EWM21889.1, cds8783 (CDS) Nannochloropsis gaditana

Overview
NameEWM21889.1
Unique Namecds8783
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:228639..230480 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21889.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100231g3.10120.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:228639..230480 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|585102234|gb|EWM21889.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 1247.65 bits (3227), Expect = 0.000e+0
Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query:    1 MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613
            MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR
Sbjct:    1 MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|219112265|ref|XP_002177884.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410769|gb|EEC50698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 336.265 bits (861), Expect = 9.900e-104
Identity = 209/544 (38.42%), Postives = 299/544 (54.96%), Query Frame = 0
Query:  101 GKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAIL-EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDAC-------LTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQ---ACVIFTADDREAEKMAAILARS--GGL----AAGGQEPRGESSVVQALVGGEHIARRAKVMDAFR---------AGESWG--------------LVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVR 602
            G ++  +  +   +AE+F   Y   LPSWL+ +    G+T P+ +Q++AL AIL E  D VV ++TG+GKTLA++LP LA ID ++ AVQAL+VVP+RELGLQVA VAK+LA+                 +N++           ++  G        +I++MS+L+GS+NRRQ+AW  AEPPH+VIG P+ L  +V+ GGI RY+ VK +VVDEVDAC       LTS      L  LL KYLSP++             GS+ + +  +L           K     R L+      RQT+F SA+IPQH+HF+KQC Q QWTLREP HV + PGE L+P  L H Y V  +   K A L   + +  AK  ++     ++F+   R  E+MA ILA    GG+      G ++ R   +VV  L   + +++RA  +D+FR         A +++               L +TD AARGLD+  +SHVI  D+  +ADTY+HR GR GR GR G V+ ++S  + F L RL N L ++ +
Sbjct:  117 GPDVEEILSDGSLSAESFESRYAAVLPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGSRAAVQALIVVPTRELGLQVARVAKRLAAA--------------STQNDN----------VTLNGG--------RIMVMSVLQGSQNRRQRAWAWAEPPHLVIGTPQELCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTY-----------DDGSANEADDNVLRSVKTS----TKTATSTRPLSS----QRQTIFASATIPQHRHFLKQCAQNQWTLREPTHVCLRPGEQLLPATLEHSYAVCRSTDQKLATLRRLVTKIYAKSVIEPPKKVLVFSDARRPLEEMAQILANDIEGGMLWKDGYGKEQERDVRAVVAVLRYEDSLSQRAAAIDSFRGDGYTMASGASQTYTSRDNDSDTAPSLRVLFSTDLAARGLDIADISHVIHFDLPPDADTYVHRAGRTGRFGRSGQVLCIISPDQEFVLTRLTNKLNVDTK 609          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1210512269|dbj|GAX28710.1| (hypothetical protein FisN_33Hh012 [Fistulifera solaris])

HSP 1 Score: 331.257 bits (848), Expect = 1.770e-103
Identity = 209/528 (39.58%), Postives = 288/528 (54.55%), Query Frame = 0
Query:  107 VAENDGTTAETFSQL--YGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE--DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACLTSPETGRELQG-----LLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVH-RQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGES-----------SVVQALVGGEHIARRAKVMDAFRAGESWG--LVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKR 609
            + E+DG   ET + L  Y ++LPSWLL R + LGY  PT +Q  AL  +L+    DVV+ ++TG+GKTL ++LP LA ID  ++ VQA++VVP+RELGLQVA V K+L +                     PE                      K+L+MS+L+GS+NRRQ+AW  AEPP VVIG P  L+++V+ GGI RY+ ++MVVVDEVDACL +     +L       LL K LS +FL               KDE         ++D  G      A  L P + +H RQT+  SA+IPQHKHFIKQCVQ +WT  EP+ V +  GE L+PP L H Y+V   +  K AAL  F R+  +       ++F  + R  E+MA  LA         QE   ++           ++   L   +++ +RA  M+AF   +     L +TD AARGLDV  V+HVI  D+  +ADTY+HR GR GR+GR G V+SLV+  + F L RLAN L +E+R +   K+
Sbjct:   26 IYESDGALDETHTLLQRYQNKLPSWLLQRCQDLGYIHPTRIQTAALDVVLQENKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAIIVVPTRELGLQVAKVTKRLVAA-------------------SPE----------------------KMLVMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFL--------------DKDE---------VEDTIG------AMSLTPKRRLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPMPFKVLVFAEEQRPLEEMALALALEAEHGVYWQESTAKALQDNPTDKPIQAITAVLRYQDNLTQRAAAMEAFTGSDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSLVAPEQEFVLNRLANKLSLELRCVARQKK 482          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|224002507|ref|XP_002290925.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972701|gb|EED91032.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 328.176 bits (840), Expect = 1.093e-101
Identity = 208/538 (38.66%), Postives = 294/538 (54.65%), Query Frame = 0
Query:  136 SLGYTRPTAVQKEALGAIL-----------------EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESM----TAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLT---------SPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGR---VARKLAPWKLV---HRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQ----ACVIFTADDREAEKMAAILAR--SGGLAAGGQEP---RGESSVVQALVGGEHIARRAKVMDAFRA---------------GESWG---------LVTTDFAARGLDVPRVSHVIMLDV--AGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVR 602
            +LGY  PT +Q   L  +L                 +  DV++H+QTG+GKTLA++LPLL+ ID +++AVQALVVVP+RELGLQV  VA++L  G     G           N+D    +EG   E +    T  +S    +KKI+IM LL+GS N RQ+AW  AEPPH+VIG P  L+ +V RGG+R + VK+VVVDEVDACL+            +   L  LL ++LSP++   E+   AT+  GS    +G         D G    G     +  +  +K+    +RQT+F SA+IPQH HF+KQCV+  WTLREP+ V+V+PGEL+PP L+H Y+V   K  K   L  ++++E A           +IF+   R  E +A +LA+  +G +   G  P    G  +V+  L   + +  RA  M+ FR                G   G         L++TD AARGLD+  +SHVI  D+    + DTY+HRGGRAGR+G+ G V+SL++  + F L RLAN L +E+R
Sbjct:    3 NLGYVNPTLLQSRVLDILLPTLDTSTSTNESSEQQNQPSDVIIHAQTGSGKTLAYLLPLLSRIDPSRSAVQALVVVPTRELGLQVVRVARRLCGGGRVDVG---------VTNDDDNETDEGGNDEGVLDDNTDESSTPSKSKKIMIMPLLQGSSNTRQRAWAWAEPPHIVIGTPEELSSMVTRGGVRVNSVKIVVVDEVDACLSRGGNGGMSDGGSSSGTLHELLSRHLSPTY--QEVGRVATSVEGS----DGRTFQMSTSSDSGETSVGNHDLSSHTMNGFKVYADKYRQTIFASATIPQHNHFMKQCVRNGWTLREPIRVNVSPGELVPPTLKHVYVVCRDKGTKVGGLRRWMKKEIAAADDNNGGTKMLIFSDPRRPLETLADMLAKDFNGIVWREGYTPMQENGYDAVISVLRMEDSLGTRAAAMEGFRGPNERDNGAVGGYANQGSDIGKEKRDKLRILLSTDLAARGLDISGISHVINFDLPNDNDGDTYVHRGGRAGRLGKKGQVMSLITADQEFVLERLANRLALELR 525          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1210517958|dbj|GAX23124.1| (hypothetical protein FisN_33Lh012 [Fistulifera solaris])

HSP 1 Score: 321.627 bits (823), Expect = 2.400e-99
Identity = 205/533 (38.46%), Postives = 284/533 (53.28%), Query Frame = 0
Query:  107 VAENDGTT--AETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE---DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACLTSPETGRELQG-----LLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGES-----------SVVQALVGGEHIARRAKVMDAFRAGES---WGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613
            + ++DG     +T  Q Y  +LPSWLL R + LGY  PT +Q  AL  +L  E   DVV+ ++TG+GKTL ++LP LA ID  ++ VQA++VVP+RELGLQVA VAK+L +                                          +  KI IMS+L+GS+NRRQ+AW  AEPP VVIG P  L+++V+ GGI RY+ ++MVVVDEVDACL +     +L       LL K LS +FL               KDE         ++D  G       ++    +L  RQT+  SA+IPQHKHFIKQCVQ +WT  EP+ V +  GE L+PP L H Y+V   +  K AAL  F R+  +       ++F  + R  E+MA  LA         QE   ++           ++   L   +++ +RA  MDAF   +      L +TD AARGLDV  V+HVI  D+  +ADTY+HR GR GR+GR G V+S V+  + F L RLAN L +++R +   K+  S+
Sbjct:   47 IYQSDGALDQTDTLLQRYQYQLPSWLLQRCQDLGYIHPTRIQIAALDVLLLDEHKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAILVVPTRELGLQVAKVAKRLVAA-----------------------------------------SPHKIYIMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFL--------------DKDE---------VEDTMGALSSTRPKR----RLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPVPFKVLVFAEEQRPLEEMALALAWEAEHGVYWQESTAKAVQDNPTDKPIQAITAVLRYQDNLTQRAAAMDAFTRSDDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSFVAPEQEFVLNRLANKLSLDLRCVARQKKATSK 510          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|299117280|emb|CBN75240.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 311.997 bits (798), Expect = 3.122e-96
Identity = 218/527 (41.37%), Postives = 291/527 (55.22%), Query Frame = 0
Query:  115 AETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAIL--EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPW--KLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARS-----------------------GGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGV---MKRPR 611
            A TF +L+  RLP WLL R+E LG+  PT VQ++AL  IL  E  D V+H+QTG+GKTLAF+LPLL  +D ++ AVQ LVVVP+RELGLQVA VAK+LA+         G   GRD+                            KI +MS+LEGS N+RQ+AW  A+PPH+VIGNP SL +LV  G +R + V  VVVDEVDACL S  T   L  LL + LSP+         A    G  ++    L   GA         GRV    AP   KL  RQT+F SA++PQH HFI+QCVQ+QWTL EP+HV V   E MPP L H Y+V P     P   LA LR +  +G     ++F    +  E +AA L ++                          A G  E   +  + + L     +  RA  M  FR G++  LV+TD AARGLDVP ++HV  LD+  + + Y+HRGGRAGR+GRPG V+SLV+  + F + RL N + ++++++ +    +RP+
Sbjct:    3 ARTFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFLLPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAA---------GTSSGRDS----------------------------KIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPT--------HADEDEGEDEEGAARLAEVGA---------GRVTGAAAPVNRKLRDRQTVFASATVPQHNHFIRQCVQKQWTLTEPVHVQVHAKEAMPPCLSHYYVVCP-----PEKKLAVLRTD-TRG-----LVFALATKPLEGIAASLDKALGGRGSGGGGGGERGGREQQQQQQQQAKGWDEQPPQPPLAEFLRQELGLNARADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRRPK 464          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1072237817|gb|OEU22544.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 283.878 bits (725), Expect = 6.395e-85
Identity = 183/523 (34.99%), Postives = 266/523 (50.86%), Query Frame = 0
Query:  111 DGTTAE-TFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE--DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACL--TSPETG------------RELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARS--GGLAAGGQEPRGE----SSVVQALVGGEHIARRAKVMDAF-RAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMK 608
            D T ++ +FS+LY D LP WLL + E   Y  PT +Q+ +L    + +   +V+ +QTG+GKTL ++LPLL+ ++ ++ +VQA++VVP+RELGLQVA VAK+L                                              +K ++MSLLEGS  +RQ+ W  AE P VVIG P  L  +V  GG+ R   V  VVVDEVDACL  TS   G              L  LL K+LSP+F+  +   +      +                         + K    K  HRQT+F SA+IPQH+HF+KQC   QWTL EP++V  +PGE +PP L H Y+V  +   K A L   +++             +   R  + +   LA S   G+    ++   E    + VV  L   + +++RA    AF    E   + TTD AARGLD+  V+H+I  D+  +ADTYLHR GRAGR+G+ G V+S+++  + F L RL+N+L ++V+ +G  K
Sbjct:   60 DATLSDKSFSELYSDNLPEWLLEKCEEYNYKCPTLIQQRSLDCFFDDDPNSMVIQAQTGSGKTLTYLLPLLSKLE-DRASVQAMIVVPTRELGLQVAMVAKRLV--------------------------------------------GRKFMVMSLLEGSSLKRQRKWAWAETPQVVIGTPTELLDMVRYGGLPRISSVNTVVVDEVDACLVHTSSLQGGSNNSVDTKALASSLNELLSKFLSPTFIDEDDIIDDEVITIADD-----------------------SNKKRKRKFRHRQTIFCSATIPQHRHFLKQCKANQWTLEEPVYVCTSPGEHLPPTLDHAYMVCNSNEKKMATLRNIIKKLNTSSNKILVFFDSTSSRPLDIIGKKLALSIDNGIFYEDKKTNLEDIQSNPVVSILRFEDSLSQRAGATKAFAERSEFRIMATTDLAARGLDILGVTHIIHFDLPIDADTYLHRSGRAGRLGQKGSVISILNPDQEFVLKRLSNALSVDVKCVGRQK 514          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|971510947|dbj|GAQ87246.1| (ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidium nitens])

HSP 1 Score: 268.855 bits (686), Expect = 6.684e-79
Identity = 172/488 (35.25%), Postives = 252/488 (51.64%), Query Frame = 0
Query:  118 FSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEH--IARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGR---MGRPGWVVSLVSETEAFALVRLANSLKIE 600
             ++L G  +P WL+ R E LGY  PT  Q EAL   L+G D V+H+QTG+GKTL ++LP+L+GID  +++VQA+VVVP+RELG+QVA VA+QLA      +G+D   +            EE   ++ + +G        KI +M+LL+G+   RQK W+ A+PPH+V+G P  + +++E   +R + +K +VVDE DA   +  T     G L K L+       ++ EA A                                        RQT+F SA++PQH   + + V+ +W   + +HVHV P + +P  L H YLV     DK  +L   + R++      A +IF  D  E  K          +A    E  G+   +Q L+  E+  + +RA ++  FR G    LV TD AARGLD+P VSHV   D+  +A +Y+HR GR  R    G  G V  LVS  E FAL RL N++++E
Sbjct:  122 LARLCGRSVPDWLIRRAEDLGYGTPTGAQTEALPLALQGRDCVIHAQTGSGKTLTYLLPVLSGIDPKRSSVQAIVVVPTRELGIQVARVARQLAG-----KGKDQVAD------------EEAANTKKLKSG--------KIQVMALLDGAGGNRQKIWLKADPPHLVVGTPDRIHKMIEYRNLRTNGLKFIVVDEFDAYPAATRT----TGSLNKLLT-------VDSEAGA----------------------------------------RQTIFASATVPQHNRAVTELVKNKWARNDLVHVHVDPIQHVPKFLDHRYLVCEGD-DKIKSLQKLVERDQPS----AAIIFAHDLTERNKRTGETPSVEAVAEALSE--GQPEALQPLLLQENARVQKRASIVQEFREGNRRLLVATDLAARGLDLPEVSHVYNFDLPLDATSYVHRAGRTARKPIAGTKGTVTCLVSSKEVFALKRLLNAIRVE 526          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|168052082|ref|XP_001778480.1| (predicted protein [Physcomitrella patens] >gi|162670078|gb|EDQ56653.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 261.922 bits (668), Expect = 1.097e-77
Identity = 167/496 (33.67%), Postives = 249/496 (50.20%), Query Frame = 0
Query:  118 FSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLA--AGGQEPRGESSVVQALVGGE--HIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRM---GRPGWVVSLVSETEAFALVRLANSLKIEVRRMGV 606
             S+L  +++P ++L + E +GY+ PT VQ+EAL  +L G D ++H+QTG+GKTLA++LP+ A I   + AVQA+VVVP+RELG+QVA VA++LA       G+ G EE   A       +E+G                  +++M+LLEG  N RQKAW+ AEPP +V+G    +A+++E   +R + V  +V+DEVDA + + + G  L  LL +Y  P                                                     RQT+  SA+IPQH+ F+  C+Q +W   + MH+HV P + MP  L H Y+V   K D+  ALL+ L+ +  +    A +IF  D  E  K A     +  +A      +   + ++ + LV  E  H+  RA  +  FR G    LV T+ AARGLD+P VSHV   +      +Y+HR GR GR       G V S ++  E F L RL N + ++   + V
Sbjct:    4 LSKLCMNKVPEYVLRKAEEVGYSVPTLVQQEALPVLLSGRDCILHAQTGSGKTLAYLLPIFAKILPARAAVQAIVVVPTRELGMQVAKVARKLA-------GKGGSEEDGKAP------KEKGT-----------------VMVMTLLEGGTNSRQKAWLKAEPPQIVVGTLERIARMIETKNLRTNAVNTIVIDEVDAMMGAAKEGGHLHKLLSEYTRPQ---------------------------------------------------QRQTILASATIPQHRRFLNDCIQNKWVKEDVMHIHVRPEDKMPSYLHHRYVVC-EKDDRLPALLSLLQSDAPR----AAIIFVNDQSEKAKRAGNTPTTITVADYIAKMKFSSDDALWEPLVLEEESHVNARAATLADFRDGRCL-LVATELAARGLDLPEVSHVYNFEWPPSVTSYIHRAGRTGRQPITEELGTVTSFITPKELFVLRRLENEMMLKFEALKV 412          
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1111026073|ref|XP_019264117.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Nicotiana attenuata] >gi|1102290368|gb|OIT36665.1| dead-box atp-dependent rna helicase 58, chloroplastic [Nicotiana attenuata])

HSP 1 Score: 244.973 bits (624), Expect = 1.285e-70
Identity = 162/497 (32.60%), Postives = 236/497 (47.48%), Query Frame = 0
Query:  111 DGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRM---GRPGWVVSLVSETEAFALVRLANSLKIEVRRM 604
            D +TA T  +L    +P  ++ RVE +GY  PT VQ +AL  +  G D V+H+QTG+GKTLA++L +L+ ID  ++AVQAL+VVP+RELG+QV  VA+ LA+                     P   E G                K   +M+LL+G    R K+W+ AEPP +V+    SL Q++E+  ++    +++VVDEVD    S +    L+ LL  Y                   SSK+                                 RQT+F SASIPQH+ F+  CVQQ+WT  + +HVHV   E MP  L H ++V  TK +K   LL+ L+ +      ++ +IF ++  E  K A        L        G  S V  L    +  +RA  +   R G  + LV TD AARG+D+P  +H+   D+  +A  YLHR GR GR     +  +V S+++  E F L R  N L     ++
Sbjct:   60 DSSTA-TLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSGKTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAA--------------------KPSELESG---------------PKSCTVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHVLKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSY------------------SSSKN---------------------------------RQTIFASASIPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVC-TKREKNQVLLSLLQVDSP----ESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSELRGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELMFRCEQL 464          
The following BLAST results are available for this feature:
BLAST of EWM21889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102234|gb|EWM21889.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|219112265|ref|XP_002177884.1|9.900e-10438.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210512269|dbj|GAX28710.1|1.770e-10339.58hypothetical protein FisN_33Hh012 [Fistulifera sol... [more]
gi|224002507|ref|XP_002290925.1|1.093e-10138.66predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210517958|dbj|GAX23124.1|2.400e-9938.46hypothetical protein FisN_33Lh012 [Fistulifera sol... [more]
gi|299117280|emb|CBN75240.1|3.122e-9641.37DEAD box helicase [Ectocarpus siliculosus][more]
gi|1072237817|gb|OEU22544.1|6.395e-8534.99P-loop containing nucleoside triphosphate hydrolas... [more]
gi|971510947|dbj|GAQ87246.1|6.684e-7935.25ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidiu... [more]
gi|168052082|ref|XP_001778480.1|1.097e-7733.67predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1111026073|ref|XP_019264117.1|1.285e-7032.60PREDICTED: DEAD-box ATP-dependent RNA helicase 58,... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8813rna8813Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications