rna8813, rna8813 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8813
Unique Name	rna8813
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1313
Alignment location	KK037250.1:228518..230529 -

Link to JBrowse

Properties


Property Name	Value
Product	RNA helicase, DEAD-box type
Orig transcript id	gnl\|cribi\|Naga_100231g3.10120.mrna
Orig protein id	gnl\|cribi\|Naga_100231g3.10120
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:228518..230529 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100231g3	gene8544	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21889.1	cds8783	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8813	rna8813-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:228518..230529-
coding sequence from alignment at KK037250.1:228518..230529-

mRNA sequence

>rna8813 ID=rna8813|Name=rna8813|organism=Nannochloropsis gaditana|type=mRNA|length=1313bp
AGCCACGCGATCTGAATCGAGAGTGAACTGATATCAAATTGAAGAGGAGT
TGTGCGACCTGCAAGAAAAAGGAACGAACCAGGCGGAAGCGGTTGTCCTC
TGCAAGGGGACTAGGAAGAGAGAACGTCAAAATTGGGCGAGGCACTTGCC
CATCCATGTGACTCAGGGATGTACGTGCCTGCTTCCTTACATCCTTCCTT
AGAAGGTCACACAGCCATCCTGATGACAGTGCTTCGTCTCCATGTGCGAC
GAATTGCTACTCACCAACCTCCCCACTCGCGACGTGCATTCCTCTGTACC
TTTAAGGATCTCCAAGACGGGACCAAAGAGAAGTGTGGAACGGTACGTAT
ACACTAGCTACTCACCAACCTCCCCACTCGCGACGTGCATTCCTCTGTAT
CATTAACGATCTCCAAGACGGGACCAAAGAGAAGTCTGGAACGGCCTGGA
TAGATTGAGGCAAGTATGATCGAGGGGCTTCAAGCTATCGATCCCGAGTA
TGAGGAGCGGATGCTGGCATTCGAAATGGACTGCGACAAGGGCAAGGGCG
ATGCATGGGCTTGCCATTCTGTGGGAGAATTTTTAGCCGTTGTCAAGGGC
GACTACAACAAGGCGGCGAAGGTATACACAGACAATTGTGCAAAATACAG
TCACCCTCCCTCATGTTTTAATTTGGGACGCCTATATCTGGGCGGTCGCG
GGGTTCCTCAGAGCGACACGAGGTCGCTCAAGTGCTTTGACACTTCTTGT
AAAGCCGGGCACGGCATGGCCTGCCACCATATGGGGCTACTGCTCCTGTA
TGGGAAAGACGGCGGGTACGACGTTTCCAAGGACGTAAAGAAAGCGACGG
GTATCCTGAATAAGGCGTGCGGGGAGGGCATCCCTGATAGCTGCTACGCG
TTGGCCAGTCATCTGCTTCGGCACCTGCCGGAGGACAAGTCGCATGAACG
GGATGCTCTCAAGGCAAAGGGGTTATTGGAACAGGGTTGCGCGCGGGGAC
ATGGGCCCTCTTGTTTCAATTTGGCCGTCATGCACAAGAAGGGCGACACG
GGAATTCCTCGAAACGAGCAAGAGTTTGAGAAGTACAAAAAAGTAACGGA
GGACCTGGTGGAGCAAACGGGCGCGCTGACGTGGAAGAAAGGGCACTAGA
ATACCCATGGCGTGCATGGCATACACGAGCTGGAAGTCAACAATGCGTAC
AGGGGCATCTGCATTGTGCTTAGATGCCTAATATACCTAGGGTCGATGTT
GCTTTGATTCGCTTTTTATAAGAATGTACAGCGGGATTCAAACATGACCT
CCCAGGGCTCACA

protein sequence of rna8813

>rna8813-protein ID=rna8813-protein|Name=rna8813|organism=Nannochloropsis gaditana|type=polypeptide|length=613bp
MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTR
QWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPP
GKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEAL
GAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELG
LQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGA
SNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGG
IRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATA
TGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASI
PQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPA
ALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRG
ESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHV
IMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIE
VRRMGVMKRPRSR

mRNA from alignment at KK037250.1:228518..230529-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8813 ID=rna8813|Name=rna8813|organism=Nannochloropsis gaditana|type=mRNA|length=2012bp|location=Sequence derived from alignment at KK037250.1:228518..230529- (Nannochloropsis gaditana)
CGAAACCAACATCATCCCAATCTTTTCTTGGTCATATGGCACATATTTGA
TGCAGGGCAGCGTATGCCGATATCAAGCCGCAGGGGTTGCTAGGAGAAGG
TTCTTCGACCCTCCGTCACAAGCTTGGGTTGCTGCAACAGCGACATCCTG
CATGGCCCGCCATGACTGCGCTCCTAGCACTCGGACACGCAGCACCAGAC
AATGGCAACGTGAAACTCTCTTATTTTCAGTCACCCTTCTTTATGTCACG
GCTTCGGCCTCCTCGAGCCACACTCTTCGCCATGCTGCCTTCCTTTCCAG
CTTGCCCCCACGGCGACCGACAAGTCAGGTTCATGGTGCGCTGCCCCCGG
GAAAGGAAATGATGCATGTCGCGGAGAACGACGGGACGACCGCAGAGACG
TTCTCACAGCTTTACGGCGACCGTTTGCCATCATGGTTACTGGCGCGTGT
TGAGAGCCTGGGTTATACAAGGCCGACCGCCGTGCAGAAGGAAGCGTTGG
GCGCCATTCTTGAGGGTGAGGATGTGGTGGTGCATTCACAAACGGGCACC
GGCAAGACGCTGGCATTCATGTTGCCCCTTCTGGCGGGAATTGATGTCAA
CAAGAATGCGGTGCAGGCGCTCGTGGTGGTGCCGAGCAGGGAGTTGGGAC
TGCAGGTAGCGAGTGTCGCGAAACAATTGGCAAGTGGGCACATGTACTAC
CGCGGCGAAGACGGGCAAGAAGAGGGAAGGGACGCGGAAAACGAGGACCC
AGAAAGAAGGGAAGAAGGTGTCGGGAGCGAAAGTATGACGGCGGGCGCCA
GCAATGTCAGGGCCGCCAAGAAAATTCTGATCATGTCTCTCCTGGAGGGC
TCTAAAAACCGACGGCAAAAGGCTTGGGTGCTAGCGGAGCCTCCGCACGT
CGTGATCGGAAATCCCCGTTCCCTGGCACAACTGGTGGAGAGGGGGGGGA
TTCGCTACCACCAGGTGAAGATGGTGGTCGTGGACGAAGTGGACGCTTGC
CTGACCAGTCCCGAGACCGGCAGGGAGCTGCAGGGCCTGCTCGGTAAGTA
CCTCTCTCCCTCCTTCTTGACCGCAGAGCTCGAGGAGGAGGCCACCGCCA
CGGGCGGATCCAGCAAGGATGAGGAGGGTCCGCTCCTCCCACAAGGAGCC
ATGAAGGATGGCGGGGGCGAGAAGGGCGGGCGGGTGGCCCGGAAGCTTGC
CCCGTGGAAGCTCGTGCATCGGCAGACCCTCTTCGTCAGCGCCAGCATCC
CGCAGCACAAGCATTTCATCAAGCAGTGTGTCCAGCAGCAGTGGACTCTA
CGAGAACCGATGCACGTGCATGTCACGCCCGGGGAGCTGATGCCTCCAGG
TTTGCGGCACGGCTACCTCGTCGCCCCCACCAAGGCTGACAAGCCCGCCG
CACTCTTGGCTTTCCTGCGGCGGGAACGGGCCAAGGGCCGGCTGCAGGCT
TGCGTCATTTTCACGGCGGACGACCGGGAGGCAGAAAAGATGGCCGCGAT
CCTGGCGAGGAGCGGAGGGCTCGCGGCGGGAGGGCAAGAGCCCCGGGGAG
AGAGCAGTGTGGTGCAGGCCCTGGTGGGCGGGGAGCACATCGCGCGCCGG
GCCAAGGTAATGGACGCATTCCGAGCCGGGGAGAGCTGGGGACTGGTGAC
CACGGACTTCGCGGCGCGGGGTCTGGACGTGCCTCGCGTCAGCCATGTGA
TCATGCTCGACGTGGCTGGGGAGGCGGACACGTACTTGCACCGAGGGGGG
CGGGCGGGCCGGATGGGCAGGCCAGGCTGGGTCGTCTCGCTCGTCTCAGA
GACGGAGGCCTTCGCGCTTGTGCGCCTGGCGAACTCGCTGAAGATCGAAG
TGAGGCGGATGGGCGTGATGAAGAGGCCTCGATCAAGATAGGACGGAGGG
GGTTTCTGTGAGCCCTGGGAGGTCATGTTTGAATCCCGCTGTACATTCTT
ATAAAAAGCGAATCAAAGCAACATCGACCCTAGGTATATTAGGCATCTAA
GCACAATGCAGA

Coding sequence (CDS) from alignment at KK037250.1:228518..230529-

>rna8813 ID=rna8813|Name=rna8813|organism=Nannochloropsis gaditana|type=CDS|length=1842bp|location=Sequence derived from alignment at KK037250.1:228518..230529- (Nannochloropsis gaditana)
ATGCAGGGCAGCGTATGCCGATATCAAGCCGCAGGGGTTGCTAGGAGAAG
GTTCTTCGACCCTCCGTCACAAGCTTGGGTTGCTGCAACAGCGACATCCT
GCATGGCCCGCCATGACTGCGCTCCTAGCACTCGGACACGCAGCACCAGA
CAATGGCAACGTGAAACTCTCTTATTTTCAGTCACCCTTCTTTATGTCAC
GGCTTCGGCCTCCTCGAGCCACACTCTTCGCCATGCTGCCTTCCTTTCCA
GCTTGCCCCCACGGCGACCGACAAGTCAGGTTCATGGTGCGCTGCCCCCG
GGAAAGGAAATGATGCATGTCGCGGAGAACGACGGGACGACCGCAGAGAC
GTTCTCACAGCTTTACGGCGACCGTTTGCCATCATGGTTACTGGCGCGTG
TTGAGAGCCTGGGTTATACAAGGCCGACCGCCGTGCAGAAGGAAGCGTTG
GGCGCCATTCTTGAGGGTGAGGATGTGGTGGTGCATTCACAAACGGGCAC
CGGCAAGACGCTGGCATTCATGTTGCCCCTTCTGGCGGGAATTGATGTCA
ACAAGAATGCGGTGCAGGCGCTCGTGGTGGTGCCGAGCAGGGAGTTGGGA
CTGCAGGTAGCGAGTGTCGCGAAACAATTGGCAAGTGGGCACATGTACTA
CCGCGGCGAAGACGGGCAAGAAGAGGGAAGGGACGCGGAAAACGAGGACC
CAGAAAGAAGGGAAGAAGGTGTCGGGAGCGAAAGTATGACGGCGGGCGCC
AGCAATGTCAGGGCCGCCAAGAAAATTCTGATCATGTCTCTCCTGGAGGG
CTCTAAAAACCGACGGCAAAAGGCTTGGGTGCTAGCGGAGCCTCCGCACG
TCGTGATCGGAAATCCCCGTTCCCTGGCACAACTGGTGGAGAGGGGGGGG
ATTCGCTACCACCAGGTGAAGATGGTGGTCGTGGACGAAGTGGACGCTTG
CCTGACCAGTCCCGAGACCGGCAGGGAGCTGCAGGGCCTGCTCGGTAAGT
ACCTCTCTCCCTCCTTCTTGACCGCAGAGCTCGAGGAGGAGGCCACCGCC
ACGGGCGGATCCAGCAAGGATGAGGAGGGTCCGCTCCTCCCACAAGGAGC
CATGAAGGATGGCGGGGGCGAGAAGGGCGGGCGGGTGGCCCGGAAGCTTG
CCCCGTGGAAGCTCGTGCATCGGCAGACCCTCTTCGTCAGCGCCAGCATC
CCGCAGCACAAGCATTTCATCAAGCAGTGTGTCCAGCAGCAGTGGACTCT
ACGAGAACCGATGCACGTGCATGTCACGCCCGGGGAGCTGATGCCTCCAG
GTTTGCGGCACGGCTACCTCGTCGCCCCCACCAAGGCTGACAAGCCCGCC
GCACTCTTGGCTTTCCTGCGGCGGGAACGGGCCAAGGGCCGGCTGCAGGC
TTGCGTCATTTTCACGGCGGACGACCGGGAGGCAGAAAAGATGGCCGCGA
TCCTGGCGAGGAGCGGAGGGCTCGCGGCGGGAGGGCAAGAGCCCCGGGGA
GAGAGCAGTGTGGTGCAGGCCCTGGTGGGCGGGGAGCACATCGCGCGCCG
GGCCAAGGTAATGGACGCATTCCGAGCCGGGGAGAGCTGGGGACTGGTGA
CCACGGACTTCGCGGCGCGGGGTCTGGACGTGCCTCGCGTCAGCCATGTG
ATCATGCTCGACGTGGCTGGGGAGGCGGACACGTACTTGCACCGAGGGGG
GCGGGCGGGCCGGATGGGCAGGCCAGGCTGGGTCGTCTCGCTCGTCTCAG
AGACGGAGGCCTTCGCGCTTGTGCGCCTGGCGAACTCGCTGAAGATCGAA
GTGAGGCGGATGGGCGTGATGAAGAGGCCTCGATCAAGATAG

Synonyms

Publications