rna8802, rna8802 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8802
Unique Name	rna8802
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1767
Alignment location	KK037250.1:204100..205460 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100070g28.4216.mrna
Orig protein id	gnl\|cribi\|Naga_100070g28.4216
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:204100..205460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g28	gene8533	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8802	rna8802-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21902.1	cds8772	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:204100..205460-
coding sequence from alignment at KK037250.1:204100..205460-

mRNA sequence

>rna8802 ID=rna8802|Name=rna8802|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp
ATGAGAACATACGATAAGACGGACGTGGCCTTGCCTCTGGCTCCACGCAA
TGAAGAAGAAACTACCGTTTTACTTCAAGAGGCCCTAGGGATGGCAGCCA
CGACCGGATTGCTTATGCGAAGCGCGGGCGGTAGCCGGACTGACAGCGCT
CATGTCAAGCCTGCATTCTGCCACGCACCCGTGTGCTTGCTTCCCAACGC
ACTCCCCGTCCAGGAGTACGTCAAGGCTAGGCGCTTGGCCACAATCTGGA
ACCTGCTCGTCGCACGGATTGCTCACGATGGGCCATGGCTACTGCAAACA
CTGGCAAGCGTGCTCCCTCATGATGAATTTACCCGGCGGCTTGTTGAAAT
CTTCCAGGCAATCAATGGAGCCGGACGGGACGTGCAAAAAATTCAATTGG
GTATCACTCGCAGCGACTACATGCTCCACGCAGGAGAAAGCGGTTCGGGT
TCGCCTGAGCTGAAACAGGTGGAGATCAACACCATTGCCGCCTCCTTCGG
CTGCTTGTCCACCCAGGTCACGCGGTTGCATCAATATCTTGTTCAGAAAG
TCCTCGGCCACTCCCGTCTGTCTTCAAAATCCTTTATCCTTCCACATAAT
GAGACCATGCGAGGGCTGGCTCATGGGCTCGCCGCAGCGCATAAGGAATA
TCTGCGGCAAGAATCTGTGATGTTCAAGCCCTCCCAGCCCTCCCGACCTG
GTCGCCGCCCCTGCGTGCTCATGCTGGTTCAAGCTGATGAGCGCAACATA
AACGATCAGAAACTCCTAGAAATCTGTCTTTGGGAGGAATTCGGCGTTCT
TCTACACCGTGCTACGCTCCTGGAAGTCGCTCGTAATGCGCATTTGGACC
TGCAGCGACGCCAAAATTTGTTGCTCGTGTCGCCCTTAATCTCAGACACG
GGCGAGGAAGATGTGCAAGAAGCAGAGGTGGAAGTAACGGTTGCGTATTT
TCGCGCAGGATACGATCCCAGCGACTATTCGAGCGAAGGAGAGTGGAAAG
GGCGGGAACTTATAGAGATGTCGGCTGCCATAAAGTGTCCTAGCATATCC
CACCATCTGGCCGGCACCAAGAAAGTCCAGGAAGCTCTCTGTCGGCCGGG
GGTGCTCGAACGTTTCCTTAAAGATGCCGAAGATGTGGATGCCATCCGGA
ACTGTTTTGTTGGGTTGTACGGACTTGACCCGGAATGTGAAGGCGCAACG
GCGGCGGTGGCTGCGGCCTGTAATAGTCCTCAACACTTTGTGCTGAAGCC
TCAACGTGAAGGGGGCGGGCATAACTTGTATGACCAGGATCTTGTGGAGG
CATTGTCACAGATGACAGCAGAGGAGCGAGCTGCCTACATACTGATGGAG
AAAATTCGACCTCCGCCATTTGAAGCATTTTTCCTTCGAGACTGCAGTGT
CCTTCGCGGACTTGCAGTTCTCGAGTTGGGTGTTTACGGAGTGTACTTGG
GTGACGGTGAAGGTAAACGCGTCATTCTCAACGAATCTGTCGGCCATCTG
TTGAGGACAAAGCTGGCTAGCAGCCACGAAGGCGGAGTCGCCGCAGGATT
TGCCGTCCTCAGTAGTCCTTTGCTAGTCGGAGGAGGTGAAGATAGTGGCA
TATTGAGCAAAAAGTATTTTTCGACATTGCGAGAGTTCACCATGTCGGCG
CGTGTCTGGCGAAGACAAAGATTTTGGAAAATAGGTGCAACGGGCATAGC
CTTTTGGGGAGTCGGGTTGTTTTTAACATACATTGCTGTAAGCAAGAGAA
GTGGAAAGTTGCAATAG

protein sequence of rna8802

>rna8802-protein ID=rna8802-protein|Name=rna8802|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MTPGRSQTGLLLLLFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQ
SRCYALDPAFVTDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALL
IRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQ
LLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDT
VVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYL
GAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPH
IVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTTTSKGFGSSS

mRNA from alignment at KK037250.1:204100..205460-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8802 ID=rna8802|Name=rna8802|organism=Nannochloropsis gaditana|type=mRNA|length=1361bp|location=Sequence derived from alignment at KK037250.1:204100..205460- (Nannochloropsis gaditana)
ATGACGCCAGGTCGGTCGCAAACTGGGCTTCTCCTACTTCTCTTCGCCAC
GTCGTCTATTTTGCTCGCAGAGGGCTTCCATCAAGCTCCCGGCGCACGCA
CCTCTGTGTCCTCCCTCCGGCCACCTCGACAAATCCATCGGCTGCCGCAA
TCGCGATGTTACGCTTTGGACCCTGCATTCGTCACGGACGCTGCGCTGAA
TGGCGGGGTCGGCGGCGGCCCACAGCAAGTAGCGGAGGCCATGCTTGCGC
TGCTGCGAGGGCCTTCCGGAGTTGGCATTTTCGGCCTAACAGCTCTGCTT
ATACGGCTATACACTTACTTTACGGTCCAGTCCTACATAGCAAAACTTTG
TACACTTTTTGCGGACAATGGAACAACAGTTGAGGTGCGTTCGGTAGGAG
TAAGTGGACCAATCAGGGACTCTAGAGCTTGATTGGCAGATGAACATCCT
TCCTTCTCGAGAGACATTGATGTAGCGTGCGTTTACTGGTGATATTTTTG
GAGCGACCTGGCTTAGCATCCTTTACGGTTTTGGGGCTCTGAAGTTAAGG
CAAGGGACGACCTAGTATGCGACCACTCATGTCCATTCCCGTGCTCCAAC
TCCAGCTTCGTTATGGAAACTCGCTCCGAAACCTCTTTTATTACGAGCCG
GGGCCCGGAAAGATGGATCAGCTTTTAATTCCCTCAGGCGATCCCAAGAA
CCTGCAGACTATTGCCGAGGTACGTGAACCAGTGTTTGTGTCAGATGGCA
GAGCGGTGAACGTCTTCTCAGTAGCATTCGTGGGAGTTCCCTCTTATTCT
ATTTCTCACGAGGCTTCGTATAAACAGGTGTGCGCGCGGCTAAAAGTAGC
GGCAAAAGCGACGTACAGCGTGACGGCCCTTCCAGAGACGTTTGAAGCAC
TAAAGCTTCCGGCTGAGAGTGTAGACACGGTGGTCTCCACCTACATGCTC
AACAAGAGCAAGCAGCCCCTCGTGACCTTTGCCAAGGCCATGGATATGTT
GAAAGACGATGGTGTCTTTGTCTTCGTTGAGCCCGTTTGCGGTGATAATC
CCTTGCTGGGCGGGATCCGCAAGTATCTGGGGGCCATCCATCGGGCCACA
GGTGCGTTCGGCGACCCGGGCCTTGACCTCAAGAACCTCGTGAACGCCTG
GGCCGAGCAAGTGGGCAAAGCGGAGGGGATAGAGCTAGACCTAGACGTGG
AAGAACAATCCTACTTTTTGGATCCGCATATCGTGGGAGTCATGTACAAG
AGAAAGGTGGACCGGGGTCCGGACTACGAGCCTAGTAAGTCCGAAAAACG
CAAGCTTGCTCGCAGACGGGGAATGACCACCACCAGCAAGGGCTTCGGCA
GCAGTAGCTGA

Coding sequence (CDS) from alignment at KK037250.1:204100..205460-

>rna8802 ID=rna8802|Name=rna8802|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at KK037250.1:204100..205460- (Nannochloropsis gaditana)
GTGTGCGCGCGGCTAAAAGTAGCGGCAAAAGCGACGTACAGCGTGACGGC
CCTTCCAGAGACGTTTGAAGCACTAAAGCTTCCGGCTGAGAGTGTAGACA
CGGTGGTCTCCACCTACATGCTCAACAAGAGCAAGCAGCCCCTCGTGACC
TTTGCCAAGGCCATGGATATGTTGAAAGACGATGGTGTCTTTGTCTTCGT
TGAGCCCGTTTGCGGTGATAATCCCTTGCTGGGCGGGATCCGCAAGTATC
TGGGGGCCATCCATCGGGCCACAGGTGCGTTCGGCGACCCGGGCCTTGAC
CTCAAGAACCTCGTGAACGCCTGGGCCGAGCAAGTGGGCAAAGCGGAGGG
GATAGAGCTAGACCTAGACGTGGAAGAACAATCCTACTTTTTGGATCCGC
ATATCGTGGGAGTCATGTACAAGAGAAAGGTGGACCGGGGTCCGGACTAC
GAGCCTAGTAAGTCCGAAAAACGCAAGCTTGCTCGCAGACGGGGAATGAC
CACCACCAGCAAGGGCTTCGGCAGCAGTAGCTGACTTCGTTATGGAAACT
CGCTCCGAAACCTCTTTTATTACGAGCCGGGGCCCGGAAAGATGGATCAG
CTTTTAATTCCCTCAGGCGATCCCAAGAACCTGCAGACTATTGCCGAGAT
GACGCCAGGTCGGTCGCAAACTGGGCTTCTCCTACTTCTCTTCGCCACGT
CGTCTATTTTGCTCGCAGAGGGCTTCCATCAAGCTCCCGGCGCACGCACC
TCTGTGTCCTCCCTCCGGCCACCTCGACAAATCCATCGGCTGCCGCAATC
GCGATGTTACGCTTTGGACCCTGCATTCGTCACGGACGCTGCGCTGAATG
GCGGGGTCGGCGGCGGCCCACAGCAAGTAGCGGAGGCCATGCTTGCGCTG
CTGCGAGGGCCTTCCGGAGTTGGCATTTTCGGCCTAACAGCTCTGCTTAT
ACGGCTATACACTTACTTTACGGTCCAGTCCTACATAGCAAAACTTTGTA
CACTTTTTGCGGACAATGGAACAACAGTTGAGGTGTGCGCGCGGCTAAAA
GTAGCGGCAAAAGCGACGTACAGCGTGACGGCCCTTCCAGAGACGTTTGA
AGCACTAAAGCTTCCGGCTGAGAGTGTAGACACGGTGGTCTCCACCTACA
TGCTCAACAAGAGCAAGCAGCCCCTCGTGACCTTTGCCAAGGCCATGGAT
ATGTTGAAAGACGATGGTGTCTTTGTCTTCGTTGAGCCCGTTTGCGGTGA
TAATCCCTTGCTGGGCGGGATCCGCAAGTATCTGGGGGCCATCCATCGGG
CCACAGGTGCGTTCGGCGACCCGGGCCTTGACCTCAAGAACCTCGTGAAC
GCCTGGGCCGAGCAAGTGGGCAAAGCGGAGGGGATAGAGCTAGACCTAGA
CGTGGAAGAACAATCCTACTTTTTGGATCCGCATATCGTGGGAGTCATGT
ACAAGAGAAAGGTGGACCGGGGTCCGGACTACGAGCCTAGTAAGTCCGAA
AAACGCAAGCTTGCTCGCAGACGGGGAATGACCACCACCAGCAAGGGCTT
CGGCAGCAGTAGCTGACTTCGTTATGGAAACTCGCTCCGAAACCTCTTTT
ATTACGAGCCGGGGCCCGGAAAGATGGATCAGCTTTTAATTCCCTCAGGC
GATCCCAAGAACCTGCAGACTATTGCCGAGATGACGCCAGGTCGGTCGCA
AACTGGGCTTCTCCTACTTCTCTTCGCCACGTCGTCTATTTTGCTCGCAG
AGGGCTTCCATCAAGCTCCCGGCGCACGCACCTCTGTGTCCTCCCTCCGG
CCACCTCGACAAATCCATCGGCTGCCGCAATCGCGATGTTACGCTTTGGA
CCCTGCATTCGTCACGGACGCTGCGCTGAATGGCGGGGTCGGCGGCGGCC
CACAGCAAGTAGCGGAGGCCATGCTTGCGCTGCTGCGAGGGCCTTCCGGA
GTTGGCATTTTCGGCCTAACAGCTCTGCTTATACGGCTATACACTTACTT
TACGGTCCAGTCCTACATAGCAAAACTTTGTACACTTTTTGCGGACAATG
GAACAACAGTTGAGGTGTGCGCGCGGCTAAAAGTAGCGGCAAAAGCGACG
TACAGCGTGACGGCCCTTCCAGAGACGTTTGAAGCACTAAAGCTTCCGGC
TGAGAGTGTAGACACGGTGGTCTCCACCTACATGCTCAACAAGAGCAAGC
AGCCCCTCGTGACCTTTGCCAAGGCCATGGATATGTTGAAAGACGATGGT
GTCTTTGTCTTCGTTGAGCCCGTTTGCGGTGATAATCCCTTGCTGGGCGG
GATCCGCAAGTATCTGGGGGCCATCCATCGGGCCACAGGTGCGTTCGGCG
ACCCGGGCCTTGACCTCAAGAACCTCGTGAACGCCTGGGCCGAGCAAGTG
GGCAAAGCGGAGGGGATAGAGCTAGACCTAGACGTGGAAGAACAATCCTA
CTTTTTGGATCCGCATATCGTGGGAGTCATGTACAAGAGAAAGGTGGACC
GGGGTCCGGACTACGAGCCTAGTAAGTCCGAAAAACGCAAGCTTGCTCGC
AGACGGGGAATGACCACCACCAGCAAGGGCTTCGGCAGCAGTAGCTGACT
TCGTTATGGAAACTCGCTCCGAAACCTCTTTTATTACGAGCCGGGGCCCG
GAAAGATGGATCAGCTTTTAATTCCCTCAGGCGATCCCAAGAACCTGCAG
ACTATTGCCGAGATGACGCCAGGTCGGTCGCAAACTGGGCTTCTCCTACT
TCTCTTCGCCACGTCGTCTATTTTGCTCGCAGAGGGCTTCCATCAAGCTC
CCGGCGCACGCACCTCTGTGTCCTCCCTCCGGCCACCTCGACAAATCCAT
CGGCTGCCGCAATCGCGATGTTACGCTTTGGACCCTGCATTCGTCACGGA
CGCTGCGCTGAATGGCGGGGTCGGCGGCGGCCCACAGCAAGTAGCGGAGG
CCATGCTTGCGCTGCTGCGAGGGCCTTCCGGAGTTGGCATTTTCGGCCTA
ACAGCTCTGCTTATACGGCTATACACTTACTTTACGGTCCAGTCCTACAT
AGCAAAACTTTGTACACTTTTTGCGGACAATGGAACAACAGTTGAG

Synonyms

Publications