EWM21887.1, cds8791 (CDS) Nannochloropsis gaditana

Overview
NameEWM21887.1
Unique Namecds8791
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:248051..248776 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21887.1
Productflagellar associated protein
Orig transcript idgnl|cribi|Naga_100159g11.6565.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:248051..248776 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR010736SHIPPO-rpt
Homology
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|585102231|gb|EWM21887.1| (flagellar associated protein [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 3.343e-173
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MPAYAHLPLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPSTSVKRKNF 241
            MPAYAHLPLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPSTSVKRKNF
Sbjct:    1 MPAYAHLPLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPSTSVKRKNF 241          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|676394599|ref|XP_009040577.1| (hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens] >gi|323448768|gb|EGB04662.1| hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens])

HSP 1 Score: 112.079 bits (279), Expect = 1.650e-25
Identity = 80/206 (38.83%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   40 FGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIF-TKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDL--TSSGGGPGFYNA-VSACGKQVDSRKRNGGGVRFGK-AEGPSTSVKRKN 240
            FGS+ R  ++       TPG GAY++K+T+ G+V DS+I S   FSLR RE FG+ +    D     +PGPG Y   Q        NPK   AP++SFPKG   ++K  + PGPG Y    ++G QVLS++++     FG+G +         P L    +  GPG Y   +SAC KQVDSRK+  G V+F + A   +TS   K+
Sbjct:   95 FGSAIRPRLS---EAEPTPGAGAYSIKTTILGNVPDSKIHSAPQFSLRSREKFGNPMLRALDTETARQPGPGWYTPKQV-------NPKDDNAPKYSFPKGHFIKDKARLSPGPGAYVIPSSVGKQVLSTKSNNNGMGFGQGER---------PPLLRVHNDVGPGEYGVGISACKKQVDSRKKTSGFVKFSRCARDKATSTSAKD 281          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|299117604|emb|CBN75446.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 1.450e-24
Identity = 84/229 (36.68%), Postives = 117/229 (51.09%), Query Frame = 0
Query:    6 HLPLAMAKTSVNNMAEDK-IITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGS-KIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPK--GCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACG-KQVDSRKRNGGGVRFGKA 229
            +LP A    S + +   + ++ SY     + P  GFG++ R  +     G + PGPGAY LKST+  +   S IRS   F++RGRE FGS  +   DR C  EPGPG Y  +       + NP+   AP+++FPK  G   R  +   PGPG Y+    +G QVLS++ S     FG G  R       T D+     GPG Y+   + G +QVDSR+ N  G +F KA
Sbjct:   22 YLPAATKSKSSDILKMRRTLMDSYNETVRSAPKIGFGTAGRPPL--QDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSFTMRGREKFGSPDLKAIDRTCQLEPGPGHYKLA-------IVNPQEENAPKYTFPKDAGAMIRENVVRAPGPGRYNLHPGVGKQVLSTKRSHNGVGFGTG-NRPDLLVQSTADV-----GPGEYSIPGSTGERQVDSRRCNKSGAKFSKA 234          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|635363618|emb|CCI47866.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 83.5741 bits (205), Expect = 1.378e-15
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 0
Query:   40 FGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQ-PGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFGKAEGPSTSVKRK 239
            FGSSPR    PS+ G  +PGPG+Y + STL G    S I+     SL GR+ FGS I  K  A    PGPG Y S        + N + + AP+FS  K  S     + + PGPG Y   +++GP  LS++ S P S F +G +R   T + TPD+     GPG Y   V++ GKQ  S         FG  E   TS  ++
Sbjct:   50 FGSSPRP--KPSN-GAKSPGPGSYQIPSTL-GKAVLSTIQQAPSCSLSGRDKFGSAIDIKLAA--SSPGPGDYSSK-------VVNLREQNAPKFSLGKKWSSNADANKKVPGPGAYEASNSIGPTFLSTQKSNPASAFPRG-ERTPLTPNSTPDV-----GPGQYGVVVTSVGKQTISTLSTPASFSFGTQERSKTSKTKE 232          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|325185193|emb|CCA19683.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 83.5741 bits (205), Expect = 1.572e-15
Identity = 73/193 (37.82%), Postives = 96/193 (49.74%), Query Frame = 0
Query:   40 FGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSF-PKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAV-SACGKQVDSRKRNGGGVRFGKAE 230
            FGSSPR    PS+    +PGPG+Y + STL G    S ++     SL GR+ FGS I  K+ A    PGPG Y S        + N + + AP+FS   K  S  +     PGPG Y   + +GP  LS++ S P S F +G +R S T + TPD+     GPG Y  V ++ GKQ  S         FG  E
Sbjct:   50 FGSSPRP--KPSNDAK-SPGPGSYQIPSTL-GKAVLSTVQQAPSCSLSGRDKFGSAIDVKNAA--SSPGPGDYTSK-------VVNLREQNAPKFSLGKKWNSSADSNKKGPGPGAYETANCIGPTFLSTQKSNPASAFPRG-ERTSLTQNNTPDV-----GPGQYGVVLTSVGKQTISTLSTPASFSFGTQE 223          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|970617821|gb|KUF65898.1| (Outer dense fiber protein 3 [Phytophthora nicotianae] >gi|970662068|gb|KUF99486.1| hypothetical protein AM588_10010909 [Phytophthora nicotianae] >gi|970664069|gb|KUG01091.1| Outer dense fiber protein 3 [Phytophthora nicotianae])

HSP 1 Score: 82.8037 bits (203), Expect = 1.661e-15
Identity = 75/204 (36.76%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   25 ITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFG 227
            + S K   P T  FG G+ PR     +H+G+ +PGPGAY + S++ G    S +      S+ GRE FGS    K  A    PGPG Y +        + NP+ RAAP +S  K  SP       PGPG Y    T+G  VLS++ S PVS+F K  ++   TS  T D+     GPG Y   V A G+Q  S   +     FG
Sbjct:   13 VDSRKATAPYT-VFGSGTRPR-----THNGSKSPGPGAYQIPSSI-GKPVLSTMAQAPSCSISGREKFGSTADLKTSAKF--PGPGDYSTH-------IVNPRERAAPSYSLGKKWSPMAGDKKFPGPGAYESSPTIGRTVLSTQKSNPVSSFPKVERKPLHTSS-TADV-----GPGQYGVVVEAVGRQAISTVSSAASFSFG 194          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|301107694|ref|XP_002902929.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098047|gb|EEY56099.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 83.1889 bits (204), Expect = 1.765e-15
Identity = 75/223 (33.63%), Postives = 104/223 (46.64%), Query Frame = 0
Query:    6 HLPLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFG 227
            H      K+SV    + +  T+   +F      G G+ PR     +H+G+ +PGPGAY + S++ G    S +      S+ GRE FGS    K  A    PGPG Y +        + NP+ RAAP +S  K  SP       PGPG Y    T+G  VLS++ S PVS+F K  +R+   +  T D+     GPG Y   V A G+Q  S   +     FG
Sbjct:   21 HQAFTDIKSSVGEQVDSRKTTAPYTVF------GSGTRPR-----THNGSKSPGPGAYQIPSSI-GKPVLSTMAMAPSCSISGREKFGSTADLKTSAKF--PGPGDYNTH-------IVNPRERAAPSYSLGKKWSPMAGDKKFPGPGAYESSPTIGRTVLSTQKSNPVSSFPK-VERKPLNASSTADV-----GPGQYGVVVEAVGRQTVSTVHSAAAFSFG 216          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|570312258|gb|ETO60206.1| (hypothetical protein F444_21562 [Phytophthora parasitica P1976])

HSP 1 Score: 82.8037 bits (203), Expect = 2.384e-15
Identity = 75/204 (36.76%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   25 ITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFG 227
            + S K   P T  FG G+ PR     +H+G+ +PGPGAY + S++ G    S +      S+ GRE FGS    K  A    PGPG Y +        + NP+ RAAP +S  K  SP       PGPG Y    T+G  VLS++ S PVS+F K  ++   TS  T D+     GPG Y   V A G+Q  S   +     FG
Sbjct:   34 VDSRKATAPYT-VFGSGTRPR-----THNGSKSPGPGAYQIPSSI-GKPVLSTMAQAPSCSISGREKFGSTADLKTSAKF--PGPGDYSTH-------IVNPRERAAPSYSLGKKWSPMAGDKKFPGPGAYESSPTIGRTVLSTQKSNPVSSFPKVERKPLHTSS-TADV-----GPGQYGVVVEAVGRQAISTVSSAASFSFG 215          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|675179081|ref|XP_008898425.1| (hypothetical protein PPTG_06276 [Phytophthora parasitica INRA-310] >gi|566008569|gb|ETI31480.1| hypothetical protein F443_21547 [Phytophthora parasitica P1569] >gi|567946065|gb|ETK71876.1| hypothetical protein L915_20944 [Phytophthora parasitica] >gi|567974723|gb|ETL25305.1| hypothetical protein L916_20826 [Phytophthora parasitica] >gi|568004200|gb|ETL78529.1| hypothetical protein L917_20676 [Phytophthora parasitica] >gi|568034106|gb|ETM31786.1| hypothetical protein L914_20693 [Phytophthora parasitica] >gi|568101359|gb|ETN16045.1| hypothetical protein PPTG_06276 [Phytophthora parasitica INRA-310] >gi|570936038|gb|ETP01295.1| hypothetical protein F441_21431 [Phytophthora parasitica CJ01A1] >gi|570966335|gb|ETP29454.1| hypothetical protein F442_21388 [Phytophthora parasitica P10297])

HSP 1 Score: 82.8037 bits (203), Expect = 2.384e-15
Identity = 75/204 (36.76%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   25 ITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFG 227
            + S K   P T  FG G+ PR     +H+G+ +PGPGAY + S++ G    S +      S+ GRE FGS    K  A    PGPG Y +        + NP+ RAAP +S  K  SP       PGPG Y    T+G  VLS++ S PVS+F K  ++   TS  T D+     GPG Y   V A G+Q  S   +     FG
Sbjct:   34 VDSRKATAPYT-VFGSGTRPR-----THNGSKSPGPGAYQIPSSI-GKPVLSTMAQAPSCSISGREKFGSTADLKTSAKF--PGPGDYSTH-------IVNPRERAAPSYSLGKKWSPMAGDKKFPGPGAYESSPTIGRTVLSTQKSNPVSSFPKVERKPLHTSS-TADV-----GPGQYGVVVEAVGRQAISTVSSAASFSFG 215          
BLAST of EWM21887.1 vs. NCBI_GenBank
Match: gi|695442682|ref|XP_009533515.1| (hypothetical protein PHYSODRAFT_347554 [Phytophthora sojae] >gi|348670949|gb|EGZ10770.1| hypothetical protein PHYSODRAFT_347554 [Phytophthora sojae])

HSP 1 Score: 81.6481 bits (200), Expect = 1.149e-14
Identity = 75/225 (33.33%), Postives = 110/225 (48.89%), Query Frame = 0
Query:    8 PLAMAKTSVNNMAEDKIITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKD-RACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRK---RQSFTSDLTPDLTSSGGGPGFYN-AVSACGKQVDSRKRNGGGVRFG 227
            P+  A T + +   +++  S K   P T  FG G+ PR T     +G+ +PGPGAY + S++   V  + +++    S+ GRE FGS   T D +     PGPG Y ++       + NP+ RAAP +S  K  SP       PGPG Y    T+G  VLS++ + P+S+F K  +   R S T+D+         GPG Y   V A G+Q  S   +     FG
Sbjct:   46 PVHQAFTDIKSSCGEQV-DSRKVTAPVT-VFGSGTRPRTT-----NGSKSPGPGAYQIPSSIGKPVLSTMVQAP-ACSISGREKFGS---TSDLKLSAKFPGPGDYTTA-------IVNPRERAAPSYSLGKKWSPMPGQKKFPGPGAYETTPTIGRTVLSTQKTNPMSSFPKVERKPLRTSSTADV---------GPGQYAVVVEAVGRQAVSTLTSAAAYSFG 243          
The following BLAST results are available for this feature:
BLAST of EWM21887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102231|gb|EWM21887.1|3.343e-173100.00flagellar associated protein [Nannochloropsis gadi... [more]
gi|676394599|ref|XP_009040577.1|1.650e-2538.83hypothetical protein AURANDRAFT_66990 [Aureococcus... [more]
gi|299117604|emb|CBN75446.1|1.450e-2436.68conserved unknown protein [Ectocarpus siliculosus][more]
gi|635363618|emb|CCI47866.1|1.378e-1537.62unnamed protein product [Albugo candida][more]
gi|325185193|emb|CCA19683.1|1.572e-1537.82conserved hypothetical protein [Albugo laibachii N... [more]
gi|970617821|gb|KUF65898.1|1.661e-1536.76Outer dense fiber protein 3 [Phytophthora nicotian... [more]
gi|301107694|ref|XP_002902929.1|1.765e-1533.63conserved hypothetical protein [Phytophthora infes... [more]
gi|570312258|gb|ETO60206.1|2.384e-1536.76hypothetical protein F444_21562 [Phytophthora para... [more]
gi|675179081|ref|XP_008898425.1|2.384e-1536.76hypothetical protein PPTG_06276 [Phytophthora para... [more]
gi|695442682|ref|XP_009533515.1|1.149e-1433.33hypothetical protein PHYSODRAFT_347554 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8821rna8821Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications