EWM21902.1, cds8772 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21902.1 vs. NCBI_GenBank
Match: gi|585102248|gb|EWM21902.1| (hypothetical protein Naga_100070g28 [Nannochloropsis gaditana]) HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0 Query: 1 MTPGRSQTGLLLLLFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQSRCYALDPAFVTDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTTTSKGFGSSS 343 MTPGRSQTGLLLLLFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQSRCYALDPAFVTDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTTTSKGFGSSS Sbjct: 1 MTPGRSQTGLLLLLFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQSRCYALDPAFVTDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTTTSKGFGSSS 343
BLAST of EWM21902.1 vs. NCBI_GenBank
Match: gi|971516126|dbj|GAQ82112.1| (hypothetical protein KFL_001000340 [Klebsormidium nitens]) HSP 1 Score: 70.4774 bits (171), Expect = 2.077e-10 Identity = 70/231 (30.30%), Postives = 99/231 (42.86%), Query Frame = 0 Query: 83 ALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTT--VELRYGNSL-RNLFYYEPGPGKMDQLLIPSGDPKN--LQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKR 308 A L G + FG+ +R YF +Q A + G V+L ++ RNLFY P Q+ + G K LQ ++ +A V P + LP SVD VV Y L+ ++ +A +LK F+FVE V N ++ G++ L A+HRATG P D V A +E E D+ VE + DPH+VGV KR Sbjct: 11 AALAGALSIAGFGV----LRAAVYFRMQYITAAMVARHVPRGGARLVDLSPKDAAGRNLFYL---PKDAVQVTVFDGADKGAYLQ---------ELGIRAGVPVDVRPVPAARMNLPPASVDAVVCVYGLSTTRDAAAVLREAARVLKPGKPFIFVENVASANGVVRGLQAGLAAVHRATGWGAAPDKDSLRDVQAISE-------FE-DIQVERIWDWQDPHVVGVAVKR 217
BLAST of EWM21902.1 vs. NCBI_GenBank
Match: gi|168055931|ref|XP_001779976.1| (predicted protein [Physcomitrella patens] >gi|162668581|gb|EDQ55185.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 61.2326 bits (147), Expect = 5.572e-7 Identity = 71/264 (26.89%), Postives = 119/264 (45.08%), Query Frame = 0 Query: 83 ALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNG--TTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTY-MLNKSKQPLVTFAK-AMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDR-----GPDYEPSKSEKRKLARRRGMTTTSK 337 +L+ G G+F R YF +Q IA + L G V+ G RNL+YY P Q++ + +PK A+ AA A + LP+ +LPA S+D VVS M + S + + T + A+ +LK F+++E V +NPL+ ++ + + + G DL + + K +G E+ + + F DPHIVG+ K++ G D P K++K K+ ++ G++ K Sbjct: 63 SLVTGALSFGVF-------RTVVYFRMQLIIAHMLALHVPKGGARVVDFSVGEG-RNLYYY---PKDTVQVVGVNPNPKVPMLEAQ-------AAYAKVPIRILPDVS---RLPANSMDAVVSVQGMEDMSDEQVETVLRDAVRVLKPGKKFIYIENVGAENPLVLAAQQSIEGLGKLFGKKYTVTRDLLSFIL-------KTKGFEV-IKYQVVLGFQDPHIVGIATKKQQTTTGAGIGKDTIPKKNKKEKVPQQTGLSDPQK 297 The following BLAST results are available for this feature:
BLAST of EWM21902.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|