ACGGGCACATCATCACCGTGGCGAGCACGGCGGGTCTGGTGGGAGTGGAC
GGGCTGGCTGACTACTGCAcgagcaaggcggcggccatctCTTTCCACGA
GGGAATTCGCACCGAAGTGCGACGCTTGAAACGCCCGGGCATCCGCATGA
CCCTTGTCAACCCCTACTTTATCGACACGGGCATGTTCACCGGCGCCAAG
ACCAAGGCACCCATCCTCTTGCCGATCCTGCAACCTGAGTATGTGGCGAC
CTCCATCATCGACGCGGCAGAGAAGAACAGGAACTTGCTGAACCTGCCCC
GGTACACGTACATCCTGATGGTGACCAACGGCGTGCCGGCCTTGGTTCGC
GATTTTATTTACGACTTTATGGGCATCGGAGAGAATATGGCGGACTTCAA
GCAGACACGGACAAAGTCGCTGAAGGAGCAGTAGATGGGACACGACCCAC
GCAGAAATTTGGGTGTAGCTTGGAGAGCACGTGAATTGTGGCGGATATTA
TCCATCGCCTTGATTTATTTTTGGAGCCCACACACACTCACCGTAGAGGA
AACTCGCACCTCGCGCCaagcttcctttcccatcaCCGACAAACCTCGCC
TTCAAAGTCAGGGGGTGCCAGCAGCCTATAAAATGAGCCCTTGGAAAGAA
ACCGTCGCAGACGTATGGGCGCACATCTACGGCTTTATACAATGTGTAGG
GGCCATTCTTTGGTCACTGGTTTTACTCCAGGTCGAATATTTTGACCTTC
TATTCCCTAAACGGAAGAGCTTCCGCGGCGAGACTATACTTATCACAGGC
GGTGCAAGCGGCATAGGACGTCTCATGGCCTTAAAGTTTGCAGCCTATGA
AAATACCACCATCATCATTTGGGACCTGAATGAGGGAGCCATGAAGGCAG
TAGCGCGGGAAGTCGAAGGCATTGGCGCCCGGGTCTTCACCTACAAGGTG
GACGTGAGCAAGCGGGAGCGCGTCTACGAGGTGGCGAAGCAGATGCGAAA
AGACGTCGGGAAGAGCGTGAGTGTGCTGGTGAATAATGCAGGCATTGTGG
CCGGCAAGCCTTTCTTGGAAGGGGACGACGCTTACTCGCTCAAGACCATG
GAGGTGAACGTGATCGCCCACTTCTGGACGATCAAGGCCTTCTTGCCggc
catggtggaggccaaCCACGGGCACATCATCACCGTGGCGAGCACGGCGG
GTCTGGTGGGAGTGGACGGGCTGGCTGACTACTGCAcgagcaaggcggcg
gccatctCTTTCCACGAGGGAATTCGCACCGAAGTGCGACGCTTGAAACG
CCCGGGCATCCGCATGACCCTTGTCAACCCCTACTTTATCGACACGGGCA
TGTTCACCGGCGCCAAGACCAAGGCACCCATCCTCTTGCCGATCCTGCAA
CCTGAGTATGTGGCGACCTCCATCATCGACGCGGCAGAGAAGAACAGGAA
CTTGCTGAACCTGCCCCGGTACACGTACATCCTGATGGTGACCAACGGCG
TGCCGGCCTTGGTTCGCGATTTTATTTACGACTTTATGGGCATCGGAGAG
AATATGGCGGACTTCAAGCAGACACGGACAAAGTCGCTGAAGGAGCAGTA
G

Synonyms

Publications