rna8803, rna8803 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8803
Unique Name	rna8803
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1032
Alignment location	KK037250.1:205717..207065 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100070g29.4219.mrna
Orig protein id	gnl\|cribi\|Naga_100070g29.4219
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:205717..207065 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g29	gene8534	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8803	rna8803-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21905.1	cds8773	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:205717..207065-
coding sequence from alignment at KK037250.1:205717..207065-

mRNA sequence

>rna8803 ID=rna8803|Name=rna8803|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp
ATGACGCCAGGTCGGTCGCAAACTGGGCTTCTCCTACTTCTCTTCGCCAC
GTCGTCTATTTTGCTCGCAGAGGGCTTCCATCAAGCTCCCGGCGCACGCA
CCTCTGTGTCCTCCCTCCGGCCACCTCGACAAATCCATCGGCTGCCGCAA
TCGCGATGTTACGCTTTGGACCCTGCATTCGTCACGGACGCTGCGCTGAA
TGGCGGGGTCGGCGGCGGCCCACAGCAAGTAGCGGAGGCCATGCTTGCGC
TGCTGCGAGGGCCTTCCGGAGTTGGCATTTTCGGCCTAACAGCTCTGCTT
ATACGGCTATACACTTACTTTACGGTCCAGTCCTACATAGCAAAACTTTG
TACACTTTTTGCGGACAATGGAACAACAGTTGAGCTTCGTTATGGAAACT
CGCTCCGAAACCTCTTTTATTACGAGCCGGGGCCCGGAAAGATGGATCAG
CTTTTAATTCCCTCAGGCGATCCCAAGAACCTGCAGACTATTGCCGAGGT
GTGCGCGCGGCTAAAAGTAGCGGCAAAAGCGACGTACAGCGTGACGGCCC
TTCCAGAGACGTTTGAAGCACTAAAGCTTCCGGCTGAGAGTGTAGACACG
GTGGTCTCCACCTACATGCTCAACAAGAGCAAGCAGCCCCTCGTGACCTT
TGCCAAGGCCATGGATATGTTGAAAGACGATGGTGTCTTTGTCTTCGTTG
AGCCCGTTTGCGGTGATAATCCCTTGCTGGGCGGGATCCGCAAGTATCTG
GGGGCCATCCATCGGGCCACAGGTGCGTTCGGCGACCCGGGCCTTGACCT
CAAGAACCTCGTGAACGCCTGGGCCGAGCAAGTGGGCAAAGCGGAGGGGA
TAGAGCTAGACCTAGACGTGGAAGAACAATCCTACTTTTTGGATCCGCAT
ATCGTGGGAGTCATGTACAAGAGAAAGGTGGACCGGGGTCCGGACTACGA
GCCTAGTAAGTCCGAAAAACGCAAGCTTGCTCGCAGACGGGGAATGACCA
CCACCAGCAAGGGCTTCGGCAGCAGTAGCTGA

protein sequence of rna8803

>rna8803-protein ID=rna8803-protein|Name=rna8803|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MAAVQGSIRGLETAPKFAYSRKGRPLCRLIVMYSCIALTRGFLMPAPRGS
SALHSVPFREFARTEGKAASADPGAEFMRHGKGSSSEGAGNSTATRSRSK
LPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVMGLISSNVP
FFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTL
TMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFR
EDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVS
QVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPAL
LDSGNKDEELREMHRKLSAIRAFTVDYVAEMK

mRNA from alignment at KK037250.1:205717..207065-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8803 ID=rna8803|Name=rna8803|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp|location=Sequence derived from alignment at KK037250.1:205717..207065- (Nannochloropsis gaditana)
ATGGCAGCTGTACAAGGGAGCATACGAGGCTTGGAGACCGCGCCAAAATT
TGCATACAGTAGAAAAGGCCGGCCACTTTGTCGCCTGATCGTCATGTATT
CGTGTATAGCCTTGACGAGAGGTTTCTTGATGCCGGCCCCGCGCGGGAGC
AGCGCACTTCATTCAGTCCCTTTTCGTGAATTCGCCAGGACAGAGGGTAA
GGCCGCTTCAGCCGATCCAGGCGCTGAGTTTATGCGACACGGTAAGGGCA
GCAGCAGTGAAGGCGCGGGTAATTCTACAGCCACTCGAAGCCGGTCGAAG
CTGCCGCCTATGAAGGAGACCATGCAGCTCCTCTTCTCGCCAGATAAACG
TCAAGGTACGACATCTTGATCAATACTCTTCTCTTGACGGACGAATACCC
CTCTCGTCAGCACAGCCATTTTTTCATGATAATTGCTCAATACACATCTC
TTCCTTCCTAGTGGATCAAGAGCGGGCCCGTTTTAGGGAGGTGATCCATA
CCATGCAAGCAGCGCCGATGGAGAACGTTATGGGCCTCATCTCCAGTAAT
GTGCCTTTCTTTCTGGGCACGAACACGTCCTTATTTATGCAGGAAATGCT
GGAGGAGCTGGACAGCATGGATCCGGCGACCCCGGTGCCCCTTGGAGGCG
GCTATCAGGTCACGGTGGAGCAGCAGCGAACCGCCTTGGTCAACCTCTTC
ACGCTTACAATGGATTTTATCGAAGGATTTGTCTCGCACACTCAGGGCGA
GCTCCGTTCTCATCAAGCCGTTTTGAAGGAAATCATGGAGGCGGCGCAAA
AGAGTACGTGATCAGCACTTGATGCATCTTGCTCCCTTTGACCCCAATCG
CGGTTGGCTTCTGACTCCTCGAAACCTCGCTTCCCTTGTTATCATAGAAT
CAAGCGCGGAACTGGACGCGACATTAAAAAGACTGCGGCCGCAATTCCGG
GAAGATTTTGTCACATACCTGAGAGGAGAATACGAGCGCGTCTCTACCCC
GCCCATGACAGAGGATTCTGTGGTGCTGGCTAATCTTCTTCAGGCCATAC
AGGCACGGGTACTCGCAGAAGTGGAGGATATGATGGGCTCCGACGTTAGC
CAGGTCTCTCGTCTGTTGGCCTTCTCTGACGAGGAGCAAGTGGTCACAGC
TTTGCGGGGATCTTTCTTGGCCGGTAGCCTTCAACCAGACCAATTTCTTG
AGATGGTGGAGACGGTACTGGCGGACTTGGACGAACGTATGCCAGCTCTG
TTGGATTCAGGCAACAAGGATGAAGAGCTGCGGGAGATGCACCGGAAACT
TAGTGCTATCCGGGCCTTCACTGTCGACTACGTAGCTGAAATGAAGTAA

Coding sequence (CDS) from alignment at KK037250.1:205717..207065-

>rna8803 ID=rna8803|Name=rna8803|organism=Nannochloropsis gaditana|type=CDS|length=3447bp|location=Sequence derived from alignment at KK037250.1:205717..207065- (Nannochloropsis gaditana)
AATCAAGCGCGGAACTGGACGCGACATTAAAAAGACTGCGGCCGCAATTC
CGGGAAGATTTTGTCACATACCTGAGAGGAGAATACGAGCGCGTCTCTAC
CCCGCCCATGACAGAGGATTCTGTGGTGCTGGCTAATCTTCTTCAGGCCA
TACAGGCACGGGTACTCGCAGAAGTGGAGGATATGATGGGCTCCGACGTT
AGCCAGGTCTCTCGTCTGTTGGCCTTCTCTGACGAGGAGCAAGTGGTCAC
AGCTTTGCGGGGATCTTTCTTGGCCGGTAGCCTTCAACCAGACCAATTTC
TTGAGATGGTGGAGACGGTACTGGCGGACTTGGACGAACGTATGCCAGCT
CTGTTGGATTCAGGCAACAAGGATGAAGAGCTGCGGGAGATGCACCGGAA
ACTTAGTGCTATCCGGGCCTTCACTGTCGACTACGTAGCTGAAATGAAGT
AATGGATCAAGAGCGGGCCCGTTTTAGGGAGGTGATCCATACCATGCAAG
CAGCGCCGATGGAGAACGTTATGGGCCTCATCTCCAGTAATGTGCCTTTC
TTTCTGGGCACGAACACGTCCTTATTTATGCAGGAAATGCTGGAGGAGCT
GGACAGCATGGATCCGGCGACCCCGGTGCCCCTTGGAGGCGGCTATCAGG
TCACGGTGGAGCAGCAGCGAACCGCCTTGGTCAACCTCTTCACGCTTACA
ATGGATTTTATCGAAGGATTTGTCTCGCACACTCAGGGCGAGCTCCGTTC
TCATCAAGCCGTTTTGAAGGAAATCATGGAGGCGGCGCAAAAGAATGGCA
GCTGTACAAGGGAGCATACGAGGCTTGGAGACCGCGCCAAAATTTGCATA
CAGTAGAAAAGGCCGGCCACTTTGTCGCCTGATCGTCATGTATTCGTGTA
TAGCCTTGACGAGAGGTTTCTTGATGCCGGCCCCGCGCGGGAGCAGCGCA
CTTCATTCAGTCCCTTTTCGTGAATTCGCCAGGACAGAGGGTAAGGCCGC
TTCAGCCGATCCAGGCGCTGAGTTTATGCGACACGGTAAGGGCAGCAGCA
GTGAAGGCGCGGGTAATTCTACAGCCACTCGAAGCCGGTCGAAGCTGCCG
CCTATGAAGGAGACCATGCAGCTCCTCTTCTCGCCAGATAAACGTCAAGA
ATCAAGCGCGGAACTGGACGCGACATTAAAAAGACTGCGGCCGCAATTCC
GGGAAGATTTTGTCACATACCTGAGAGGAGAATACGAGCGCGTCTCTACC
CCGCCCATGACAGAGGATTCTGTGGTGCTGGCTAATCTTCTTCAGGCCAT
ACAGGCACGGGTACTCGCAGAAGTGGAGGATATGATGGGCTCCGACGTTA
GCCAGGTCTCTCGTCTGTTGGCCTTCTCTGACGAGGAGCAAGTGGTCACA
GCTTTGCGGGGATCTTTCTTGGCCGGTAGCCTTCAACCAGACCAATTTCT
TGAGATGGTGGAGACGGTACTGGCGGACTTGGACGAACGTATGCCAGCTC
TGTTGGATTCAGGCAACAAGGATGAAGAGCTGCGGGAGATGCACCGGAAA
CTTAGTGCTATCCGGGCCTTCACTGTCGACTACGTAGCTGAAATGAAGTA
ATGGATCAAGAGCGGGCCCGTTTTAGGGAGGTGATCCATACCATGCAAGC
AGCGCCGATGGAGAACGTTATGGGCCTCATCTCCAGTAATGTGCCTTTCT
TTCTGGGCACGAACACGTCCTTATTTATGCAGGAAATGCTGGAGGAGCTG
GACAGCATGGATCCGGCGACCCCGGTGCCCCTTGGAGGCGGCTATCAGGT
CACGGTGGAGCAGCAGCGAACCGCCTTGGTCAACCTCTTCACGCTTACAA
TGGATTTTATCGAAGGATTTGTCTCGCACACTCAGGGCGAGCTCCGTTCT
CATCAAGCCGTTTTGAAGGAAATCATGGAGGCGGCGCAAAAGAATGGCAG
CTGTACAAGGGAGCATACGAGGCTTGGAGACCGCGCCAAAATTTGCATAC
AGTAGAAAAGGCCGGCCACTTTGTCGCCTGATCGTCATGTATTCGTGTAT
AGCCTTGACGAGAGGTTTCTTGATGCCGGCCCCGCGCGGGAGCAGCGCAC
TTCATTCAGTCCCTTTTCGTGAATTCGCCAGGACAGAGGGTAAGGCCGCT
TCAGCCGATCCAGGCGCTGAGTTTATGCGACACGGTAAGGGCAGCAGCAG
TGAAGGCGCGGGTAATTCTACAGCCACTCGAAGCCGGTCGAAGCTGCCGC
CTATGAAGGAGACCATGCAGCTCCTCTTCTCGCCAGATAAACGTCAAGAA
TCAAGCGCGGAACTGGACGCGACATTAAAAAGACTGCGGCCGCAATTCCG
GGAAGATTTTGTCACATACCTGAGAGGAGAATACGAGCGCGTCTCTACCC
CGCCCATGACAGAGGATTCTGTGGTGCTGGCTAATCTTCTTCAGGCCATA
CAGGCACGGGTACTCGCAGAAGTGGAGGATATGATGGGCTCCGACGTTAG
CCAGGTCTCTCGTCTGTTGGCCTTCTCTGACGAGGAGCAAGTGGTCACAG
CTTTGCGGGGATCTTTCTTGGCCGGTAGCCTTCAACCAGACCAATTTCTT
GAGATGGTGGAGACGGTACTGGCGGACTTGGACGAACGTATGCCAGCTCT
GTTGGATTCAGGCAACAAGGATGAAGAGCTGCGGGAGATGCACCGGAAAC
TTAGTGCTATCCGGGCCTTCACTGTCGACTACGTAGCTGAAATGAAGTAA
TGGATCAAGAGCGGGCCCGTTTTAGGGAGGTGATCCATACCATGCAAGCA
GCGCCGATGGAGAACGTTATGGGCCTCATCTCCAGTAATGTGCCTTTCTT
TCTGGGCACGAACACGTCCTTATTTATGCAGGAAATGCTGGAGGAGCTGG
ACAGCATGGATCCGGCGACCCCGGTGCCCCTTGGAGGCGGCTATCAGGTC
ACGGTGGAGCAGCAGCGAACCGCCTTGGTCAACCTCTTCACGCTTACAAT
GGATTTTATCGAAGGATTTGTCTCGCACACTCAGGGCGAGCTCCGTTCTC
ATCAAGCCGTTTTGAAGGAAATCATGGAGGCGGCGCAAAAGAATGGCAGC
TGTACAAGGGAGCATACGAGGCTTGGAGACCGCGCCAAAATTTGCATACA
GTAGAAAAGGCCGGCCACTTTGTCGCCTGATCGTCATGTATTCGTGTATA
GCCTTGACGAGAGGTTTCTTGATGCCGGCCCCGCGCGGGAGCAGCGCACT
TCATTCAGTCCCTTTTCGTGAATTCGCCAGGACAGAGGGTAAGGCCGCTT
CAGCCGATCCAGGCGCTGAGTTTATGCGACACGGTAAGGGCAGCAGCAGT
GAAGGCGCGGGTAATTCTACAGCCACTCGAAGCCGGTCGAAGCTGCCGCC
TATGAAGGAGACCATGCAGCTCCTCTTCTCGCCAGATAAACGTCAAG

Synonyms

Publications