EWM21905.1, cds8773 (CDS) Nannochloropsis gaditana

Overview
NameEWM21905.1
Unique Namecds8773
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:206711..207065 -
Alignment locationKK037250.1:206263..206604 -
Alignment locationKK037250.1:205717..206168 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21905.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100070g29.4219.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:206711..207065 -
KK037250.1supercontigKK037250.1:206263..206604 -
KK037250.1supercontigKK037250.1:205717..206168 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21905.1 vs. NCBI_GenBank
Match: gi|585102251|gb|EWM21905.1| (hypothetical protein Naga_100070g29 [Nannochloropsis gaditana])

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query:    1 MAAVQGSIRGLETAPKFAYSRKGRPLCRLIVMYSCIALTRGFLMPAPRGSSALHSVPFREFARTEGKAASADPGAEFMRHGKGSSSEGAGNSTATRSRSKLPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK 382
            MAAVQGSIRGLETAPKFAYSRKGRPLCRLIVMYSCIALTRGFLMPAPRGSSALHSVPFREFARTEGKAASADPGAEFMRHGKGSSSEGAGNSTATRSRSKLPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK
Sbjct:    1 MAAVQGSIRGLETAPKFAYSRKGRPLCRLIVMYSCIALTRGFLMPAPRGSSALHSVPFREFARTEGKAASADPGAEFMRHGKGSSSEGAGNSTATRSRSKLPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK 382          
BLAST of EWM21905.1 vs. NCBI_GenBank
Match: gi|298710081|emb|CBJ31797.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 3.896e-8
Identity = 66/275 (24.00%), Postives = 124/275 (45.09%), Query Frame = 0
Query:   66 GKAASADPGAEFMRHGKGSSSEGAGNSTATRSRSKLPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVM-GLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERV--------------STP------PMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALR 319
            G     DP  + +   + ++S+ +G+S+  R  + LPP          P+     ++R RF  ++  +     E  +  ++S +V F L  + +    +++ +                + T+ +  T L N +   + F+E  V  T    + +Q +L+ I+EAA K S    D  +K L+ +F  +FV YL GE ER+                P      PM  D   + N+++ ++ RV A+++ MMG DV+ ++R+L++ D   +  ALR
Sbjct:  170 GAGFVGDPFVDLIAPTEYAASDASGDSS--RDSTPLPPSPAGGATPPLPEP--TTRDRQRFERIMEEVLEEEKEEELPAILSRHVDFLLSVDVTALTNDLIRQ----------------EPTLTRVNT-LRNAYEFIVSFLESMVESTVDVQKENQTLLRLIIEAA-KTSPEVFDKRMKNLQDRFTFEFVKYLDGEVERLEKVEKDMAEKKKKRKVPAEKDDMPMGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAALR 422          
The following BLAST results are available for this feature:
BLAST of EWM21905.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102251|gb|EWM21905.1|0.000e+0100.00hypothetical protein Naga_100070g29 [Nannochlorops... [more]
gi|298710081|emb|CBJ31797.1|3.896e-824.00conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8803rna8803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications