rna880, rna880 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna880
Unique Name	rna880
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1005
Alignment location	CM002456.1:631474..633132 +

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Properties


Property Name	Value
Product	Major facilitator superfamily domain, general substrate transporter
Orig transcript id	gnl\|cribi\|Naga_100017g73.347.mrna
Orig protein id	gnl\|cribi\|Naga_100017g73.347
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:631474..633132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g73	gene843	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna880	rna880-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29849.1	cds880	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:631474..633132+
coding sequence from alignment at CM002456.1:631474..633132+

mRNA sequence

>rna880 ID=rna880|Name=rna880|organism=Nannochloropsis gaditana|type=mRNA|length=1005bp
ATGCACTTTATATCACTCTGTTCCTACAGGCAAGTCGCCGCAGGCGGTCG
CATGGGGTATTCGTCCTTGTCGTTTTTTCCAGTTGCTTACGTTGAACGTC
ATCGACGACCCGCACCTTTTCGCGTGCTCTATACTGCGTGCCTTATTGTC
CTGAAGGCCTACCATACGAGTGCGTTGAACAATTTTTCCGCCTCAAACCC
TCCGTTTTCTTCTGGTTTCGCGTGCCTGAGTAGTAGCAGTAAAGACGTCT
CCCCCTCCTCCCCCCCGCGTCTCACACGCCGAAACTTCATGACGCACGGT
GGCAGCGGCAGTGAGCATGGCACTGCGAGCAGCAGCATGGCTAGTAGCGC
GAGTTCGAGCAGTCTGGACCAGCCAGTAGACAGGATGGCAGTGCGTCGAC
CGCTTATTATAACCGGGCCCTCGGGCGTGGGGAAGGGCACCCTGATCCGC
CGCTTGCTGGGGGAGTATCCTTTGCGCTTTGGATTCTCCTGCAGCCATAC
TACTAGAGGTCCCCGCCCGGGAGAGAAGGAGGGGGTGGACTATTTCTTCA
CGACTCGCGAGCGGCTACAGGCTGAGATTGATGAGGGCAAATTTTTGGAG
CACGCGACGGTACACAATAATCTGTATGGCACAAGTTTTGAAGCCATCCA
AAAAGTTCAGGAGGAAGGAAAAATTTGTATATTGGATATCGACGTACAAG
GAGTAATTTCTGTGAAAGGCGCGTTGGCGCGAGGCGCGCTCCATGATTTG
CGGCCCCTGTATGTGTTTATATCTCCCCCATCCTTGGCGGTGTTGGAATC
GCGATTACGGGGGCGCGAGACAGAGAAAGAAGAAGATGTACTCAGGCGTC
TAAAGAATGCCAAGAGAGAGGTGGAATATGGAGTGGCACCGGGAAACTTT
GACAAGGTGGTAGTGAACGCCGACCTGGACGATGCCTACATAGATCTAAG
GACGTACATCGAGACGATGTACTACGGCGATGAGGAGGTGCAATCCAGCA
GTTGA

protein sequence of rna880

>rna880-protein ID=rna880-protein|Name=rna880|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MSAMTVVIAAWGTSLTHAVHERASLYTIDALADLLGFLVGVAITAAGTPA
TTGLALAVIFIFQNLLLVRVLRDDPITPSTGTTATEGSSSTLVQVPFIAG
LHMSFDNKQFVALFKAAVFGSIVGTTVNLLPIFFQVVMNVPDSSLKRVYG
IYVQAVVASAFVAVLAVGRLNARWGKICVLRFGVACGSLYGLLAFFASYA
RTVEWFYLTSVPAGLFVGTVTVNGNVLLSNSIDYDQLKTGFRRQSLYQCL
MYVPLTFVSVAGSSIPLSIITAFGGLEAGHAPPAAVIQTLRLWISLIVTG
CLIVSNNYLSNFKLTEAVQEDISAQLQLREQGNLLPPRDPLQENEPHKNE
AVERAGNLPCGTCKGATDVSEKRGVDPGEVCAAVDAELDMSSSMTAAGLW
HCTNSFLDLNFSSSELALLATHKGKQWKLWTYLLNIIASAVYAIVLLVET
IAAIDQRGDLTGAEVFASFFMLASSMVIYEGGRLHAMKEIYKMGDEQKVA
RWARRRLSARKSIRHSVLVNPFRLVRREIVAHTMMSITLIFVITSLPSPI
RK

mRNA from alignment at CM002456.1:631474..633132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna880 ID=rna880|Name=rna880|organism=Nannochloropsis gaditana|type=mRNA|length=1659bp|location=Sequence derived from alignment at CM002456.1:631474..633132+ (Nannochloropsis gaditana)
ATGTCTGCGATGACCGTGGTAATTGCCGCCTGGGGCACATCCCTGACGCA
CGCAGTTCACGAGCGCGCCTCCCTGTACACAATTGACGCTCTTGCCGACC
TGCTGGGGTTCCTTGTTGGTGTGGCCATAACCGCTGCCGGGACCCCCGCC
ACCACAGGCTTAGCGCTAGCTgtcatcttcatcttccaAAATCTCCTGCT
TGTGCGCGTCCTCCGCGACGATCCCATCACTCCGAGTACGGGGACGACCG
CTACCGAGGGTAGCAGTAGCACTCTGGTTCAGGTGCCTTTCATTGCGGGC
CTCCACATGAGCTTTGATAATAAGCAATTTGTGGCGCTTTTCAAGGCGGC
TGTCTTTGGCAGCATCGTTGGAACAACCGTGAACCTTCTGCCAATTTTTT
TCCAGGTGGTGATGAATGTGCCCGACTCATCCCTTAAAAGGGTGTACGGC
ATCTACGTTCAAGCCGTTGTTGCCTCTGCTTTTGTCGCGGTCCTAGCCGT
CGGACGCTTGAACGCGCGCTGGGGGAAAATCTGCGTACTCAGGTTCGGGG
TGGCCTGTGGAAGTCTGTACGGGTTGCTGGCCTTCTTCGCGTCGTATGCC
CGGACGGTCGAATGGTTCTACCTCACCAGCGTTCCCGCGGGGTTATTTGT
CGGCACTGTAACCGTAAATGGCAATGTTTTGCTGAGCAATTCTATCGACT
ATGATCAGTTGAAGACGGGCTTCCGCCGGCAGTCGCTGTATCAATGTCTG
ATGTACGTGCCCTTGACCTTTGTGAGCGTGGCaggctcctccatcccctt
gtCCATAATCACTGCCTTCGGGGGCCTGGAGGCAGGCCATGCGCCCCCAG
CTGCCGTAATTCAGACTTTGAGGCTGTGGATTTCTTTAATTGTAACAGGG
TGTTTGATCGTCTCGAACAATTACCTTTCCAATTTCAAGCTGACGGAGGC
CGTGCAAGAGGACATTTCGGCACAGCTTCAACTCCGAGAGCAAGGAAATC
TCCTGCCGCCCCGAGATCCTTTGCAAGAGAATGAGCCGCACAAAAATGAA
GCAGTAGAAAGAGCAGGCAACTTGCCCTGTGGAACGTGCAAAGGCGCCAC
CGATGTctcggagaagaggggagtGGATCCTGGCGAAGTGTGCGCTGCTG
TGGACGCAGAGCTTGATATGTCATCTAGCATGACCGCCGCAGGGCTATGG
CATTGCACCAATTCTTTCTTAGACCTCAACTTTTCCTCTTCGGAACTAGC
TTTGCTGGCAACGCACAAAGGCAAACAGTGGAAATTGTGGACGTATCTTT
TGAACATCATTGCGTCGGCCGTGTATGCCATCGTATTGCTCGTTGAAACC
ATAGCAGCTATAGACCAGAGGGGTGACTTGACCGGTGCGGAGGTCTTCGC
ATCCTTCTTCATGCTCGCCTCGAGCATGGTGATCTACGAAGGAGGTCGTC
TGCACGCCATGAAGGAAATCTATAAGATGGGGGATGAGCAAAAAGTCGCA
CgttgggcgaggcggcgctTAAGTGCACGAAAGAGCATTCGACATTCAGT
TCTAGTCAATCCTTTTCGACTCGTAAGGCGAGAAATCGTTGCTCATACCA
TGATGAGCATTACGCTAATATTTGTGATCACTTCTTTACCCTCTCCTATT
CGAAAATAG

Coding sequence (CDS) from alignment at CM002456.1:631474..633132+

>rna880 ID=rna880|Name=rna880|organism=Nannochloropsis gaditana|type=CDS|length=1659bp|location=Sequence derived from alignment at CM002456.1:631474..633132+ (Nannochloropsis gaditana)
ATGTCTGCGATGACCGTGGTAATTGCCGCCTGGGGCACATCCCTGACGCA
CGCAGTTCACGAGCGCGCCTCCCTGTACACAATTGACGCTCTTGCCGACC
TGCTGGGGTTCCTTGTTGGTGTGGCCATAACCGCTGCCGGGACCCCCGCC
ACCACAGGCTTAGCGCTAGCTgtcatcttcatcttccaAAATCTCCTGCT
TGTGCGCGTCCTCCGCGACGATCCCATCACTCCGAGTACGGGGACGACCG
CTACCGAGGGTAGCAGTAGCACTCTGGTTCAGGTGCCTTTCATTGCGGGC
CTCCACATGAGCTTTGATAATAAGCAATTTGTGGCGCTTTTCAAGGCGGC
TGTCTTTGGCAGCATCGTTGGAACAACCGTGAACCTTCTGCCAATTTTTT
TCCAGGTGGTGATGAATGTGCCCGACTCATCCCTTAAAAGGGTGTACGGC
ATCTACGTTCAAGCCGTTGTTGCCTCTGCTTTTGTCGCGGTCCTAGCCGT
CGGACGCTTGAACGCGCGCTGGGGGAAAATCTGCGTACTCAGGTTCGGGG
TGGCCTGTGGAAGTCTGTACGGGTTGCTGGCCTTCTTCGCGTCGTATGCC
CGGACGGTCGAATGGTTCTACCTCACCAGCGTTCCCGCGGGGTTATTTGT
CGGCACTGTAACCGTAAATGGCAATGTTTTGCTGAGCAATTCTATCGACT
ATGATCAGTTGAAGACGGGCTTCCGCCGGCAGTCGCTGTATCAATGTCTG
ATGTACGTGCCCTTGACCTTTGTGAGCGTGGCaggctcctccatcccctt
gtCCATAATCACTGCCTTCGGGGGCCTGGAGGCAGGCCATGCGCCCCCAG
CTGCCGTAATTCAGACTTTGAGGCTGTGGATTTCTTTAATTGTAACAGGG
TGTTTGATCGTCTCGAACAATTACCTTTCCAATTTCAAGCTGACGGAGGC
CGTGCAAGAGGACATTTCGGCACAGCTTCAACTCCGAGAGCAAGGAAATC
TCCTGCCGCCCCGAGATCCTTTGCAAGAGAATGAGCCGCACAAAAATGAA
GCAGTAGAAAGAGCAGGCAACTTGCCCTGTGGAACGTGCAAAGGCGCCAC
CGATGTctcggagaagaggggagtGGATCCTGGCGAAGTGTGCGCTGCTG
TGGACGCAGAGCTTGATATGTCATCTAGCATGACCGCCGCAGGGCTATGG
CATTGCACCAATTCTTTCTTAGACCTCAACTTTTCCTCTTCGGAACTAGC
TTTGCTGGCAACGCACAAAGGCAAACAGTGGAAATTGTGGACGTATCTTT
TGAACATCATTGCGTCGGCCGTGTATGCCATCGTATTGCTCGTTGAAACC
ATAGCAGCTATAGACCAGAGGGGTGACTTGACCGGTGCGGAGGTCTTCGC
ATCCTTCTTCATGCTCGCCTCGAGCATGGTGATCTACGAAGGAGGTCGTC
TGCACGCCATGAAGGAAATCTATAAGATGGGGGATGAGCAAAAAGTCGCA
CgttgggcgaggcggcgctTAAGTGCACGAAAGAGCATTCGACATTCAGT
TCTAGTCAATCCTTTTCGACTCGTAAGGCGAGAAATCGTTGCTCATACCA
TGATGAGCATTACGCTAATATTTGTGATCACTTCTTTACCCTCTCCTATT
CGAAAATAG

Synonyms

Publications