EWM21889.1, cds8783 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|585102234|gb|EWM21889.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 1247.65 bits (3227), Expect = 0.000e+0 Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query: 1 MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613
MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR
Sbjct: 1 MQGSVCRYQAAGVARRRFFDPPSQAWVAATATSCMARHDCAPSTRTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSLPPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|219112265|ref|XP_002177884.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410769|gb|EEC50698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 336.265 bits (861), Expect = 9.900e-104 Identity = 209/544 (38.42%), Postives = 299/544 (54.96%), Query Frame = 0
Query: 101 GKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAIL-EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDAC-------LTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQ---ACVIFTADDREAEKMAAILARS--GGL----AAGGQEPRGESSVVQALVGGEHIARRAKVMDAFR---------AGESWG--------------LVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVR 602
G ++ + + +AE+F Y LPSWL+ + G+T P+ +Q++AL AIL E D VV ++TG+GKTLA++LP LA ID ++ AVQAL+VVP+RELGLQVA VAK+LA+ +N++ ++ G +I++MS+L+GS+NRRQ+AW AEPPH+VIG P+ L +V+ GGI RY+ VK +VVDEVDAC LTS L LL KYLSP++ GS+ + + +L K R L+ RQT+F SA+IPQH+HF+KQC Q QWTLREP HV + PGE L+P L H Y V + K A L + + AK ++ ++F+ R E+MA ILA GG+ G ++ R +VV L + +++RA +D+FR A +++ L +TD AARGLD+ +SHVI D+ +ADTY+HR GR GR GR G V+ ++S + F L RL N L ++ +
Sbjct: 117 GPDVEEILSDGSLSAESFESRYAAVLPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGSRAAVQALIVVPTRELGLQVARVAKRLAAA--------------STQNDN----------VTLNGG--------RIMVMSVLQGSQNRRQRAWAWAEPPHLVIGTPQELCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTY-----------DDGSANEADDNVLRSVKTS----TKTATSTRPLSS----QRQTIFASATIPQHRHFLKQCAQNQWTLREPTHVCLRPGEQLLPATLEHSYAVCRSTDQKLATLRRLVTKIYAKSVIEPPKKVLVFSDARRPLEEMAQILANDIEGGMLWKDGYGKEQERDVRAVVAVLRYEDSLSQRAAAIDSFRGDGYTMASGASQTYTSRDNDSDTAPSLRVLFSTDLAARGLDIADISHVIHFDLPPDADTYVHRAGRTGRFGRSGQVLCIISPDQEFVLTRLTNKLNVDTK 609
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1210512269|dbj|GAX28710.1| (hypothetical protein FisN_33Hh012 [Fistulifera solaris]) HSP 1 Score: 331.257 bits (848), Expect = 1.770e-103 Identity = 209/528 (39.58%), Postives = 288/528 (54.55%), Query Frame = 0
Query: 107 VAENDGTTAETFSQL--YGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE--DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACLTSPETGRELQG-----LLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVH-RQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGES-----------SVVQALVGGEHIARRAKVMDAFRAGESWG--LVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKR 609
+ E+DG ET + L Y ++LPSWLL R + LGY PT +Q AL +L+ DVV+ ++TG+GKTL ++LP LA ID ++ VQA++VVP+RELGLQVA V K+L + PE K+L+MS+L+GS+NRRQ+AW AEPP VVIG P L+++V+ GGI RY+ ++MVVVDEVDACL + +L LL K LS +FL KDE ++D G A L P + +H RQT+ SA+IPQHKHFIKQCVQ +WT EP+ V + GE L+PP L H Y+V + K AAL F R+ + ++F + R E+MA LA QE ++ ++ L +++ +RA M+AF + L +TD AARGLDV V+HVI D+ +ADTY+HR GR GR+GR G V+SLV+ + F L RLAN L +E+R + K+
Sbjct: 26 IYESDGALDETHTLLQRYQNKLPSWLLQRCQDLGYIHPTRIQTAALDVVLQENKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAIIVVPTRELGLQVAKVTKRLVAA-------------------SPE----------------------KMLVMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFL--------------DKDE---------VEDTIG------AMSLTPKRRLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPMPFKVLVFAEEQRPLEEMALALALEAEHGVYWQESTAKALQDNPTDKPIQAITAVLRYQDNLTQRAAAMEAFTGSDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSLVAPEQEFVLNRLANKLSLELRCVARQKK 482
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|224002507|ref|XP_002290925.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972701|gb|EED91032.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 328.176 bits (840), Expect = 1.093e-101 Identity = 208/538 (38.66%), Postives = 294/538 (54.65%), Query Frame = 0
Query: 136 SLGYTRPTAVQKEALGAIL-----------------EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESM----TAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLT---------SPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGR---VARKLAPWKLV---HRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQ----ACVIFTADDREAEKMAAILAR--SGGLAAGGQEP---RGESSVVQALVGGEHIARRAKVMDAFRA---------------GESWG---------LVTTDFAARGLDVPRVSHVIMLDV--AGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVR 602
+LGY PT +Q L +L + DV++H+QTG+GKTLA++LPLL+ ID +++AVQALVVVP+RELGLQV VA++L G G N+D +EG E + T +S +KKI+IM LL+GS N RQ+AW AEPPH+VIG P L+ +V RGG+R + VK+VVVDEVDACL+ + L LL ++LSP++ E+ AT+ GS +G D G G + + +K+ +RQT+F SA+IPQH HF+KQCV+ WTLREP+ V+V+PGEL+PP L+H Y+V K K L ++++E A +IF+ R E +A +LA+ +G + G P G +V+ L + + RA M+ FR G G L++TD AARGLD+ +SHVI D+ + DTY+HRGGRAGR+G+ G V+SL++ + F L RLAN L +E+R
Sbjct: 3 NLGYVNPTLLQSRVLDILLPTLDTSTSTNESSEQQNQPSDVIIHAQTGSGKTLAYLLPLLSRIDPSRSAVQALVVVPTRELGLQVVRVARRLCGGGRVDVG---------VTNDDDNETDEGGNDEGVLDDNTDESSTPSKSKKIMIMPLLQGSSNTRQRAWAWAEPPHIVIGTPEELSSMVTRGGVRVNSVKIVVVDEVDACLSRGGNGGMSDGGSSSGTLHELLSRHLSPTY--QEVGRVATSVEGS----DGRTFQMSTSSDSGETSVGNHDLSSHTMNGFKVYADKYRQTIFASATIPQHNHFMKQCVRNGWTLREPIRVNVSPGELVPPTLKHVYVVCRDKGTKVGGLRRWMKKEIAAADDNNGGTKMLIFSDPRRPLETLADMLAKDFNGIVWREGYTPMQENGYDAVISVLRMEDSLGTRAAAMEGFRGPNERDNGAVGGYANQGSDIGKEKRDKLRILLSTDLAARGLDISGISHVINFDLPNDNDGDTYVHRGGRAGRLGKKGQVMSLITADQEFVLERLANRLALELR 525
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1210517958|dbj|GAX23124.1| (hypothetical protein FisN_33Lh012 [Fistulifera solaris]) HSP 1 Score: 321.627 bits (823), Expect = 2.400e-99 Identity = 205/533 (38.46%), Postives = 284/533 (53.28%), Query Frame = 0
Query: 107 VAENDGTT--AETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE---DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACLTSPETGRELQG-----LLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGE-LMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGES-----------SVVQALVGGEHIARRAKVMDAFRAGES---WGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKRPRSR 613
+ ++DG +T Q Y +LPSWLL R + LGY PT +Q AL +L E DVV+ ++TG+GKTL ++LP LA ID ++ VQA++VVP+RELGLQVA VAK+L + + KI IMS+L+GS+NRRQ+AW AEPP VVIG P L+++V+ GGI RY+ ++MVVVDEVDACL + +L LL K LS +FL KDE ++D G ++ +L RQT+ SA+IPQHKHFIKQCVQ +WT EP+ V + GE L+PP L H Y+V + K AAL F R+ + ++F + R E+MA LA QE ++ ++ L +++ +RA MDAF + L +TD AARGLDV V+HVI D+ +ADTY+HR GR GR+GR G V+S V+ + F L RLAN L +++R + K+ S+
Sbjct: 47 IYQSDGALDQTDTLLQRYQYQLPSWLLQRCQDLGYIHPTRIQIAALDVLLLDEHKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAILVVPTRELGLQVAKVAKRLVAA-----------------------------------------SPHKIYIMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFL--------------DKDE---------VEDTMGALSSTRPKR----RLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPVPFKVLVFAEEQRPLEEMALALAWEAEHGVYWQESTAKAVQDNPTDKPIQAITAVLRYQDNLTQRAAAMDAFTRSDDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSFVAPEQEFVLNRLANKLSLDLRCVARQKKATSK 510
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|299117280|emb|CBN75240.1| (DEAD box helicase [Ectocarpus siliculosus]) HSP 1 Score: 311.997 bits (798), Expect = 3.122e-96 Identity = 218/527 (41.37%), Postives = 291/527 (55.22%), Query Frame = 0
Query: 115 AETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAIL--EGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPW--KLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARS-----------------------GGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGV---MKRPR 611
A TF +L+ RLP WLL R+E LG+ PT VQ++AL IL E D V+H+QTG+GKTLAF+LPLL +D ++ AVQ LVVVP+RELGLQVA VAK+LA+ G GRD+ KI +MS+LEGS N+RQ+AW A+PPH+VIGNP SL +LV G +R + V VVVDEVDACL S T L LL + LSP+ A G ++ L GA GRV AP KL RQT+F SA++PQH HFI+QCVQ+QWTL EP+HV V E MPP L H Y+V P P LA LR + +G ++F + E +AA L ++ A G E + + + L + RA M FR G++ LV+TD AARGLDVP ++HV LD+ + + Y+HRGGRAGR+GRPG V+SLV+ + F + RL N + ++++++ + +RP+
Sbjct: 3 ARTFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFLLPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAA---------GTSSGRDS----------------------------KIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPT--------HADEDEGEDEEGAARLAEVGA---------GRVTGAAAPVNRKLRDRQTVFASATVPQHNHFIRQCVQKQWTLTEPVHVQVHAKEAMPPCLSHYYVVCP-----PEKKLAVLRTD-TRG-----LVFALATKPLEGIAASLDKALGGRGSGGGGGGERGGREQQQQQQQQAKGWDEQPPQPPLAEFLRQELGLNARADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRRPK 464
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1072237817|gb|OEU22544.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 283.878 bits (725), Expect = 6.395e-85 Identity = 183/523 (34.99%), Postives = 266/523 (50.86%), Query Frame = 0
Query: 111 DGTTAE-TFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGE--DVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGI-RYHQVKMVVVDEVDACL--TSPETG------------RELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARS--GGLAAGGQEPRGE----SSVVQALVGGEHIARRAKVMDAF-RAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMK 608
D T ++ +FS+LY D LP WLL + E Y PT +Q+ +L + + +V+ +QTG+GKTL ++LPLL+ ++ ++ +VQA++VVP+RELGLQVA VAK+L +K ++MSLLEGS +RQ+ W AE P VVIG P L +V GG+ R V VVVDEVDACL TS G L LL K+LSP+F+ + + + + K K HRQT+F SA+IPQH+HF+KQC QWTL EP++V +PGE +PP L H Y+V + K A L +++ + R + + LA S G+ ++ E + VV L + +++RA AF E + TTD AARGLD+ V+H+I D+ +ADTYLHR GRAGR+G+ G V+S+++ + F L RL+N+L ++V+ +G K
Sbjct: 60 DATLSDKSFSELYSDNLPEWLLEKCEEYNYKCPTLIQQRSLDCFFDDDPNSMVIQAQTGSGKTLTYLLPLLSKLE-DRASVQAMIVVPTRELGLQVAMVAKRLV--------------------------------------------GRKFMVMSLLEGSSLKRQRKWAWAETPQVVIGTPTELLDMVRYGGLPRISSVNTVVVDEVDACLVHTSSLQGGSNNSVDTKALASSLNELLSKFLSPTFIDEDDIIDDEVITIADD-----------------------SNKKRKRKFRHRQTIFCSATIPQHRHFLKQCKANQWTLEEPVYVCTSPGEHLPPTLDHAYMVCNSNEKKMATLRNIIKKLNTSSNKILVFFDSTSSRPLDIIGKKLALSIDNGIFYEDKKTNLEDIQSNPVVSILRFEDSLSQRAGATKAFAERSEFRIMATTDLAARGLDILGVTHIIHFDLPIDADTYLHRSGRAGRLGQKGSVISILNPDQEFVLKRLSNALSVDVKCVGRQK 514
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|971510947|dbj|GAQ87246.1| (ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidium nitens]) HSP 1 Score: 268.855 bits (686), Expect = 6.684e-79 Identity = 172/488 (35.25%), Postives = 252/488 (51.64%), Query Frame = 0
Query: 118 FSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEH--IARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGR---MGRPGWVVSLVSETEAFALVRLANSLKIE 600
++L G +P WL+ R E LGY PT Q EAL L+G D V+H+QTG+GKTL ++LP+L+GID +++VQA+VVVP+RELG+QVA VA+QLA +G+D + EE ++ + +G KI +M+LL+G+ RQK W+ A+PPH+V+G P + +++E +R + +K +VVDE DA + T G L K L+ ++ EA A RQT+F SA++PQH + + V+ +W + +HVHV P + +P L H YLV DK +L + R++ A +IF D E K +A E G+ +Q L+ E+ + +RA ++ FR G LV TD AARGLD+P VSHV D+ +A +Y+HR GR R G G V LVS E FAL RL N++++E
Sbjct: 122 LARLCGRSVPDWLIRRAEDLGYGTPTGAQTEALPLALQGRDCVIHAQTGSGKTLTYLLPVLSGIDPKRSSVQAIVVVPTRELGIQVARVARQLAG-----KGKDQVAD------------EEAANTKKLKSG--------KIQVMALLDGAGGNRQKIWLKADPPHLVVGTPDRIHKMIEYRNLRTNGLKFIVVDEFDAYPAATRT----TGSLNKLLT-------VDSEAGA----------------------------------------RQTIFASATVPQHNRAVTELVKNKWARNDLVHVHVDPIQHVPKFLDHRYLVCEGD-DKIKSLQKLVERDQPS----AAIIFAHDLTERNKRTGETPSVEAVAEALSE--GQPEALQPLLLQENARVQKRASIVQEFREGNRRLLVATDLAARGLDLPEVSHVYNFDLPLDATSYVHRAGRTARKPIAGTKGTVTCLVSSKEVFALKRLLNAIRVE 526
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|168052082|ref|XP_001778480.1| (predicted protein [Physcomitrella patens] >gi|162670078|gb|EDQ56653.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 261.922 bits (668), Expect = 1.097e-77 Identity = 167/496 (33.67%), Postives = 249/496 (50.20%), Query Frame = 0
Query: 118 FSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLA--AGGQEPRGESSVVQALVGGE--HIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRM---GRPGWVVSLVSETEAFALVRLANSLKIEVRRMGV 606
S+L +++P ++L + E +GY+ PT VQ+EAL +L G D ++H+QTG+GKTLA++LP+ A I + AVQA+VVVP+RELG+QVA VA++LA G+ G EE A +E+G +++M+LLEG N RQKAW+ AEPP +V+G +A+++E +R + V +V+DEVDA + + + G L LL +Y P RQT+ SA+IPQH+ F+ C+Q +W + MH+HV P + MP L H Y+V K D+ ALL+ L+ + + A +IF D E K A + +A + + ++ + LV E H+ RA + FR G LV T+ AARGLD+P VSHV + +Y+HR GR GR G V S ++ E F L RL N + ++ + V
Sbjct: 4 LSKLCMNKVPEYVLRKAEEVGYSVPTLVQQEALPVLLSGRDCILHAQTGSGKTLAYLLPIFAKILPARAAVQAIVVVPTRELGMQVAKVARKLA-------GKGGSEEDGKAP------KEKGT-----------------VMVMTLLEGGTNSRQKAWLKAEPPQIVVGTLERIARMIETKNLRTNAVNTIVIDEVDAMMGAAKEGGHLHKLLSEYTRPQ---------------------------------------------------QRQTILASATIPQHRRFLNDCIQNKWVKEDVMHIHVRPEDKMPSYLHHRYVVC-EKDDRLPALLSLLQSDAPR----AAIIFVNDQSEKAKRAGNTPTTITVADYIAKMKFSSDDALWEPLVLEEESHVNARAATLADFRDGRCL-LVATELAARGLDLPEVSHVYNFEWPPSVTSYIHRAGRTGRQPITEELGTVTSFITPKELFVLRRLENEMMLKFEALKV 412
BLAST of EWM21889.1 vs. NCBI_GenBank
Match: gi|1111026073|ref|XP_019264117.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Nicotiana attenuata] >gi|1102290368|gb|OIT36665.1| dead-box atp-dependent rna helicase 58, chloroplastic [Nicotiana attenuata]) HSP 1 Score: 244.973 bits (624), Expect = 1.285e-70 Identity = 162/497 (32.60%), Postives = 236/497 (47.48%), Query Frame = 0
Query: 111 DGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGLAAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRM---GRPGWVVSLVSETEAFALVRLANSLKIEVRRM 604
D +TA T +L +P ++ RVE +GY PT VQ +AL + G D V+H+QTG+GKTLA++L +L+ ID ++AVQAL+VVP+RELG+QV VA+ LA+ P E G K +M+LL+G R K+W+ AEPP +V+ SL Q++E+ ++ +++VVDEVD S + L+ LL Y SSK+ RQT+F SASIPQH+ F+ CVQQ+WT + +HVHV E MP L H ++V TK +K LL+ L+ + ++ +IF ++ E K A L G S V L + +RA + R G + LV TD AARG+D+P +H+ D+ +A YLHR GR GR + +V S+++ E F L R N L ++
Sbjct: 60 DSSTA-TLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSGKTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAA--------------------KPSELESG---------------PKSCTVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHVLKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSY------------------SSSKN---------------------------------RQTIFASASIPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVC-TKREKNQVLLSLLQVDSP----ESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSELRGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELMFRCEQL 464 The following BLAST results are available for this feature:
BLAST of EWM21889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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