rna8821, rna8821 (mRNA) Nannochloropsis gaditana

Overview
Namerna8821
Unique Namerna8821
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1896
Alignment locationKK037250.1:248023..248842 -

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Properties
Property NameValue
Productflagellar associated protein
Orig transcript idgnl|cribi|Naga_100159g11.6565.mrna
Orig protein idgnl|cribi|Naga_100159g11.6565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:248023..248842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100159g11gene8552Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21887.1cds8791Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8821rna8821-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8821 ID=rna8821|Name=rna8821|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp
TCCCTCCACTCGCACCCTGGTGCTACTTCCTTTTTTCCCCTAGTGAATCT
CACGCAGCTTCATGGACTTAATCTCTCCTTTACTTTATTTGCTGCTTCAG
GGAAGAGTACATGGGATGGACGGGCCTACTGATGCCGTTGAAGACGGCAA
TCGCTGCTTTTGCTTTTCAAAAGCAAGCAAGTCAATCCTCAACAATTCTG
CAAAAATTGGGTCCTCGTTTGTCTGCCGTTTACCGCCTTGTACCTTCACA
TGCGAAGGGAATTGTAGATGTGGGGTGTGATCATGCACTGCTAGGGCTTG
CCTTGGCTGCGGGTCGAGATCATCCAAATTTGCGCAAAGTGATAGGTATC
GACAAAGCGCTAGACCCTCTAGACGTGGCAAGGCAAAATCTAAGAGAGCA
CGCGTACTCACGTATAGAAAAATATCCTCTGACAGCATCACTAGAGCTAC
GACATGGTGACGGTCTTGAGGCCTTGATTCCTGAAGATGTTAACCTTGTC
GATACACTATGTATGGCCGGGCTTGGCAGCGGCACAATTATAGAAGTGTT
GAGCTCACTAAAATATGTCAGGGAAGGGGCAAAGTTTGAATATCTTGTCT
TGCAACCCTTTGACTCACGACCGCATTATGTAAATGAAGTCCGTGATTGT
GTTAAGTCACAGGGATTTAGCATCCAGCAGGAGCGCATTGATTATGTCAA
TAGCCGCTGGTTCGTGACCATGGCCGCGAGTGTCAATGCCAACAAAGCAG
ACAAAGCTGGGCAATGTGAAAAAGTTAGATATAATAGCACATGCATGCTC
GGAGACGCATTGATGCGCCTTGCGCGGGAGGACCGGCGTACACACCAAAT
TTACGCTGACTACCTTTGCCATCATCGAGACTGGTATGCTAGCATTTGCA
AAGCGAGGAATACGAGGATGCCACCAGAACATGATTATGTGTCTCAGTTC
TTACGCGCTATAGAGCAGGAGATATCAGCATTACGTGTGCATTAGACAAG
AAATGTTTGGTTAGGGTTAGGGTTAAGAAGCGTGGTGTCCGAGGACAAAG
GGATAGTACTTTTAAAGTTTTCTGAATAGCGTTTTCTTAATTGTCAAGAC
ACTCTCTGATTGTATCATATTAAGTATATAGCTCTAGCTATTGTGACATA
CTAAAAATTCTTTCTTTTTACCGAAGTCGAAGGGCCTTCTGCCTTCCCAA
AGCGGACCCCCCCGCCATTTCGCTTCCTTGAATCGACCTGCTTACCGCAG
GCACTGACGGCATTGTAAAAACCAGGTCCCCCCCCACTTGACGTTAGGTC
TGGGGTTAAATCGCTTGTGAAGCTCTGCCGCTTTCGGCCTTTTCCGAACG
TAGAAACAGGTGGACTGGCCCTGCTGGACAGAACTTGTGGGCCTAACGTA
TCTTTGAAATGATAGTGGCCAGGACCTGGCTGTATACTCAATTTATTACG
TGGAGAACAGCCTTTTGGAAAGGAAAATTGTGGCGCGGCTCGATGTTTAG
GGTTACTCAGCAACCCTCCTTTCCGGCTTTGTGAGGAAAGGTACGCTCCG
GGACCTGGTTCATCGACGCACGCTCTATCCTTTGTGAAGATTTTACTCCC
AAATCCCTCTCTTCCGCGCAGAGAAAAGCCATTCGTTGATCTGATCCTGG
AGTCAGCCACATGCCCTGACAGAGTTGACTTCAGATTGTAAGCGCCAGGT
CCTGGCGTGTCGTTACCCGAATGTGAAGGAGCAATGGTGTCACGTGGGGA
GGATCCAAAACCAAAAGATGGGGTCGCGGGAAATATTCCTTTGTATGAGG
TTATTATCTTGTCCTCCGCCATGTTGTTTACACTGGTCTTAGCCATGGCT
AGGGGTAGATGTGCATAAGCTGGCATTCGTTTTATTTTGATCGGAA
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protein sequence of rna8821

>rna8821-protein ID=rna8821-protein|Name=rna8821|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MPAYAHLPLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAP
SHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKD
RACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQP
GPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGG
PGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPSTSVKRKNF
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mRNA from alignment at KK037250.1:248023..248842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8821 ID=rna8821|Name=rna8821|organism=Nannochloropsis gaditana|type=mRNA|length=820bp|location=Sequence derived from alignment at KK037250.1:248023..248842- (Nannochloropsis gaditana)
TGTAGGCACATATTATTGAACTTCAACACGCTCCTCAAATAGCAACTTCC
GATCAAAATAAAACGAATGCCAGCTTATGCACATCTACCCCTAGCCATGG
CTAAGACCAGTGTAAACAACATGGCGGAGGACAAGATAATAACCTCATAC
AAAGGAATATTTCCCGCGACCCCATCTTTTGGTTTTGGATCCTCCCCACG
TGACACCATTGCTCCTTCACATTCGGGTAACGACACGCCAGGACCTGGCG
CTTACAATCTGAAGTCAACTCTGTCAGGGCATGTGGCTGACTCCAGGATC
AGATCAACGAATGGCTTTTCTCTGCGCGGAAGAGAGGGATTTGGGAGTAA
AATCTTCACAAAGGATAGAGCGTGCGTCGATGAACCAGGTCCCGGAGCGT
ACCTTTCCTCACAAAGCCGGAAAGGAGGGTTGCTGAGTAACCCTAAACAT
CGAGCCGCGCCACAATTTTCCTTTCCAAAAGGCTGTTCTCCACGTAATAA
ATTGAGTATACAGCCAGGTCCTGGCCACTATCATTTCAAAGATACGTTAG
GCCCACAAGTTCTGTCCAGCAGGGCCAGTCCACCTGTTTCTACGTTCGGA
AAAGGCCGAAAGCGGCAGAGCTTCACAAGCGATTTAACCCCAGACCTAAC
GTCAAGTGGGGGGGGACCTGGTTTTTACAATGCCGTCAGTGCCTGCGGTA
AGCAGGTCGATTCAAGGAAGCGAAATGGCGGGGGGGTCCGCTTTGGGAAG
GCAGAAGGCCCTTCGACTTCGGTAAAAAGAAAGAATTTTTAGTATGTCAC
AATAGCTAGAGCTATATACT
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Coding sequence (CDS) from alignment at KK037250.1:248023..248842-

>rna8821 ID=rna8821|Name=rna8821|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at KK037250.1:248023..248842- (Nannochloropsis gaditana)
ATGCCAGCTTATGCACATCTACCCCTAGCCATGGCTAAGACCAGTGTAAA
CAACATGGCGGAGGACAAGATAATAACCTCATACAAAGGAATATTTCCCG
CGACCCCATCTTTTGGTTTTGGATCCTCCCCACGTGACACCATTGCTCCT
TCACATTCGGGTAACGACACGCCAGGACCTGGCGCTTACAATCTGAAGTC
AACTCTGTCAGGGCATGTGGCTGACTCCAGGATCAGATCAACGAATGGCT
TTTCTCTGCGCGGAAGAGAGGGATTTGGGAGTAAAATCTTCACAAAGGAT
AGAGCGTGCGTCGATGAACCAGGTCCCGGAGCGTACCTTTCCTCACAAAG
CCGGAAAGGAGGGTTGCTGAGTAACCCTAAACATCGAGCCGCGCCACAAT
TTTCCTTTCCAAAAGGCTGTTCTCCACGTAATAAATTGAGTATACAGCCA
GGTCCTGGCCACTATCATTTCAAAGATACGTTAGGCCCACAAGTTCTGTC
CAGCAGGGCCAGTCCACCTGTTTCTACGTTCGGAAAAGGCCGAAAGCGGC
AGAGCTTCACAAGCGATTTAACCCCAGACCTAACGTCAAGTGGGGGGGGA
CCTGGTTTTTACAATGCCGTCAGTGCCTGCGGTAAGCAGGTCGATTCAAG
GAAGCGAAATGGCGGGGGGGTCCGCTTTGGGAAGGCAGAAGGCCCTTCGA
CTTCGGTAAAAAGAAAGAATTTTTAG
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Synonyms
Publications