rna8820, rna8820 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8820
Unique Name	rna8820
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3174
Alignment location	KK037250.1:246901..248796 +

Link to JBrowse

Properties


Property Name	Value
Product	sam-dependent methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100159g12.6551.mrna
Orig protein id	gnl\|cribi\|Naga_100159g12.6551
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:246901..248796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g12	gene8551	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8820	rna8820-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21873.1	cds8790	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:246901..248796+
coding sequence from alignment at KK037250.1:246901..248796+

mRNA sequence

>rna8820 ID=rna8820|Name=rna8820|organism=Nannochloropsis gaditana|type=mRNA|length=3174bp
CCGTGCCTTTCAATGCTCTCATCACGTGTGAAACGCACAAGCAGATTGGC
GGCAGGGCCCTCAGAGAGGCGACGTAGGCCATGGCGGCACAGGGTCATGG
CCTTGCGGTGGCAATGCGCGTGCTCTGTTGGTGCCTGACGTTATCTTTCC
TCGTGCACGCCTTCACGCTTCAGCAACAGCCGAAACGACACCTCCATCCC
TTGTATGCAGGAGGAGGCGGGGACAAAGAACGAGTTGCCAAACTCCTACG
TTTGAAAAAAATTAAGGAGGGTGGAGGAGACTATAACCGCTTACTTGATG
GAGGGGTCTCCGGCAGCGAGGGAGGACAAGAGGACTACAGGTACTGGGAT
AACGATGCGAATGACGACGCCGCACTGCCCGACTCATCAGAGTACACCGC
CGAGGATCAGGAGATGTACAACGAGCTGAAGCGACAGGAAAAGCAAGCCT
TGCTCGATAAGATCCTCAAGTCAAAGGCCCAGTCTCAGACCCAGTCTTCG
TCCACCACATTAAGCACCTCTTCCGCCTCGCCCAACAAGGGACAGCCCTC
GCCGTACCTGGCTCGTAAGCTGCAGCAGCTCCAGGATGTTGAAAAGCGCT
TCCAGAATGTGGAAACATACAAGCCTCAAAGTACGTCCTGGGGCGAGTTT
GCGCGACCGAAGAACATTCCTGACGCCTTCGGGGGAGGCGTGCACATCCC
CGAGGGCGGTGTCACCCTGGAGGGGGACAAGGAATGGCTGGCAAAGTACG
ATACGCTGATGGCTCAGGTGCGGGAATACAAGAAGGGAGTCCAAGGCACG
GTCCTGACCCCCCTCGAAAAGGCGGACGAGGAGCGTATCAAGGTAGCGAG
GACGCAGGCGCGTAAGTACATGCTGCGAGGCGAATACGAGGCCGCCAAGG
CCGTGCTCCTCCCCTTCCGCAGCATCTGCTCGGTACGGAGCTCATTGGGC
GCATCCACGCTCATGGATTTAGCCATGGCGCATGAGGCAGTGTACGAGTT
CAAGGAGGCCCAAGACATCTACACGCAGGTCAGGAGCTCGCCCGTGAAGG
ACCTGCGGGCCAAGGCGAAAGCGCTCAACCTGGGTGCGGAGGCCATGAAG
AAGCTGGGGCTCGGCTCCAAAAGCAATGTAAACCCACGCAACATGATCAA
TTTCGCCTACATACCGGGGCAGATCGAAGGGAGCTACGGCCTCTATATGA
AGGGAAAGAGCAGCCCTAGTCCGGACGACTCCATGTCGGGGCTCCGCATC
GAATCAGTAGCTCAGGCCCTTGAGGTACTTGAAGACGCCGTAATAGCCCA
GGGTGTGGGCGTCCGCTTCGATGCAATAAATGCTGCTCTGCGAGTGGTGC
ACCAAGATGTCTTGCGCAGCGATTTTGCGTCGGAAGGTCCCTCTCGACGC
CTGGCCCCTGTCCCCGTCCAAGACCTAGATGGTCGGTGGCGGTGCCGCCT
CACTGCCCATCAAGAAAGCGTCGATTTCCTCACCAAGGTTGACGTCTGGC
AGCGGGTTGAGTCTGAGACTAGGACAATTACCGGAAAGCTAGTCGTGTCG
CCATTCGAAGTTGTACGGGACGTAAAAGTCGCATTTACATTCGACGGCAC
GGGGCGCGTGTTAAATTATGGGGTTGAGGGGTCCATGGCTAGTACATTGG
GGATTCCTACTGGACTGCCACACACATTACGGGTCCTCGCCATCACTGAC
ACCATGTTGGTAACTGCTAGATCGTCGGATGCGAAAGGTACGACTCCAAA
GGAGTCATACGAGGCGCGATTTGCGGTGTGGACACGGGCGGGATAAGCAG
TAGGGCTCCAATTAGTTTGTGTATATACCTGCATGTTGATGGCAGAAGCT
GTCATGCGTTAGTAATTTGATAGGTCCAATAAATTATGTATTGAGTGGCG
AGTAATAAACAATGAACCAGTGAAAGCCGAGTCATAAGCTTCCCGGTGGT
GGGGGGGAGGTTATGAGGAGGTTATCGAGGGATCGATATGGCCCGTTTCG
CGGCCTGCGCGCACCTAGCACATGCTTAAACTTCGTACATTGTGTCACTT
CTATGCCTGCCGACTGTCAGCTTTGTATTGAATCCTCGGTCATAGCACAC
ACCCCTGAAATCTGTCTTTGTTCCGGCGGCTACATTTTTTAGGGCCGGAA
CCGGTTACGCGCTCCGTCGTTGCTCCTCTCCCCCAGCCCGCACGATGATG
AACTCCGATGGCGCAAGCGAGGGTATGAAGAGTATGGATAGCAATATGCC
CATGCCGAGGTCGATGCCCATGTCCATGGATCTTACTCTCAAATGCACAT
GTCAAGTGGGCAAGCTTTTTATCGCAGCATGGGACATCGACACATGTTCG
GTTTACTATGCTAGCCTTGCCGCAATCTGCTTCTTCTGCTTCTTGCGGCA
TTTACTCACTATGCACAAGACTAGGCTGGTTTTGCGCTTGGCTGAGCAAA
ATACAGGTATACATCTCTTGCATTTTAGTGAGCGAATTCTACTTCCTCCA
TCTCCATGTCGTTGTTTCTCGTGCACAGGTCAGGCAAGTGACGGGACGAC
ATCCATGCTAGTAGGCTGCGCAGCGAGCAAGCCTGGTCCGACGTCGTCGA
CGTATGGATCAACCTCAAGAAGTGCAAGGGTGACAGACGAGGAGGAACAA
GAGCTCGTGGGGAAAAATGGGAGCTGTGTCGCCCGTGAGGCCTGCGTGTC
GGATGCGTGTAAGCCTTTGCGGCTGCTGCCCTCGGATGACGCGCTGGCCA
AGTTTGGGTCCACAATCAGCGTGCGGGATCGTATAGTGCTCACGTGCTAC
TTTGTGTTGTTGAGTACGTCGTCCTTGCTGGTGATGCTTCTGGCGATGAC
TTTCAATCTAGGCGTCATCGCTGCCATCCTGGTGGGGGAGGGGGCCGGCC
ACCTGGCCTTCGCGTCAGACGCCCTGCACAATCTCCTTCACGCGGGGAGT
TTTCATTAGCCATAACCCCGTGGATGAATGGGGTTAAATGTCAAATATAG
GGATGGGTTAAGAAAGGCCTGCGAATCAGGCAAAGTACATATAGCGAGGG
TAGTCATGTATGGACAGAAAGAGAACGAATGCAGCAAAGGCATCATTCCT
ATGTCAAGGCAAGTGAAATGGAAGGGATGCTTGATAACCAAATTAAAGCA
ATCCTTGGCAAGGCAATGATACCA

protein sequence of rna8820

>rna8820-protein ID=rna8820-protein|Name=rna8820|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MGWTGLLMPLKTAIAAFAFQKQASQSSTILQKLGPRLSAVYRLVPSHAKG
IVDVGCDHALLGLALAAGRDHPNLRKVIGIDKALDPLDVARQNLREHAYS
RIEKYPLTASLELRHGDGLEALIPEDVNLVDTLCMAGLGSGTIIEVLSSL
KYVREGAKFEYLVLQPFDSRPHYVNEVRDCVKSQGFSIQQERIDYVNSRW
FVTMAASVNANKADKAGQCEKVRYNSTCMLGDALMRLAREDRRTHQIYAD
YLCHHRDWYASICKARNTRMPPEHDYVSQFLRAIEQEISALRVH

mRNA from alignment at KK037250.1:246901..248796+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8820 ID=rna8820|Name=rna8820|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp|location=Sequence derived from alignment at KK037250.1:246901..248796+ (Nannochloropsis gaditana)
tccctccactcgcACCCTGGTGCtacttccttttttcccctagTGAATCT
CACGCAGCTTCATGGACTTAATCTCTCCTTTACTTTATTTGCTGCTTCAG
GGAAGAGTACATGGGATGGACGGGCCTACTGATGCCGTTGAAGACGGCAA
TCGCTGCTTTTGCTTTTCAAAAGCAAGCAAGTCAATCCTCAACAATTCTG
CAAAAATTGGGTCCTCGTTTGTCTGCCGTTTACCGCCTTGTACCTTCACA
TGCGAAGGGAATTGTAGATGTGGGGTGTGATCATGCACTGCTAGGGCTTG
CCTTGGCTGCGGGTCGAGATCATCCAAATTTGCGCAAAGTGATAGGTATC
GACAAAGCGCTAGACCCTCTAGACGTGGCAAGGCAAAATCTAAGAGAGCA
CGCGTACTCACGTATAGAAAAATATCCTCTGACAGCATCACTAGAGCTAC
GACATGGTGACGGTCTTGAGGCCTTGATTCCTGAAGATGTTAACCTTGTC
GATACACTATGTATGGCCGGGCTTGGCAGCGGCACAATTATAGAAGTGTT
GAGCTCACTAAAATATGTCAGGGAAGGGGCAAAGTTTGAATATCTTGTCT
TGCAACCCTTTGACTCACGACCGCATTATGTAAATGAAGTCCGTGATTGT
GTTAAGTCACAGGGATTTAGCATCCAGCAGGAGCGCATTGATTATGTCAA
TAGCCGCTGGTTCGTGACCATGGCCGCGAGTGTCAATGCCAACAAAGCAG
ACAAAGCTGGGCAATGTGAAAAAGTTAGATATAATAGCACATGCATGCTC
GGAGACGCATTGATGCGCCTTGCGCGGGAGGACCGGCGTACACACCAAAT
TTACGCTGACTACCTTTGCCATCATCGAGACTGGTATGCTAGCATTTGCA
AAGCGAGGAATACGAGGATGCCACCAGAACATGATTATGTGTCTCAGTTC
TTACGCGCTATAGAGCAGGAGATATCAGCATTACGTGTGCATTAGACAAG
AAATGTttggttagggttagggttaagAAGCGTGGTGTCCGAGGACAAAG
GGATAGTACTTTTAAAGTTTTCTGAATAGCGTTTTCTTAATTGTCAAGAC
ACTCTCTGATTGTATCATATTAAGTATATAGCTCTAGCTATTGTGACATA
CTAAAAATTCTTTCTTTTTACCGAAGTCGAAGGGCCTTCTGCCTTCCCAA
AGCGGACCCCCCCGCCATTTCGCTTCCTTGAATCGACCTGCTTACCGCAG
GCACTGACGGCATTGTAAAAACCAGGTCCCCCCCCACTTGACGTTAGGTC
TGGGGTTAAATCGCTTGTGAAGCTCTGCCGCTTTCGGCCTTTTCCGAACG
TAGAAACAGGTGGACTGGCCCTGCTGGACAGAACTTGTGGGCCTAACGTA
TCTTTGAAATGATAGTGGCCAGGACCTGGCTGTATACTCAATTTATTACG
TGGAGAACAGCCTTTTGGAAAGGAAAATTGTGGCGCGGCTCGATGTTTAG
GGTTACTCAGCAACCCTCCTTTCCGGCTTTGTGAGGAAAGGTACGCTCCG
GGACCTGGTTCATCGACGCACGCTCTATCCTTTGTGAAGATTTTACTCCC
AaatccctctcttccgcgCAGAGAAAAGCCATTCGTTGATCTGATCCTGG
AGTCAGCCACATGCCCTGACAGAGTTGACTTCAGATTGTAAGCGCCAGGT
CCTGGCGTGTCGTTACCCGAATGTGAAGGAGCAATGGTGTCACGTGGGGA
GGATCCAAAACCAAAAGATGGGGTCGCGGGAAATATTCCTTTGTATGAGG
TTATTATCTTGTCCTCCGCCATGTTGTTTACACTGGTCTTAGCCATGGCT
AGGGGTAGATGTGCATAAGCTGGCATTCGTTTTATTTTGATCGGAA

Coding sequence (CDS) from alignment at KK037250.1:246901..248796+

>rna8820 ID=rna8820|Name=rna8820|organism=Nannochloropsis gaditana|type=CDS|length=885bp|location=Sequence derived from alignment at KK037250.1:246901..248796+ (Nannochloropsis gaditana)
ATGGGATGGACGGGCCTACTGATGCCGTTGAAGACGGCAATCGCTGCTTT
TGCTTTTCAAAAGCAAGCAAGTCAATCCTCAACAATTCTGCAAAAATTGG
GTCCTCGTTTGTCTGCCGTTTACCGCCTTGTACCTTCACATGCGAAGGGA
ATTGTAGATGTGGGGTGTGATCATGCACTGCTAGGGCTTGCCTTGGCTGC
GGGTCGAGATCATCCAAATTTGCGCAAAGTGATAGGTATCGACAAAGCGC
TAGACCCTCTAGACGTGGCAAGGCAAAATCTAAGAGAGCACGCGTACTCA
CGTATAGAAAAATATCCTCTGACAGCATCACTAGAGCTACGACATGGTGA
CGGTCTTGAGGCCTTGATTCCTGAAGATGTTAACCTTGTCGATACACTAT
GTATGGCCGGGCTTGGCAGCGGCACAATTATAGAAGTGTTGAGCTCACTA
AAATATGTCAGGGAAGGGGCAAAGTTTGAATATCTTGTCTTGCAACCCTT
TGACTCACGACCGCATTATGTAAATGAAGTCCGTGATTGTGTTAAGTCAC
AGGGATTTAGCATCCAGCAGGAGCGCATTGATTATGTCAATAGCCGCTGG
TTCGTGACCATGGCCGCGAGTGTCAATGCCAACAAAGCAGACAAAGCTGG
GCAATGTGAAAAAGTTAGATATAATAGCACATGCATGCTCGGAGACGCAT
TGATGCGCCTTGCGCGGGAGGACCGGCGTACACACCAAATTTACGCTGAC
TACCTTTGCCATCATCGAGACTGGTATGCTAGCATTTGCAAAGCGAGGAA
TACGAGGATGCCACCAGAACATGATTATGTGTCTCAGTTCTTACGCGCTA
TAGAGCAGGAGATATCAGCATTACGTGTGCATTAG

Synonyms

Publications