rna882, rna882 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna882
Unique Name	rna882
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1923
Alignment location	CM002456.1:636150..638417 +

Link to JBrowse

Properties


Property Name	Value
Product	methionyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100017g76.348.mrna
Orig protein id	gnl\|cribi\|Naga_100017g76.348
Gene	MetRS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:636150..638417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MetRS	gene845	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna882	rna882-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29850.1	cds882	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:636150..638417+
coding sequence from alignment at CM002456.1:636150..638417+

mRNA sequence

>rna882 ID=rna882|Name=rna882|organism=Nannochloropsis gaditana|type=mRNA|length=1923bp
ATGGCCCGGACAGTTAAACGTTCGGACGATGAGGGTGATGGAAATGGTAG
CTACCTACGTAGTGGATCTCCACGCGCGCCGCCCCGGTTAAAGAAGCGGC
AGTCTTCTCACAAAAGGAATTCTGGCGTTGTGGGTGTATCGGGGGGCCGG
AGCGGGTGGTCTATGATATGGATGGTAGCCCTTGGCGGAATTCTTGGTCT
CTTGGTGTACTCATGGCGAACGCTTATTCCAAGAGCAAAGATAGTGGAGT
CACAACGAAGAATGCCTACTCCTGTGGTCTTAGAGCACCACTGCAAGGAG
CATATCGGGCCGCCTCGAGTGCTCCAAGTTACGGAGAACGTTTGGGTTGC
AGTAGGATTCGACCTGGCAAATACAATCCTCATCAAAACCAATGCAGGCC
ACGTGATTGTAGATGTAGCGATGAGCCCCCCAAGAGCACACGTCATCCGC
AAAGCCCTCATCGAGGCTGCAGGGGACGCGCCCATTCACACCATCATCTA
CACGCACTCCCATATCGATCACGTGGGAGGGGCCTCGGGCTGGGCAGGAA
ACGGAACCAGAATTTGGTCGACGGAGGCTGTAACCTCGCACTTTTTCAAG
CAGTACGGTGTTTTTCGCAAGACAGAGAGCTTGCGAGGCTCACGGCAGTA
CGGCACCCTGGTGGCAATGACAGAGCTGCCCTGCTCCGCCCTAGGGGCCC
GCGTGGATTTGGATGCCATGCGGGCAGAGGCAGGTTTTTTATTGCCGACG
GACACGTTTCGGGGGAACGCCTCGTTCTCGGTGGGGGGCGAGGATTTTGA
GCTGATCGAAGCCCATGGGGAGACCCACGATATGCTGGTGGTCTGGTTGC
CTCGACAGAAGGTCCTTCTCCCGGGGGACAACTACTACAGGGCTTTCCCC
AACCTGTACACAATCCGAGGAACTACCCCCCGCCCCGTCCGCGCCTGGAT
CCAGTCCCTCGACATGATGCGAAAGCTCAAGCCGGACTACCTGGTGCCTT
CTCACACGGAGCCTGTGGTCGGCCTGGAGGCAATCTCGAAGCAGCTCACA
GACTACAGGGACGGCATCCAGTGGGTGTACATGGAGACGATCCGAGGCGC
GAACGACGGCAAGAGCCTCGACGAACTCGCCCTGTCTGTGGGCTTGCCGC
CTCACCTCCGGGACAACGACGCCCTGGACGAGTTGTACGGGCAGATAGAT
TGGTCAGTCAAGGCCATCTATTCGGGGGAGCTGGGCTGGTTTGACGGGAA
TCCGGAGGAACTCTACCCCGTGGCGCACGACGAGGAGTCGGAGAAGACGG
TCTCCCTGATGGGCGGCGCCTCCAAGGTCTTTAAGGCCGTCGAGGACGCG
CAGGCCATGAACGATCACCGGTGGGCGCTTCGTCTTATTTCGCATCTCCG
AACCGTCCAGAAAAAGGACAAGTCTGTGTCGCGCAAAGTCCTGACAGCCT
TGGAGGCGGCGAGTCTGCGGGCCCTGGGGCAGACAATCTTCAACACCAAC
GGCCGCGCCTACCTGCTGCAATCTGCGCTCGAACGGGAGGGAAGTGGACC
TCGACAAGAGACGAAGCCAGTCCTCTCCGACGCCTTTATCGATTCGATTC
CCATTTCTCTCGTTTTCGAGGTGATGCAGACTAGGCTGCGGCCGGAGCTC
TCTATTGACGTCCACGAATCCGCCATTTTTCAAGTAGGCGAGGCCAAGTA
TATCGTTACAGTACGTAGGGGGGTGGCCGAGATTAGCAAGGGAGATGCAA
TATTCGGGACACCGGATCCAATCGGTACATTTATCGCGGATGAAAACATG
TTCCGACGCATCATGCTGCAACTCAAGTCTCCTGGAAAGGCAATAATGAA
CGGTGACGTCCGGATAAAGGGGGATCAACTCCGCTTTCTCACCTTCGTGC
AGCGCTTTGAACGGGGAGCCTAA

protein sequence of rna882

>rna882-protein ID=rna882-protein|Name=rna882|organism=Nannochloropsis gaditana|type=polypeptide|length=623bp
MHVRRRQQLGYPTSFWSFPSFFRVIVVVMYASSTSALRRKSAAFVFPGAR
GYIPRLRSHSSLLFNERRFFSTSVSAAATVKDSPGSNSKKTGYYVTTPIY
YVNDKPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAK
AGKSPQTFVDEVSQNFRSLAKIMEFTNDKFIRTTQADHKAAVQALWKQLE
AAGHIYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFK
LSAWQEPLLEFYAAHPNFIAPESRRNEVISFVKGGLKDLSISRTTFKWGV
PVPEDDDHVMYVWMDALTNYISALGYPEAKGSSPTPYQRFWPADLHVVGK
DILRFHAVYWPAFLMAAGLAPPRRIFAHGWWTKDRQKISKSLGNVIDPVR
LVEQFGLDPTRYFLMSEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRS
LAFIAKNCEGQVPEPTSALTEADVAMLRSARGLLETVRPLVRDEQALHRY
SEALNRVVNEGNRYFDEQAPWTLRKTDKDRMATVLYVTVEALRSVALLYQ
PLIPASASKLLDLLAVPSERRTFADVGADAALTPGTPLPKPEGVFPRVED
PDAPKDGAASPAKQKQHKKTKAP

mRNA from alignment at CM002456.1:636150..638417+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna882 ID=rna882|Name=rna882|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp|location=Sequence derived from alignment at CM002456.1:636150..638417+ (Nannochloropsis gaditana)
CTAAACGAGTTGCAAGGaaataacctccccacccccttgtTGCCGAACCG
CTCGCTTGCACAAAGAATAGGACGCCTGTTTCTATTTATGCGTACTCCAT
CCGTGGAGGAATGAACAAAAATGCGAGAGTTTAAGAGGTTTGATAGCATG
AAAATATGTTGGGGGGCAATGTTTGAGCTTTCGACGTACTTGGGGCAATG
CACGAAGTATCCAGCACGCTGacctatccctccctctgaaTCAGCACGGA
CACAGCAGTAGCAGGCGCGGGCATCCCTCACCCTTAGGTTCTGCCAAGAC
GACACACATGCATGTGAGAAGAAGACAGCAACTGGGTTACCCTACCTCTT
TCTGGTCGTTCCCGTCGTTCTTTCGCGTGATAGTGGTCGTCATGtacgct
tcctccacgagcGCACTGCGGAGGAAAAGTGCTGCATTTGTTTTTCCTGG
TGCCCGTGGCTACATCCCTCGCTTGCGATCACATTCTTCACTGCTTTTTA
ATGAGCGTCGATTCTTTTCGACTTCGGTCAGCGCGGCCGCTACTGTAAAA
GACTCACCTGGTTCCAACTCCAAGAAAACTGGATACTACGTCACGACGCC
TATCTACTATGTCAACGATAAGCCTCACATAGGGCATGCGTACACAACCC
TGGCTTGCGATGTGATTGCTCGATTTATGCGCTTGGACGGGCGTGACGTA
TTTTTCCTGACAGGCACAGATGAGCACGGGCAGAAAGTCGAACAATCAGC
AGCCAAGGCGGGCAAGTCTCCTCAGACATTTGTGGACGAAGTCTCCCAAA
ActtccgctccctcgccAAGATCATGGAATTCACCAATGACAAGTTCATT
CGCACCACCCAAGCTGACCACAAGGCGGCCGTACAAGCCTTGTGGAAACA
ACTGGAGGCCGCCGGTCACATCTATCTGGGCGCCTACGAGGGGTGGTACT
CGGTGAGGGACGAGGCCTATTACACGGAGAGCGAGTTGGTGGACGGCAAA
GCACCGACTGGTGCGGAGGTCGTGTGGGTGGTGAAGGAACCAAGCTACTT
CTTCAAGCTGTCCGCTTGGCAGGAGCCGCTTTTGGAGTTTTACGCGGCCC
ACCCCAACTTCATCGCCCCTGAGAGTCGGCGAAACGAGGTGATCAGCTTC
GTCAAGGGGGGGCTCAAAGACCTCTCTATCTCCCGCACCACGTTCAAATG
GGGCGTGCCCGTgccggaggacgacgatCACGTCATGTACGTGTGGATGG
ACGCGCTCACCAACTACATTTCCGCCCTAGGCTACCCGGAGGCCAAGGGA
AGCAGCCCCACGCCCTATCAGCGTTTCTGGCCTGCGGACCTGCACGTGGT
GGGCAAGGACATCCTACGCTTCCACGCCGTCTACTGGCCCGCCTTCCTCA
TGGCGGCCGGCCTggccccgccccggcgcATCTTCGCGCACGGGTGGTGG
ACCAAGGACCGGCAGAAGATCTCCAAGAGCTTGGGAAATGTGATCGACCC
CGTGCGCCTGGTTGAGCAGTTCGGGCTGGACCCGACGCGCTACTTCCTCA
TGAGCGAGGTGCCCTTCGGCAACGACGGGGACTTCTCGAACGACGCCTTC
GTCCGCCGCGTCAACAACCAGCTGGCGAACGAGCTGGGCAACCTCTTTCA
AAGGTCTCTGGCCTTCATCGCCAAGAACTGCGAGGGCCAAGTCCCGGAGC
CCACCAGCGCCTTGACAGAGGCGGACGTGGCCATGCTGCGCTCGGCACGG
GGCCTCCTGGAGACGGTGCGGCCTCTGGTCAGGGACGAGCAGGCCTTGCA
CCGGTATTCGGAGGCTCTGAATCGGGTCGTGAACGAGGGCAACCGGTACT
TCGACGAGCAGGCGCCCTGGACGCTGCGGAAGACGGACAAGGACCGCATG
GCCACGGTGCTGTACGTGACCGTCGAGGCTCTGCGCTCTGTTGCCTTGCT
CTACCAGCCGCtcatccctgcctccgcttccaaGCTCTTGGACCTCCTGG
CGGTGCCCTCGGAACGAAGGACGTTCGCAGACGTTGGTGCAGACGCGGCT
TTGACGCCTGGGACGCCCCTCCCGAAGCCCGAAGGCGTCTTCCCTCGGGT
CGAGGACCCTGACGCGCCCAAAGATGGCGCTGCATCTCCGGCGAAACAAA
AACAACATAAGAAGACAAAAGCACCATAAGAGGTcaagggggaaggtgca
TAGTGTGCAACAACAGCATTAACGTCAAAGAAAACTGCACGTTCAAGCCC
GCGTGAACCTGCCGGTCT

Coding sequence (CDS) from alignment at CM002456.1:636150..638417+

>rna882 ID=rna882|Name=rna882|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002456.1:636150..638417+ (Nannochloropsis gaditana)
ATGCATGTGAGAAGAAGACAGCAACTGGGTTACCCTACCTCTTTCTGGTC
GTTCCCGTCGTTCTTTCGCGTGATAGTGGTCGTCATGtacgcttcctcca
cgagcGCACTGCGGAGGAAAAGTGCTGCATTTGTTTTTCCTGGTGCCCGT
GGCTACATCCCTCGCTTGCGATCACATTCTTCACTGCTTTTTAATGAGCG
TCGATTCTTTTCGACTTCGGTCAGCGCGGCCGCTACTGTAAAAGACTCAC
CTGGTTCCAACTCCAAGAAAACTGGATACTACGTCACGACGCCTATCTAC
TATGTCAACGATAAGCCTCACATAGGGCATGCGTACACAACCCTGGCTTG
CGATGTGATTGCTCGATTTATGCGCTTGGACGGGCGTGACGTATTTTTCC
TGACAGGCACAGATGAGCACGGGCAGAAAGTCGAACAATCAGCAGCCAAG
GCGGGCAAGTCTCCTCAGACATTTGTGGACGAAGTCTCCCAAAActtccg
ctccctcgccAAGATCATGGAATTCACCAATGACAAGTTCATTCGCACCA
CCCAAGCTGACCACAAGGCGGCCGTACAAGCCTTGTGGAAACAACTGGAG
GCCGCCGGTCACATCTATCTGGGCGCCTACGAGGGGTGGTACTCGGTGAG
GGACGAGGCCTATTACACGGAGAGCGAGTTGGTGGACGGCAAAGCACCGA
CTGGTGCGGAGGTCGTGTGGGTGGTGAAGGAACCAAGCTACTTCTTCAAG
CTGTCCGCTTGGCAGGAGCCGCTTTTGGAGTTTTACGCGGCCCACCCCAA
CTTCATCGCCCCTGAGAGTCGGCGAAACGAGGTGATCAGCTTCGTCAAGG
GGGGGCTCAAAGACCTCTCTATCTCCCGCACCACGTTCAAATGGGGCGTG
CCCGTgccggaggacgacgatCACGTCATGTACGTGTGGATGGACGCGCT
CACCAACTACATTTCCGCCCTAGGCTACCCGGAGGCCAAGGGAAGCAGCC
CCACGCCCTATCAGCGTTTCTGGCCTGCGGACCTGCACGTGGTGGGCAAG
GACATCCTACGCTTCCACGCCGTCTACTGGCCCGCCTTCCTCATGGCGGC
CGGCCTggccccgccccggcgcATCTTCGCGCACGGGTGGTGGACCAAGG
ACCGGCAGAAGATCTCCAAGAGCTTGGGAAATGTGATCGACCCCGTGCGC
CTGGTTGAGCAGTTCGGGCTGGACCCGACGCGCTACTTCCTCATGAGCGA
GGTGCCCTTCGGCAACGACGGGGACTTCTCGAACGACGCCTTCGTCCGCC
GCGTCAACAACCAGCTGGCGAACGAGCTGGGCAACCTCTTTCAAAGGTCT
CTGGCCTTCATCGCCAAGAACTGCGAGGGCCAAGTCCCGGAGCCCACCAG
CGCCTTGACAGAGGCGGACGTGGCCATGCTGCGCTCGGCACGGGGCCTCC
TGGAGACGGTGCGGCCTCTGGTCAGGGACGAGCAGGCCTTGCACCGGTAT
TCGGAGGCTCTGAATCGGGTCGTGAACGAGGGCAACCGGTACTTCGACGA
GCAGGCGCCCTGGACGCTGCGGAAGACGGACAAGGACCGCATGGCCACGG
TGCTGTACGTGACCGTCGAGGCTCTGCGCTCTGTTGCCTTGCTCTACCAG
CCGCtcatccctgcctccgcttccaaGCTCTTGGACCTCCTGGCGGTGCC
CTCGGAACGAAGGACGTTCGCAGACGTTGGTGCAGACGCGGCTTTGACGC
CTGGGACGCCCCTCCCGAAGCCCGAAGGCGTCTTCCCTCGGGTCGAGGAC
CCTGACGCGCCCAAAGATGGCGCTGCATCTCCGGCGAAACAAAAACAACA
TAAGAAGACAAAAGCACCATAA

Synonyms

Publications